RNA–Protein interactions for RNA: ENST00000241393.3

CXCR4-201, Transcript of C-X-C motif chemokine receptor 4, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CXCR4, Length 1,682 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CXCR4-201ENST00000241393 FGD5Q6ZNL6 1462 aa11.61□□□□□ -0.55
CXCR4-201ENST00000241393 POTEMA6NI47 508 aa11.61□□□□□ -0.55
CXCR4-201ENST00000241393 CTDSPL2Q05D32 466 aa11.61□□□□□ -0.55
CXCR4-201ENST00000241393 BRICD5Q6PL45 260 aa11.61□□□□□ -0.55
CXCR4-201ENST00000241393 ARXQ96QS3 562 aa11.61□□□□□ -0.55
CXCR4-201ENST00000241393 ARHGAP35Q9NRY4 1499 aa11.61□□□□□ -0.55
CXCR4-201ENST00000241393 CLSPNQ9HAW4 1339 aa11.6□□□□□ -0.55
CXCR4-201ENST00000241393 MAP3K1Q13233 1512 aa11.6□□□□□ -0.55
CXCR4-201ENST00000241393 FANCD2Q9BXW9 1451 aa11.59□□□□□ -0.55
CXCR4-201ENST00000241393 BLOC1S3Q6QNY0 202 aa11.59□□□□□ -0.55
CXCR4-201ENST00000241393 SYMPKQ92797 1274 aaKnown RBP11.59□□□□□ -0.55
CXCR4-201ENST00000241393 GDPD2Q9HCC8 539 aa11.59□□□□□ -0.55
CXCR4-201ENST00000241393 ZNF330Q9Y3S2 320 aaPredicted RBP11.59□□□□□ -0.55
CXCR4-201ENST00000241393 RRBP1Q9P2E9 1410 aaKnown RBP11.59□□□□□ -0.55
CXCR4-201ENST00000241393 DNMBPQ6XZF7 1577 aa11.58□□□□□ -0.56
CXCR4-201ENST00000241393 ABL2P42684 1182 aa11.58□□□□□ -0.56
CXCR4-201ENST00000241393 POM121Q96HA1 1249 aa11.58□□□□□ -0.56
CXCR4-201ENST00000241393 CARMIL1Q5VZK9 1371 aa11.58□□□□□ -0.56
CXCR4-201ENST00000241393 WASHC4Q2M389 1173 aa11.57□□□□□ -0.56
CXCR4-201ENST00000241393 PCDH10Q9P2E7 1040 aa11.57□□□□□ -0.56
CXCR4-201ENST00000241393 MSS51Q4VC12 460 aa11.55□□□□□ -0.56
CXCR4-201ENST00000241393 LYPD8Q6UX82 237 aa11.55□□□□□ -0.56
CXCR4-201ENST00000241393 RNF19BQ6ZMZ0 732 aa11.55□□□□□ -0.56
CXCR4-201ENST00000241393 SPSB2Q99619 263 aa11.55□□□□□ -0.56
CXCR4-201ENST00000241393 MYT1LQ9UL68 1186 aa11.55□□□□□ -0.56
CXCR4-201ENST00000241393 ABCA10Q8WWZ4 1543 aa11.55□□□□□ -0.56
CXCR4-201ENST00000241393 JUNDP17535 347 aa11.55□□□□□ -0.56
CXCR4-201ENST00000241393 DIEXFQ68CQ4 756 aaKnown RBP11.55□□□□□ -0.56
CXCR4-201ENST00000241393 FNBP4Q8N3X1 1017 aaPredicted RBP11.55□□□□□ -0.56
CXCR4-201ENST00000241393 PTPN5P54829 565 aa11.54□□□□□ -0.56
CXCR4-201ENST00000241393 COPS2P61201 443 aa11.54□□□□□ -0.56
CXCR4-201ENST00000241393 LRRN4Q8WUT4 740 aa11.54□□□□□ -0.56
CXCR4-201ENST00000241393 THAP11Q96EK4 314 aa11.54□□□□□ -0.56
CXCR4-201ENST00000241393 TBC1D2BQ9UPU7 963 aa11.54□□□□□ -0.56
CXCR4-201ENST00000241393 RANGAP1P46060 587 aaPredicted RBP11.53□□□□□ -0.56
CXCR4-201ENST00000241393 PTPRNQ16849 979 aa11.53□□□□□ -0.56
CXCR4-201ENST00000241393 IL21Q9HBE4 155 aa11.53□□□□□ -0.56
CXCR4-201ENST00000241393 GJD4Q96KN9 370 aaPredicted RBP11.52□□□□□ -0.56
CXCR4-201ENST00000241393 LAMC3Q9Y6N6 1575 aa11.52□□□□□ -0.56
CXCR4-201ENST00000241393 TOPBP1Q92547 1522 aa11.52□□□□□ -0.57
CXCR4-201ENST00000241393 CCDC97Q96F63 343 aaPredicted RBP11.52□□□□□ -0.57
CXCR4-201ENST00000241393 FHAD1B1AJZ9 1412 aa11.51□□□□□ -0.57
CXCR4-201ENST00000241393 ZPR1O75312 459 aa11.51□□□□□ -0.57
CXCR4-201ENST00000241393 ADH1BP00325 375 aa11.51□□□□□ -0.57
CXCR4-201ENST00000241393 KANK4Q5T7N3 995 aaPredicted RBP11.51□□□□□ -0.57
CXCR4-201ENST00000241393 HOMEZQ8IX15 550 aa11.51□□□□□ -0.57
CXCR4-201ENST00000241393 ARMC2Q8NEN0 867 aa11.5□□□□□ -0.57
CXCR4-201ENST00000241393 HMX1Q9NP08 348 aaPredicted RBP11.5□□□□□ -0.57
CXCR4-201ENST00000241393 SERPINA10Q9UK55 444 aa11.5□□□□□ -0.57
CXCR4-201ENST00000241393 ZNF777Q9ULD5 760 aaPredicted RBP11.5□□□□□ -0.57
CXCR4-201ENST00000241393 CUL7Q14999 1698 aa11.5□□□□□ -0.57
CXCR4-201ENST00000241393 TIAM1Q13009 1591 aa11.5□□□□□ -0.57
CXCR4-201ENST00000241393 POLA1P09884 1462 aaPredicted RBP11.49□□□□□ -0.57
CXCR4-201ENST00000241393 MTRQ99707 1265 aa11.49□□□□□ -0.57
CXCR4-201ENST00000241393 TRIM34Q9BYJ4 488 aa11.49□□□□□ -0.57
CXCR4-201ENST00000241393 CCNB3Q8WWL7 1395 aa11.49□□□□□ -0.57
CXCR4-201ENST00000241393 EFCAB5A4FU69 1503 aa11.49□□□□□ -0.57
CXCR4-201ENST00000241393 ZC3H4Q9UPT8 1303 aaKnown RBP11.49□□□□□ -0.57
CXCR4-201ENST00000241393 ARID3CA6NKF2 412 aa11.48□□□□□ -0.57
CXCR4-201ENST00000241393 HCSTQ9UBK5 93 aa11.48□□□□□ -0.57
CXCR4-201ENST00000241393 PER1O15534 1290 aaPredicted RBP11.47□□□□□ -0.57
CXCR4-201ENST00000241393 DXOO77932 396 aaKnown RBP11.47□□□□□ -0.57
CXCR4-201ENST00000241393 CCNYL3P0C7X3 344 aa11.47□□□□□ -0.57
CXCR4-201ENST00000241393 ZNF592Q92610 1267 aa11.47□□□□□ -0.57
CXCR4-201ENST00000241393 DHX57Q6P158 1386 aaKnown RBP11.47□□□□□ -0.57
CXCR4-201ENST00000241393 SOX11P35716 441 aa11.46□□□□□ -0.57
CXCR4-201ENST00000241393 MMP16P51512 607 aa11.46□□□□□ -0.57
CXCR4-201ENST00000241393 NR6A1Q15406 480 aa11.46□□□□□ -0.57
CXCR4-201ENST00000241393 CTHP32929 405 aa11.46□□□□□ -0.58
CXCR4-201ENST00000241393 AQRO60306 1485 aaKnown RBP eCLIP11.46□□□□□ -0.58
CXCR4-201ENST00000241393 CFAP43Q8NDM7 1665 aa11.44□□□□□ -0.58
CXCR4-201ENST00000241393 WDR97A6NE52 1622 aa11.44□□□□□ -0.58
CXCR4-201ENST00000241393 LRRC9Q6ZRR7 1453 aa11.44□□□□□ -0.58
CXCR4-201ENST00000241393 GPKOWQ92917 476 aaPredicted RBP eCLIP11.44□□□□□ -0.58
CXCR4-201ENST00000241393 CALR3Q96L12 384 aaKnown RBP11.44□□□□□ -0.58
CXCR4-201ENST00000241393 ARID3AQ99856 593 aa11.44□□□□□ -0.58
CXCR4-201ENST00000241393 NUDT12Q9BQG2 462 aa11.44□□□□□ -0.58
CXCR4-201ENST00000241393 SLC6A16Q9GZN6 736 aa11.44□□□□□ -0.58
CXCR4-201ENST00000241393 RAD54L2Q9Y4B4 1467 aa11.44□□□□□ -0.58
CXCR4-201ENST00000241393 CENPBP07199 599 aaPredicted RBP11.43□□□□□ -0.58
CXCR4-201ENST00000241393 TJAP1Q5JTD0 557 aa11.43□□□□□ -0.58
CXCR4-201ENST00000241393 FAM160A2Q8N612 972 aaPredicted RBP11.43□□□□□ -0.58
CXCR4-201ENST00000241393 FKBPLQ9UIM3 349 aa11.43□□□□□ -0.58
CXCR4-201ENST00000241393 NESP48681 1621 aa11.43□□□□□ -0.58
CXCR4-201ENST00000241393 FYCO1Q9BQS8 1478 aa11.42□□□□□ -0.58
CXCR4-201ENST00000241393 PDS5BQ9NTI5 1447 aa11.42□□□□□ -0.58
CXCR4-201ENST00000241393 ACIN1Q9UKV3 1341 aaKnown RBP11.42□□□□□ -0.58
CXCR4-201ENST00000241393 EIF4G2P78344 907 aaKnown RBP eCLIP11.42□□□□□ -0.58
CXCR4-201ENST00000241393 NBPF14Q5TI25 921 aa11.42□□□□□ -0.58
CXCR4-201ENST00000241393 CCDC82Q8N4S0 544 aa11.42□□□□□ -0.58
CXCR4-201ENST00000241393 PLSCR2Q9NRY7 297 aa11.42□□□□□ -0.58
CXCR4-201ENST00000241393 EVA1BQ9NVM1 165 aa11.42□□□□□ -0.58
CXCR4-201ENST00000241393 URB2Q14146 1524 aaKnown RBP11.41□□□□□ -0.58
CXCR4-201ENST00000241393 F12P00748 615 aaPredicted RBP11.41□□□□□ -0.58
CXCR4-201ENST00000241393 C1orf115Q9H7X2 142 aa11.41□□□□□ -0.58
CXCR4-201ENST00000241393 CTTNBP2Q8WZ74 1663 aa11.41□□□□□ -0.58
CXCR4-201ENST00000241393 KCNH2Q12809 1159 aa11.4□□□□□ -0.58
CXCR4-201ENST00000241393 IRF5Q13568 498 aa11.4□□□□□ -0.58
CXCR4-201ENST00000241393 RNF166Q96A37 237 aaPredicted RBP11.4□□□□□ -0.58
CXCR4-201ENST00000241393 ABCA5Q8WWZ7 1642 aa11.4□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms