RNA–Protein interactions for RNA: ENST00000011700.10

VPS13D-201, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 10,969 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-201ENST00000011700 NEMFO60524 1076 aa7.21□□□□□ -1.25
VPS13D-201ENST00000011700 CCDC83Q8IWF9 413 aa7.21□□□□□ -1.26
VPS13D-201ENST00000011700 POTEJP0CG39 1038 aa7.21□□□□□ -1.26
VPS13D-201ENST00000011700 GTPBP4Q9BZE4 634 aaKnown RBP7.21□□□□□ -1.26
VPS13D-201ENST00000011700 G3BP1Q13283 466 aaKnown RBP eCLIP7.21□□□□□ -1.26
VPS13D-201ENST00000011700 FGFR1OPO95684 399 aaKnown RBP7.21□□□□□ -1.26
VPS13D-201ENST00000011700 CSB-PGBD3P0DP91 1061 aa7.21□□□□□ -1.26
VPS13D-201ENST00000011700 VPS36Q86VN1 386 aa7.21□□□□□ -1.26
VPS13D-201ENST00000011700 WASF1Q92558 559 aa7.21□□□□□ -1.26
VPS13D-201ENST00000011700 DDX24Q9GZR7 859 aaKnown RBP eCLIP7.21□□□□□ -1.264e-7■■■■■ 28.8
VPS13D-201ENST00000011700 ZSCAN25Q6NSZ9 544 aa7.21□□□□□ -1.26
VPS13D-201ENST00000011700 KRT32Q14532 448 aa7.21□□□□□ -1.26
VPS13D-201ENST00000011700 GNAI3P08754 354 aa7.2□□□□□ -1.26
VPS13D-201ENST00000011700 ZNF397Q8NF99 534 aaPredicted RBP7.2□□□□□ -1.26
VPS13D-201ENST00000011700 MYH9P35579 1960 aaKnown RBP7.2□□□□□ -1.26
VPS13D-201ENST00000011700 ANKRD18BA2A2Z9 1011 aa7.2□□□□□ -1.26
VPS13D-201ENST00000011700 A6NNZ2 444 aa7.2□□□□□ -1.26
VPS13D-201ENST00000011700 TUBB8Q3ZCM7 444 aa7.2□□□□□ -1.26
VPS13D-201ENST00000011700 MCTP1Q6DN14 999 aa7.2□□□□□ -1.26
VPS13D-201ENST00000011700 TUBBP07437 444 aa7.2□□□□□ -1.26
VPS13D-201ENST00000011700 HSPA5P11021 654 aaKnown RBP7.2□□□□□ -1.26
VPS13D-201ENST00000011700 GIGYF2Q6Y7W6 1299 aaKnown RBP7.2□□□□□ -1.26
VPS13D-201ENST00000011700 GNL3LQ9NVN8 582 aaKnown RBP7.2□□□□□ -1.26
VPS13D-201ENST00000011700 ATAD2Q6PL18 1390 aa7.2□□□□□ -1.26
VPS13D-201ENST00000011700 GCC1Q96CN9 775 aa7.2□□□□□ -1.26
VPS13D-201ENST00000011700 TAOK3Q9H2K8 898 aa7.2□□□□□ -1.26
VPS13D-201ENST00000011700 SDF4Q9BRK5 362 aa7.2□□□□□ -1.26
VPS13D-201ENST00000011700 UTP3Q9NQZ2 479 aaKnown RBP eCLIP7.2□□□□□ -1.261e-6■■■■■ 80.3
VPS13D-201ENST00000011700 CFAP57Q96MR6 1250 aa7.2□□□□□ -1.26
VPS13D-201ENST00000011700 TBC1D2BQ9UPU7 963 aa7.2□□□□□ -1.26
VPS13D-201ENST00000011700 SH3BGRP55822 239 aaPredicted RBP7.19□□□□□ -1.26
VPS13D-201ENST00000011700 TRIM22Q8IYM9 498 aa7.19□□□□□ -1.26
VPS13D-201ENST00000011700 PDE4AP27815 886 aa7.19□□□□□ -1.26
VPS13D-201ENST00000011700 WDR33Q9C0J8 1336 aaKnown RBP7.19□□□□□ -1.26
VPS13D-201ENST00000011700 KIF20AO95235 890 aa7.19□□□□□ -1.26
VPS13D-201ENST00000011700 PDE3AQ14432 1141 aa7.19□□□□□ -1.26
VPS13D-201ENST00000011700 CREBRFQ8IUR6 639 aa7.19□□□□□ -1.26
VPS13D-201ENST00000011700 EHBP1Q8NDI1 1231 aa7.19□□□□□ -1.26
VPS13D-201ENST00000011700 NAP1L1P55209 391 aaKnown RBP7.19□□□□□ -1.26
VPS13D-201ENST00000011700 SMTNL1A8MU46 457 aa7.19□□□□□ -1.26
VPS13D-201ENST00000011700 RUNDC1Q96C34 613 aa7.19□□□□□ -1.26
VPS13D-201ENST00000011700 CEP131Q9UPN4 1083 aa7.19□□□□□ -1.26
VPS13D-201ENST00000011700 CDC45O75419 566 aa7.19□□□□□ -1.26
VPS13D-201ENST00000011700 NGDNQ8NEJ9 315 aaKnown RBP7.19□□□□□ -1.26
VPS13D-201ENST00000011700 HOMEZQ8IX15 550 aa7.18□□□□□ -1.26
VPS13D-201ENST00000011700 CNKSR2Q8WXI2 1034 aa7.18□□□□□ -1.26
VPS13D-201ENST00000011700 FERMT1Q9BQL6 677 aa7.18□□□□□ -1.26
VPS13D-201ENST00000011700 PHAXQ9H814 394 aaKnown RBP7.18□□□□□ -1.26
VPS13D-201ENST00000011700 USH1CQ9Y6N9 552 aa7.18□□□□□ -1.26
VPS13D-201ENST00000011700 ANKRD45Q5TZF3 282 aa7.18□□□□□ -1.26
VPS13D-201ENST00000011700 JAKMIP3Q5VZ66 844 aa7.18□□□□□ -1.26
VPS13D-201ENST00000011700 KIF14Q15058 1648 aa7.18□□□□□ -1.26
VPS13D-201ENST00000011700 CCDC146Q8IYE0 955 aa7.18□□□□□ -1.26
VPS13D-201ENST00000011700 SREK1Q8WXA9 508 aaKnown RBP7.18□□□□□ -1.26
VPS13D-201ENST00000011700 CDK5RAP3Q96JB5 506 aa7.18□□□□□ -1.26
VPS13D-201ENST00000011700 ZSCAN12O43309 604 aa7.18□□□□□ -1.26
VPS13D-201ENST00000011700 BBXQ8WY36 941 aaPredicted RBP7.18□□□□□ -1.26
VPS13D-201ENST00000011700 DHX57Q6P158 1386 aaKnown RBP7.18□□□□□ -1.26
VPS13D-201ENST00000011700 BMP2KQ9NSY1 1161 aaPredicted RBP7.18□□□□□ -1.26
VPS13D-201ENST00000011700 THOC2Q8NI27 1593 aaKnown RBP7.18□□□□□ -1.26
VPS13D-201ENST00000011700 FHOD3Q2V2M9 1422 aa7.18□□□□□ -1.26
VPS13D-201ENST00000011700 EIF3DO15371 548 aaKnown RBP eCLIP7.17□□□□□ -1.26
VPS13D-201ENST00000011700 TOMM22Q9NS69 142 aa7.17□□□□□ -1.26
VPS13D-201ENST00000011700 CTAGE5O15320 804 aa7.17□□□□□ -1.26
VPS13D-201ENST00000011700 PLVAPQ9BX97 442 aa7.17□□□□□ -1.26
VPS13D-201ENST00000011700 CALCOCO1Q9P1Z2 691 aa7.17□□□□□ -1.26
