RNA–Protein interactions for RNA: ENST00000297405.9

CSMD3-201, Transcript of CUB and Sushi multiple domains 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSMD3, Length 13,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-201ENST00000297405 HOOK3Q86VS8 718 aa5.73□□□□□ -1.49
CSMD3-201ENST00000297405 URB1O60287 2271 aaKnown RBP5.73□□□□□ -1.49
CSMD3-201ENST00000297405 TRAK2O60296 914 aa5.73□□□□□ -1.49
CSMD3-201ENST00000297405 EHBP1Q8NDI1 1231 aa5.73□□□□□ -1.49
CSMD3-201ENST00000297405 HSPA4P34932 840 aa5.73□□□□□ -1.49
CSMD3-201ENST00000297405 KLHL10Q6JEL2 608 aa5.73□□□□□ -1.49
CSMD3-201ENST00000297405 CARD11Q9BXL7 1154 aa5.73□□□□□ -1.49
CSMD3-201ENST00000297405 GSDMDP57764 484 aa5.73□□□□□ -1.49
CSMD3-201ENST00000297405 TSPY26PQ9H489 355 aa5.73□□□□□ -1.49
CSMD3-201ENST00000297405 DDX19BQ9UMR2 479 aa5.73□□□□□ -1.49
CSMD3-201ENST00000297405 KIF27Q86VH2 1401 aa5.73□□□□□ -1.49
CSMD3-201ENST00000297405 CNTLNQ9NXG0 1405 aa5.73□□□□□ -1.49
CSMD3-201ENST00000297405 TRIM29Q14134 588 aa5.73□□□□□ -1.49
CSMD3-201ENST00000297405 KANK1Q14678 1352 aa5.72□□□□□ -1.49
CSMD3-201ENST00000297405 RBBP5Q15291 538 aaKnown RBP5.72□□□□□ -1.49
CSMD3-201ENST00000297405 B4GALNT4Q76KP1 1039 aa5.72□□□□□ -1.49
CSMD3-201ENST00000297405 CUX1P39880 1505 aa5.72□□□□□ -1.49
CSMD3-201ENST00000297405 INTS3Q68E01 1043 aaKnown RBP5.72□□□□□ -1.49
CSMD3-201ENST00000297405 SPATS2Q86XZ4 545 aaKnown RBP5.72□□□□□ -1.49
CSMD3-201ENST00000297405 SCRIBQ14160 1630 aa5.72□□□□□ -1.49
CSMD3-201ENST00000297405 UACAQ9BZF9 1416 aa5.72□□□□□ -1.49
CSMD3-201ENST00000297405 GCOM1H8Y6P7 765 aaPredicted RBP5.72□□□□□ -1.49
CSMD3-201ENST00000297405 MYZAPP0CAP1 466 aa5.72□□□□□ -1.49
CSMD3-201ENST00000297405 NPHP1O15259 732 aa5.72□□□□□ -1.49
CSMD3-201ENST00000297405 SAFBQ15424 915 aaKnown RBP eCLIP5.72□□□□□ -1.49
CSMD3-201ENST00000297405 STIM1Q13586 685 aa5.72□□□□□ -1.49
CSMD3-201ENST00000297405 ANKRD1Q15327 319 aa5.72□□□□□ -1.49
CSMD3-201ENST00000297405 XBP1P17861 261 aa5.72□□□□□ -1.49
CSMD3-201ENST00000297405 TAOK3Q9H2K8 898 aa5.72□□□□□ -1.49
CSMD3-201ENST00000297405 STMN4Q9H169 189 aaPredicted RBP5.72□□□□□ -1.49
CSMD3-201ENST00000297405 WRNQ14191 1432 aaPredicted RBP eCLIP5.72□□□□□ -1.49
CSMD3-201ENST00000297405 NOL10Q9BSC4 688 aaKnown RBP5.72□□□□□ -1.49
CSMD3-201ENST00000297405 NAA15Q9BXJ9 866 aaKnown RBP5.72□□□□□ -1.49
CSMD3-201ENST00000297405 TRIM5Q9C035 493 aa5.72□□□□□ -1.49
CSMD3-201ENST00000297405 PSMA5P28066 241 aa5.71□□□□□ -1.49
CSMD3-201ENST00000297405 CLCN1P35523 988 aa5.71□□□□□ -1.49
CSMD3-201ENST00000297405 SMC4Q9NTJ3 1288 aa5.71□□□□□ -1.49
CSMD3-201ENST00000297405 HIP1O00291 1037 aa5.71□□□□□ -1.49
CSMD3-201ENST00000297405 SMARCC1Q92922 1105 aaPredicted RBP5.71□□□□□ -1.5
CSMD3-201ENST00000297405 CFAP45Q9UL16 551 aa5.71□□□□□ -1.5
CSMD3-201ENST00000297405 POLA1P09884 1462 aaPredicted RBP5.71□□□□□ -1.5
CSMD3-201ENST00000297405 GABPB1Q06547 395 aaPredicted RBP5.71□□□□□ -1.5
CSMD3-201ENST00000297405 GRPEL1Q9HAV7 217 aa5.71□□□□□ -1.5
CSMD3-201ENST00000297405 CCDC18Q5T9S5 1454 aa5.71□□□□□ -1.5
CSMD3-201ENST00000297405 PPP1R12BO60237 982 aaPredicted RBP5.71□□□□□ -1.5
CSMD3-201ENST00000297405 EPS15P42566 896 aa5.71□□□□□ -1.5
CSMD3-201ENST00000297405 MYCBPQ99417 103 aaPredicted RBP5.71□□□□□ -1.5
CSMD3-201ENST00000297405 RASSF4Q9H2L5 321 aa5.71□□□□□ -1.5
CSMD3-201ENST00000297405 CEP83Q9Y592 693 aa5.71□□□□□ -1.5
CSMD3-201ENST00000297405 CCDC102AQ96A19 550 aa5.71□□□□□ -1.5
CSMD3-201ENST00000297405 MKRN1Q9UHC7 482 aaKnown RBP5.71□□□□□ -1.5
CSMD3-201ENST00000297405 TTC14Q96N46 770 aa5.71□□□□□ -1.5
CSMD3-201ENST00000297405 NACADO15069 1562 aa5.71□□□□□ -1.5
CSMD3-201ENST00000297405 POTEDQ86YR6 584 aa5.7□□□□□ -1.5
CSMD3-201ENST00000297405 CCDC148Q8NFR7 591 aa5.7□□□□□ -1.5
CSMD3-201ENST00000297405 CCDC144AA2RUR9 1427 aa5.7□□□□□ -1.5
CSMD3-201ENST00000297405 BUB1BO60566 1050 aaPredicted RBP5.7□□□□□ -1.5
CSMD3-201ENST00000297405 SMC2O95347 1197 aa5.7□□□□□ -1.5
CSMD3-201ENST00000297405 WASHC2AQ641Q2 1341 aa5.7□□□□□ -1.5
CSMD3-201ENST00000297405 WASHC2CQ9Y4E1 1318 aa5.7□□□□□ -1.5
CSMD3-201ENST00000297405 C11orf95C9JLR9 678 aaPredicted RBP5.7□□□□□ -1.5
CSMD3-201ENST00000297405 DESP17661 470 aa5.7□□□□□ -1.5
CSMD3-201ENST00000297405 POLR1AO95602 1720 aaPredicted RBP5.7□□□□□ -1.5
CSMD3-201ENST00000297405 EIF3DO15371 548 aaKnown RBP eCLIP5.7□□□□□ -1.5
CSMD3-201ENST00000297405 OFD1O75665 1012 aa5.7□□□□□ -1.5
CSMD3-201ENST00000297405 FMN1Q68DA7 1419 aa5.7□□□□□ -1.5
CSMD3-201ENST00000297405 SLMAPQ14BN4 828 aa5.7□□□□□ -1.5
CSMD3-201ENST00000297405 NSRP1Q9H0G5 558 aaKnown RBP5.7□□□□□ -1.5
CSMD3-201ENST00000297405 BRMS1Q9HCU9 246 aa5.7□□□□□ -1.5
CSMD3-201ENST00000297405 SYNE3Q6ZMZ3 975 aa5.7□□□□□ -1.5
CSMD3-201ENST00000297405 CCDC114Q96M63 670 aa5.7□□□□□ -1.5
CSMD3-201ENST00000297405 ABCC9O60706 1549 aa5.7□□□□□ -1.5
CSMD3-201ENST00000297405 CACNA1CQ13936 2221 aa5.7□□□□□ -1.5
CSMD3-201ENST00000297405 WDR33Q9C0J8 1336 aaKnown RBP5.7□□□□□ -1.5
CSMD3-201ENST00000297405 PPFIA2O75334 1257 aa5.7□□□□□ -1.5
CSMD3-201ENST00000297405 TTC31Q49AM3 519 aaPredicted RBP5.7□□□□□ -1.5
CSMD3-201ENST00000297405 GBP6Q6ZN66 633 aa5.7□□□□□ -1.5
CSMD3-201ENST00000297405 ARFGAP3Q9NP61 516 aa5.7□□□□□ -1.5
CSMD3-201ENST00000297405 MIA2Q96PC5 1412 aa5.7□□□□□ -1.5
CSMD3-201ENST00000297405 ERC1Q8IUD2 1116 aa5.7□□□□□ -1.5
CSMD3-201ENST00000297405 LUC7L2Q9Y383 392 aaKnown RBP5.7□□□□□ -1.5
CSMD3-201ENST00000297405 SMTNL1A8MU46 457 aa5.69□□□□□ -1.5
CSMD3-201ENST00000297405 STAC3Q96MF2 364 aa5.69□□□□□ -1.5
CSMD3-201ENST00000297405 ZNF396Q96N95 335 aaPredicted RBP5.69□□□□□ -1.5
CSMD3-201ENST00000297405 MYBBP1AQ9BQG0 1328 aaKnown RBP5.69□□□□□ -1.5
CSMD3-201ENST00000297405 CTAGE5O15320 804 aa5.69□□□□□ -1.5
CSMD3-201ENST00000297405 RTF1Q92541 710 aaKnown RBP5.69□□□□□ -1.5
CSMD3-201ENST00000297405 ITPRIPQ8IWB1 547 aa5.69□□□□□ -1.5
CSMD3-201ENST00000297405 CEP112Q8N8E3 955 aa5.69□□□□□ -1.5
CSMD3-201ENST00000297405 CDK5RAP3Q96JB5 506 aa5.69□□□□□ -1.5
CSMD3-201ENST00000297405 CEP63Q96MT8 703 aa5.69□□□□□ -1.5
CSMD3-201ENST00000297405 TACC1O75410 805 aa5.69□□□□□ -1.5
CSMD3-201ENST00000297405 KIF5BP33176 963 aa5.69□□□□□ -1.5
CSMD3-201ENST00000297405 HDGFP51858 240 aaKnown RBP5.69□□□□□ -1.5
CSMD3-201ENST00000297405 CCDC158Q5M9N0 1113 aa5.69□□□□□ -1.5
CSMD3-201ENST00000297405 CCDC94Q9BW85 323 aaPredicted RBP5.69□□□□□ -1.5
CSMD3-201ENST00000297405 KIF1CO43896 1103 aaKnown RBP5.69□□□□□ -1.5
CSMD3-201ENST00000297405 RBM25P49756 843 aaKnown RBP5.69□□□□□ -1.5
CSMD3-201ENST00000297405 HSP90AB4PQ58FF6 505 aa5.69□□□□□ -1.5
CSMD3-201ENST00000297405 KLHL34Q8N239 644 aa5.69□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms