RNA–Protein interactions for RNA: ENST00000311351.8

LSM1-201, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM1, Length 1,147 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-201ENST00000311351 RBM6P78332 1123 aaKnown RBP23.31■■□□□ 1.32
LSM1-201ENST00000311351 CCDC61Q9Y6R9 512 aa23.31■■□□□ 1.32
LSM1-201ENST00000311351 PPIP5K1Q6PFW1 1433 aa23.31■■□□□ 1.32
LSM1-201ENST00000311351 PAK3O75914 559 aaPredicted RBP23.3■■□□□ 1.32
LSM1-201ENST00000311351 ACEP12821 1306 aa23.3■■□□□ 1.32
LSM1-201ENST00000311351 TRPC5Q9UL62 973 aaPredicted RBP23.29■■□□□ 1.32
LSM1-201ENST00000311351 PHRF1Q9P1Y6 1649 aaKnown RBP23.29■■□□□ 1.32
LSM1-201ENST00000311351 NWD2Q9ULI1 1742 aa23.28■■□□□ 1.32
LSM1-201ENST00000311351 PLEKHG3A1L390 1219 aa23.26■■□□□ 1.31
LSM1-201ENST00000311351 CARD11Q9BXL7 1154 aa23.26■■□□□ 1.31
LSM1-201ENST00000311351 GLI3P10071 1580 aa23.25■■□□□ 1.31
LSM1-201ENST00000311351 NRAPQ86VF7 1730 aa23.25■■□□□ 1.31
LSM1-201ENST00000311351 PCGF6Q9BYE7 350 aa23.24■■□□□ 1.31
LSM1-201ENST00000311351 EVC2Q86UK5 1308 aa23.24■■□□□ 1.31
LSM1-201ENST00000311351 COL14A1Q05707 1796 aaKnown RBP23.23■■□□□ 1.31
LSM1-201ENST00000311351 UNC5CLQ8IV45 518 aa23.22■■□□□ 1.31
LSM1-201ENST00000311351 NUTM2GQ5VZR2 741 aa23.21■■□□□ 1.31
LSM1-201ENST00000311351 NRKQ7Z2Y5 1582 aa23.21■■□□□ 1.31
LSM1-201ENST00000311351 CABP1Q9NZU7 370 aa23.2■■□□□ 1.3
LSM1-201ENST00000311351 AKAP12Q02952 1782 aa23.19■■□□□ 1.3
LSM1-201ENST00000311351 SBNO2Q9Y2G9 1366 aa23.19■■□□□ 1.3
LSM1-201ENST00000311351 FAM83GA6ND36 823 aa23.19■■□□□ 1.3
LSM1-201ENST00000311351 USP6P35125 1406 aa23.18■■□□□ 1.3
LSM1-201ENST00000311351 GJD4Q96KN9 370 aaPredicted RBP23.18■■□□□ 1.3
LSM1-201ENST00000311351 UPF1Q92900 1129 aaKnown RBP eCLIP23.16■■□□□ 1.3
LSM1-201ENST00000311351 PIK3C2AO00443 1686 aa23.16■■□□□ 1.3
LSM1-201ENST00000311351 ATAD2Q6PL18 1390 aa23.14■■□□□ 1.3
LSM1-201ENST00000311351 KIAA0232Q92628 1395 aa23.14■■□□□ 1.3
LSM1-201ENST00000311351 ABTB2Q8N961 1025 aa23.14■■□□□ 1.29
LSM1-201ENST00000311351 BRWD3Q6RI45 1802 aa23.13■■□□□ 1.29
LSM1-201ENST00000311351 VPS72Q15906 364 aa23.13■■□□□ 1.29
LSM1-201ENST00000311351 BTG4Q9NY30 223 aa23.13■■□□□ 1.29
LSM1-201ENST00000311351 MON2Q7Z3U7 1717 aa23.13■■□□□ 1.29
LSM1-201ENST00000311351 USP19O94966 1318 aa23.12■■□□□ 1.29
LSM1-201ENST00000311351 SSH2Q76I76 1423 aa23.12■■□□□ 1.29
LSM1-201ENST00000311351 PRDM11Q9NQV5 511 aa23.12■■□□□ 1.29
LSM1-201ENST00000311351 CCDC9Q9Y3X0 531 aaKnown RBP23.12■■□□□ 1.29
LSM1-201ENST00000311351 BRD4O60885 1362 aaPredicted RBP23.12■■□□□ 1.29
LSM1-201ENST00000311351 ZC3H6P61129 1189 aaKnown RBP23.1■■□□□ 1.29
LSM1-201ENST00000311351 CHRNA2Q15822 529 aa23.1■■□□□ 1.29
LSM1-201ENST00000311351 MSH5O43196 834 aa23.09■■□□□ 1.29
LSM1-201ENST00000311351 CPSF1Q10570 1443 aaKnown RBP23.08■■□□□ 1.29
LSM1-201ENST00000311351 LMO7Q8WWI1 1683 aa23.08■■□□□ 1.29
LSM1-201ENST00000311351 SLIT3O75094 1523 aa23.08■■□□□ 1.28
LSM1-201ENST00000311351 CLSPNQ9HAW4 1339 aa23.08■■□□□ 1.28
LSM1-201ENST00000311351 EP400Q96L91 3159 aa23.07■■□□□ 1.28
LSM1-201ENST00000311351 CD163L1Q9NR16 1453 aa23.06■■□□□ 1.28
LSM1-201ENST00000311351 ST20-MTHFSA0A0A6YYL1 179 aa23.06■■□□□ 1.28
LSM1-201ENST00000311351 NLRP13Q86W25 1043 aa23.06■■□□□ 1.28
LSM1-201ENST00000311351 TESK2Q96S53 571 aa23.05■■□□□ 1.28
LSM1-201ENST00000311351 KTN1Q86UP2 1357 aaKnown RBP23.04■■□□□ 1.28
LSM1-201ENST00000311351 USP47Q96K76 1375 aa23.04■■□□□ 1.28
LSM1-201ENST00000311351 NLRP6P59044 892 aa23.04■■□□□ 1.28
LSM1-201ENST00000311351 TTC21BQ7Z4L5 1316 aa23.04■■□□□ 1.28
LSM1-201ENST00000311351 CAMTA1Q9Y6Y1 1673 aa23.03■■□□□ 1.28
LSM1-201ENST00000311351 CPDO75976 1380 aa23.03■■□□□ 1.28
LSM1-201ENST00000311351 GCP02774 474 aa23.02■■□□□ 1.28
LSM1-201ENST00000311351 SEPT12Q8IYM1 358 aa23.02■■□□□ 1.28
LSM1-201ENST00000311351 ZNF692Q9BU19 519 aaPredicted RBP23.02■■□□□ 1.28
LSM1-201ENST00000311351 THSD7AQ9UPZ6 1657 aa23.01■■□□□ 1.27
LSM1-201ENST00000311351 TMC1Q8TDI8 760 aa23.01■■□□□ 1.27
LSM1-201ENST00000311351 STRN4Q9NRL3 753 aa23.01■■□□□ 1.27
LSM1-201ENST00000311351 SPATA31A5Q5VU36 1347 aa23.01■■□□□ 1.27
LSM1-201ENST00000311351 SPATA31A7Q8IWB4 1347 aa23.01■■□□□ 1.27
LSM1-201ENST00000311351 FAM98CQ17RN3 349 aaKnown RBP23■■□□□ 1.27
LSM1-201ENST00000311351 A0A0G2JS52 829 aa22.99■■□□□ 1.27
LSM1-201ENST00000311351 MYT1Q01538 1121 aa22.99■■□□□ 1.27
LSM1-201ENST00000311351 CCER1Q8TC90 406 aaPredicted RBP22.99■■□□□ 1.27
LSM1-201ENST00000311351 TTC21AQ8NDW8 1320 aa22.99■■□□□ 1.27
LSM1-201ENST00000311351 USP54Q70EL1 1684 aa22.98■■□□□ 1.27
LSM1-201ENST00000311351 ZBTB7CA1YPR0 619 aa22.98■■□□□ 1.27
LSM1-201ENST00000311351 ONECUT3O60422 494 aaPredicted RBP22.98■■□□□ 1.27
LSM1-201ENST00000311351 SLC12A5Q9H2X9 1139 aa22.98■■□□□ 1.27
LSM1-201ENST00000311351 TIMELESSQ9UNS1 1208 aa22.98■■□□□ 1.27
LSM1-201ENST00000311351 COL18A1P39060 1754 aa22.97■■□□□ 1.27
LSM1-201ENST00000311351 A0A1W2PP64 1363 aa22.97■■□□□ 1.27
LSM1-201ENST00000311351 SUGP2Q8IX01 1082 aaKnown RBP eCLIP22.96■■□□□ 1.27
LSM1-201ENST00000311351 COL5A2P05997 1499 aaPredicted RBP22.96■■□□□ 1.27
LSM1-201ENST00000311351 NFAT5O94916 1531 aa22.96■■□□□ 1.27
LSM1-201ENST00000311351 SPATA31A1Q5TZJ5 1347 aa22.95■■□□□ 1.26
LSM1-201ENST00000311351 RGPD5Q99666 1765 aa22.94■■□□□ 1.26
LSM1-201ENST00000311351 SOX12O15370 315 aa22.94■■□□□ 1.26
LSM1-201ENST00000311351 HDGFL2Q7Z4V5 671 aaPredicted RBP22.94■■□□□ 1.26
LSM1-201ENST00000311351 PUS7Q96PZ0 661 aaKnown RBP22.94■■□□□ 1.26
LSM1-201ENST00000311351 ZRANB1Q9UGI0 708 aa22.94■■□□□ 1.26
LSM1-201ENST00000311351 EDC4Q6P2E9 1401 aaKnown RBP22.93■■□□□ 1.26
LSM1-201ENST00000311351 LARP1Q6PKG0 1096 aaKnown RBP22.93■■□□□ 1.26
LSM1-201ENST00000311351 EVA1CP58658 441 aa22.92■■□□□ 1.26
LSM1-201ENST00000311351 KRT27Q7Z3Y8 459 aa22.92■■□□□ 1.26
LSM1-201ENST00000311351 NME9Q86XW9 330 aa22.92■■□□□ 1.26
LSM1-201ENST00000311351 USP35Q9P2H5 1018 aa22.92■■□□□ 1.26
LSM1-201ENST00000311351 AATKQ6ZMQ8 1374 aa22.91■■□□□ 1.26
LSM1-201ENST00000311351 NINLQ9Y2I6 1382 aa22.91■■□□□ 1.26
LSM1-201ENST00000311351 TERF2IPQ9NYB0 399 aa22.91■■□□□ 1.26
LSM1-201ENST00000311351 USP31Q70CQ4 1352 aa22.9■■□□□ 1.26
LSM1-201ENST00000311351 LTN1O94822 1766 aa22.89■■□□□ 1.26
LSM1-201ENST00000311351 TMF1P82094 1093 aa22.89■■□□□ 1.25
LSM1-201ENST00000311351 MYOM1P52179 1685 aa22.89■■□□□ 1.25
LSM1-201ENST00000311351 KCNH5Q8NCM2 988 aa22.88■■□□□ 1.25
LSM1-201ENST00000311351 BLMP54132 1417 aaPredicted RBP22.88■■□□□ 1.25
Retrieved 100 of 20,778 RNA–protein pairs in 49.4 ms