VPS13D-201ENST00000011700 GCOM1H8Y6P7 765 aaPredicted RBP7.17□□□□□ -1.26
VPS13D-201ENST00000011700 MYZAPP0CAP1 466 aa7.17□□□□□ -1.26
VPS13D-201ENST00000011700 NACAP1Q9BZK3 213 aa7.17□□□□□ -1.26
VPS13D-201ENST00000011700 LRRCC1Q9C099 1032 aa7.17□□□□□ -1.26
VPS13D-201ENST00000011700 KIF1BO60333 1816 aa7.17□□□□□ -1.26
VPS13D-201ENST00000011700 NFXL1Q6ZNB6 911 aa7.17□□□□□ -1.26
VPS13D-201ENST00000011700 PPFIBP1Q86W92 1011 aa7.17□□□□□ -1.26
VPS13D-201ENST00000011700 DNAAF4Q8WXU2 420 aa7.17□□□□□ -1.26
VPS13D-201ENST00000011700 PAK3O75914 559 aaPredicted RBP7.17□□□□□ -1.26
VPS13D-201ENST00000011700 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP7.17□□□□□ -1.26
VPS13D-201ENST00000011700 RAB34Q9BZG1 259 aa7.17□□□□□ -1.26
VPS13D-201ENST00000011700 TOP2BQ02880 1626 aa7.16□□□□□ -1.26
VPS13D-201ENST00000011700 BCL11BQ9C0K0 894 aaPredicted RBP7.16□□□□□ -1.26
VPS13D-201ENST00000011700 PNISRQ8TF01 805 aaKnown RBP7.16□□□□□ -1.26
VPS13D-201ENST00000011700 CTR9Q6PD62 1173 aa7.16□□□□□ -1.26
VPS13D-201ENST00000011700 CLASRPQ8N2M8 674 aaKnown RBP7.16□□□□□ -1.26
VPS13D-201ENST00000011700 CNGA1P29973 690 aa7.16□□□□□ -1.26
VPS13D-201ENST00000011700 C22orf23Q9BZE7 217 aa7.16□□□□□ -1.26
VPS13D-201ENST00000011700 CTNNA3Q9UI47 895 aa7.16□□□□□ -1.26
VPS13D-201ENST00000011700 MAP3K1Q13233 1512 aa7.16□□□□□ -1.26
VPS13D-201ENST00000011700 CCDC196A0A1B0GTZ2 297 aa7.16□□□□□ -1.26
VPS13D-201ENST00000011700 KLHL34Q8N239 644 aa7.16□□□□□ -1.26
VPS13D-201ENST00000011700 PPP4R3BQ5MIZ7 849 aa7.16□□□□□ -1.26
VPS13D-201ENST00000011700 ZNF592Q92610 1267 aa7.16□□□□□ -1.26
VPS13D-201ENST00000011700 RILPL2Q969X0 211 aa7.16□□□□□ -1.26
VPS13D-201ENST00000011700 SHTN1A0MZ66 631 aa7.16□□□□□ -1.26
VPS13D-201ENST00000011700 FYB1O15117 783 aa7.16□□□□□ -1.26
VPS13D-201ENST00000011700 KRT85P78386 507 aa7.16□□□□□ -1.26
VPS13D-201ENST00000011700 NAA15Q9BXJ9 866 aaKnown RBP7.16□□□□□ -1.26
VPS13D-201ENST00000011700 TRIM5Q9C035 493 aa7.16□□□□□ -1.26
VPS13D-201ENST00000011700 TSPY26PQ9H489 355 aa7.16□□□□□ -1.26
VPS13D-201ENST00000011700 CCDC181Q5TID7 509 aa7.16□□□□□ -1.26
VPS13D-201ENST00000011700 TTC12Q9H892 705 aaPredicted RBP7.16□□□□□ -1.26
VPS13D-201ENST00000011700 AXDND1Q5T1B0 1012 aaPredicted RBP7.16□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms