RNA–Protein interactions for RNA: ENST00000264039.6

GPC1-201, Transcript of glypican 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene GPC1, Length 3,713 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPC1-201ENST00000264039 ADCY5O95622 1261 aa19.77■□□□□ 0.75
GPC1-201ENST00000264039 KCNJ4P48050 445 aa19.76■□□□□ 0.75
GPC1-201ENST00000264039 SUGP2Q8IX01 1082 aaKnown RBP eCLIP19.76■□□□□ 0.75
GPC1-201ENST00000264039 BMP2KLQ5H9B9 411 aa19.76■□□□□ 0.75
GPC1-201ENST00000264039 RBM25P49756 843 aaKnown RBP19.75■□□□□ 0.75
GPC1-201ENST00000264039 NUCB1Q02818 461 aa19.75■□□□□ 0.75
GPC1-201ENST00000264039 LMBRD1Q9NUN5 540 aa19.75■□□□□ 0.75
GPC1-201ENST00000264039 FBXW7Q969H0 707 aa19.75■□□□□ 0.75
GPC1-201ENST00000264039 AEBP1Q8IUX7 1158 aa19.74■□□□□ 0.75
GPC1-201ENST00000264039 C16orf45Q96MC5 204 aaPredicted RBP19.74■□□□□ 0.75
GPC1-201ENST00000264039 CAMSAP2Q08AD1 1489 aa19.74■□□□□ 0.75
GPC1-201ENST00000264039 TRMT2AQ8IZ69 625 aaKnown RBP19.74■□□□□ 0.75
GPC1-201ENST00000264039 CARD14Q9BXL6 1004 aa19.74■□□□□ 0.75
GPC1-201ENST00000264039 VPS37CA5D8V6 355 aaPredicted RBP19.73■□□□□ 0.75
GPC1-201ENST00000264039 HDAC1Q13547 482 aaPredicted RBP19.73■□□□□ 0.75
GPC1-201ENST00000264039 GPRASP1Q5JY77 1395 aa19.73■□□□□ 0.75
GPC1-201ENST00000264039 KIF3BO15066 747 aa19.73■□□□□ 0.75
GPC1-201ENST00000264039 TSHZ3Q63HK5 1081 aa19.73■□□□□ 0.75
GPC1-201ENST00000264039 KIAA0586Q9BVV6 1533 aa19.72■□□□□ 0.75
GPC1-201ENST00000264039 TCOF1Q13428 1488 aaKnown RBP19.72■□□□□ 0.75
GPC1-201ENST00000264039 ZNF692Q9BU19 519 aaPredicted RBP19.72■□□□□ 0.75
GPC1-201ENST00000264039 CWC22Q9HCG8 908 aaKnown RBP19.72■□□□□ 0.75
GPC1-201ENST00000264039 ZNF500O60304 480 aaPredicted RBP19.72■□□□□ 0.75
GPC1-201ENST00000264039 GCC1Q96CN9 775 aa19.72■□□□□ 0.75
GPC1-201ENST00000264039 NSFL1CQ9UNZ2 370 aaKnown RBP19.72■□□□□ 0.75
GPC1-201ENST00000264039 KDM5CP41229 1560 aa19.71■□□□□ 0.75
GPC1-201ENST00000264039 CABP2Q9NPB3 220 aa19.71■□□□□ 0.75
GPC1-201ENST00000264039 NOL12Q9UGY1 213 aaKnown RBP eCLIP19.71■□□□□ 0.75
GPC1-201ENST00000264039 V9GYY5 206 aaPredicted RBP19.71■□□□□ 0.75
GPC1-201ENST00000264039 TMPOP42166 694 aaKnown RBP19.71■□□□□ 0.75
GPC1-201ENST00000264039 PRAG1Q86YV5 1406 aa19.71■□□□□ 0.75
GPC1-201ENST00000264039 ZNF445P59923 1031 aa19.71■□□□□ 0.75
GPC1-201ENST00000264039 GPT2Q8TD30 523 aa19.71■□□□□ 0.75
GPC1-201ENST00000264039 ZBTB22O15209 634 aa19.7■□□□□ 0.74
GPC1-201ENST00000264039 MCM5P33992 734 aa19.7■□□□□ 0.74
GPC1-201ENST00000264039 HS1BP3Q53T59 392 aa19.7■□□□□ 0.74
GPC1-201ENST00000264039 JPH4Q96JJ6 628 aa19.7■□□□□ 0.74
GPC1-201ENST00000264039 TPD52L1Q16890 204 aaPredicted RBP19.69■□□□□ 0.74
GPC1-201ENST00000264039 LAMC3Q9Y6N6 1575 aa19.69■□□□□ 0.74
GPC1-201ENST00000264039 DMTNQ08495 405 aa19.68■□□□□ 0.74
GPC1-201ENST00000264039 CFAP44Q96MT7 982 aa19.68■□□□□ 0.74
GPC1-201ENST00000264039 TRIM5Q9C035 493 aa19.68■□□□□ 0.74
GPC1-201ENST00000264039 MYRIPQ8NFW9 859 aa19.68■□□□□ 0.74
GPC1-201ENST00000264039 NAP1L2Q9ULW6 460 aaPredicted RBP19.68■□□□□ 0.74
GPC1-201ENST00000264039 TERF1P54274 439 aa19.68■□□□□ 0.74
GPC1-201ENST00000264039 TOPBP1Q92547 1522 aa19.67■□□□□ 0.74
GPC1-201ENST00000264039 CAMK4Q16566 473 aa19.67■□□□□ 0.74
GPC1-201ENST00000264039 GIMAP6Q6P9H5 292 aa19.67■□□□□ 0.74
GPC1-201ENST00000264039 BCL2L12Q9HB09 334 aa19.67■□□□□ 0.74
GPC1-201ENST00000264039 ZBTB40Q9NUA8 1239 aa19.67■□□□□ 0.74
GPC1-201ENST00000264039 ZBTB9Q96C00 473 aa19.66■□□□□ 0.74
GPC1-201ENST00000264039 NECTIN2Q92692 538 aa19.66■□□□□ 0.74
GPC1-201ENST00000264039 FBLN1P23142 703 aa19.66■□□□□ 0.74
GPC1-201ENST00000264039 OTUD7AQ8TE49 926 aaPredicted RBP19.66■□□□□ 0.74
GPC1-201ENST00000264039 PRIMPOLQ96LW4 560 aa19.66■□□□□ 0.74
GPC1-201ENST00000264039 DIAPH1O60610 1272 aaKnown RBP19.65■□□□□ 0.74
GPC1-201ENST00000264039 ATP2B3Q16720 1220 aa19.65■□□□□ 0.74
GPC1-201ENST00000264039 PRKAR2BP31323 418 aa19.65■□□□□ 0.74
GPC1-201ENST00000264039 UHRF1BP1Q6BDS2 1440 aa19.65■□□□□ 0.74
GPC1-201ENST00000264039 DDX54Q8TDD1 881 aaKnown RBP19.65■□□□□ 0.74
GPC1-201ENST00000264039 RTF1Q92541 710 aaKnown RBP19.65■□□□□ 0.74
GPC1-201ENST00000264039 NSD3Q9BZ95 1437 aa19.65■□□□□ 0.74
GPC1-201ENST00000264039 LETM1O95202 739 aaPredicted RBP19.64■□□□□ 0.74
GPC1-201ENST00000264039 CCDC112Q8NEF3 446 aa19.64■□□□□ 0.74
GPC1-201ENST00000264039 RIOK3O14730 519 aaKnown RBP19.64■□□□□ 0.73
GPC1-201ENST00000264039 ZRSR1Q15695 479 aaKnown RBP19.64■□□□□ 0.73
GPC1-201ENST00000264039 GTPBP4Q9BZE4 634 aaKnown RBP19.64■□□□□ 0.73
GPC1-201ENST00000264039 TROQ12816 1431 aaPredicted RBP19.64■□□□□ 0.73
GPC1-201ENST00000264039 GGT6Q6P531 493 aa19.64■□□□□ 0.73
GPC1-201ENST00000264039 ABCA10Q8WWZ4 1543 aa19.63■□□□□ 0.73
GPC1-201ENST00000264039 ERCC6Q03468 1493 aa19.63■□□□□ 0.73
GPC1-201ENST00000264039 MAP4K4O95819 1239 aaPredicted RBP19.63■□□□□ 0.73
GPC1-201ENST00000264039 OS9Q13438 667 aaPredicted RBP19.63■□□□□ 0.73
GPC1-201ENST00000264039 TMX3Q96JJ7 454 aa19.63■□□□□ 0.73
GPC1-201ENST00000264039 STAG3Q9UJ98 1225 aa19.63■□□□□ 0.73
GPC1-201ENST00000264039 COL17A1Q9UMD9 1497 aaPredicted RBP19.63■□□□□ 0.73
GPC1-201ENST00000264039 ABCF1Q8NE71 845 aaKnown RBP eCLIP19.63■□□□□ 0.73
GPC1-201ENST00000264039 ATAD2Q6PL18 1390 aa19.63■□□□□ 0.73
GPC1-201ENST00000264039 ERC2O15083 957 aa19.63■□□□□ 0.73
GPC1-201ENST00000264039 GADD45BO75293 160 aaPredicted RBP19.63■□□□□ 0.73
GPC1-201ENST00000264039 GORABQ5T7V8 394 aa19.63■□□□□ 0.73
GPC1-201ENST00000264039 KIF14Q15058 1648 aa19.63■□□□□ 0.73
GPC1-201ENST00000264039 MAGI2Q86UL8 1455 aa19.63■□□□□ 0.73
GPC1-201ENST00000264039 SMC3Q9UQE7 1217 aa19.62■□□□□ 0.73
GPC1-201ENST00000264039 FERMT3Q86UX7 667 aa19.61■□□□□ 0.73
GPC1-201ENST00000264039 CCDC66A2RUB6 948 aa19.61■□□□□ 0.73
GPC1-201ENST00000264039 USP48Q86UV5 1035 aa19.61■□□□□ 0.73
GPC1-201ENST00000264039 TWISTNBQ3B726 338 aaPredicted RBP19.6■□□□□ 0.73
GPC1-201ENST00000264039 SDSP20132 328 aa19.6■□□□□ 0.73
GPC1-201ENST00000264039 ZFP91Q96JP5 570 aaPredicted RBP19.6■□□□□ 0.73
GPC1-201ENST00000264039 HMMRO75330 724 aa19.6■□□□□ 0.73
GPC1-201ENST00000264039 KIF20AO95235 890 aa19.59■□□□□ 0.73
GPC1-201ENST00000264039 EXOC6BQ9Y2D4 811 aa19.59■□□□□ 0.73
GPC1-201ENST00000264039 ABCA5Q8WWZ7 1642 aa19.59■□□□□ 0.73
GPC1-201ENST00000264039 MINK1Q8N4C8 1332 aaPredicted RBP19.59■□□□□ 0.73
GPC1-201ENST00000264039 ZSCAN20P17040 1043 aaPredicted RBP19.59■□□□□ 0.73
GPC1-201ENST00000264039 CKAP2LQ8IYA6 745 aa19.59■□□□□ 0.73
GPC1-201ENST00000264039 TNNT1P13805 278 aa19.59■□□□□ 0.73
GPC1-201ENST00000264039 FOSBP53539 338 aa19.59■□□□□ 0.73
GPC1-201ENST00000264039 DCTN1Q14203 1278 aa19.59■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 60.5 ms