RNA–Protein interactions for RNA: ENST00000637578.1

CLN3-260, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,577 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-260ENST00000637578 TRNP1Q6NT89 227 aa19.87■□□□□ 0.77
CLN3-260ENST00000637578 KIAA1324Q6UXG2 1013 aaKnown RBP19.87■□□□□ 0.77
CLN3-260ENST00000637578 TRIM72Q6ZMU5 477 aa19.87■□□□□ 0.77
CLN3-260ENST00000637578 MMS22LQ6ZRQ5 1243 aa19.87■□□□□ 0.77
CLN3-260ENST00000637578 CCDC117Q8IWD4 279 aaPredicted RBP19.87■□□□□ 0.77
CLN3-260ENST00000637578 PIGKQ92643 395 aa19.87■□□□□ 0.77
CLN3-260ENST00000637578 SIPA1Q96FS4 1042 aa19.87■□□□□ 0.77
CLN3-260ENST00000637578 MRGPRX3Q96LB0 322 aa19.87■□□□□ 0.77
CLN3-260ENST00000637578 PRSS16Q9NQE7 514 aa19.87■□□□□ 0.77
CLN3-260ENST00000637578 WSB2Q9NYS7 404 aaPredicted RBP19.87■□□□□ 0.77
CLN3-260ENST00000637578 HS3ST4Q9Y661 456 aa19.87■□□□□ 0.77
CLN3-260ENST00000637578 H0Y626 953 aa19.86■□□□□ 0.77
CLN3-260ENST00000637578 I6L893 689 aaPredicted RBP19.86■□□□□ 0.77
CLN3-260ENST00000637578 TM4SF5O14894 197 aa19.86■□□□□ 0.77
CLN3-260ENST00000637578 PAGE1O75459 146 aa19.86■□□□□ 0.77
CLN3-260ENST00000637578 ADCY5O95622 1261 aa19.86■□□□□ 0.77
CLN3-260ENST00000637578 UNGP13051 313 aaPredicted RBP19.86■□□□□ 0.77
CLN3-260ENST00000637578 CD6P30203 668 aa19.86■□□□□ 0.77
CLN3-260ENST00000637578 FLT3P36888 993 aa19.86■□□□□ 0.77
CLN3-260ENST00000637578 TPMTP51580 245 aa19.86■□□□□ 0.77
CLN3-260ENST00000637578 PLK1P53350 603 aa19.86■□□□□ 0.77
CLN3-260ENST00000637578 ZNF33AQ06730 810 aa19.86■□□□□ 0.77
CLN3-260ENST00000637578 SLC12A1Q13621 1099 aa19.86■□□□□ 0.77
CLN3-260ENST00000637578 RABGAP1LQ5R372 815 aa19.86■□□□□ 0.77
CLN3-260ENST00000637578 SLC41A1Q8IVJ1 513 aa19.86■□□□□ 0.77
CLN3-260ENST00000637578 CCAR2Q8N163 923 aaKnown RBP19.86■□□□□ 0.77
CLN3-260ENST00000637578 PRCCQ92733 491 aaPredicted RBP19.86■□□□□ 0.77
CLN3-260ENST00000637578 IGSF8Q969P0 613 aa19.86■□□□□ 0.77
CLN3-260ENST00000637578 PCDHB18PQ96TA0 734 aa19.86■□□□□ 0.77
CLN3-260ENST00000637578 FBRSQ9HAH7 460 aa19.86■□□□□ 0.77
CLN3-260ENST00000637578 ANLNQ9NQW6 1124 aa19.86■□□□□ 0.77
CLN3-260ENST00000637578 SUN2Q9UH99 717 aa19.86■□□□□ 0.77
CLN3-260ENST00000637578 LAMA1P25391 3075 aa19.86■□□□□ 0.77
CLN3-260ENST00000637578 TNRC6BQ9UPQ9 1833 aaKnown RBP19.85■□□□□ 0.77
CLN3-260ENST00000637578 GON4LQ3T8J9 2241 aa19.85■□□□□ 0.77
CLN3-260ENST00000637578 A0A1B0GVM2 712 aa19.85■□□□□ 0.77
CLN3-260ENST00000637578 LNP1A1A4G5 178 aa19.85■□□□□ 0.77
CLN3-260ENST00000637578 TCAF2A6NFQ2 919 aa19.85■□□□□ 0.77
CLN3-260ENST00000637578 PATE3B3GLJ2 98 aa19.85■□□□□ 0.77
CLN3-260ENST00000637578 KHNYNO15037 678 aaKnown RBP19.85■□□□□ 0.77
CLN3-260ENST00000637578 ITPKAP23677 461 aa19.85■□□□□ 0.77
CLN3-260ENST00000637578 PTP4A2Q12974 167 aa19.85■□□□□ 0.77
CLN3-260ENST00000637578 PLEKHG6Q3KR16 790 aa19.85■□□□□ 0.77
CLN3-260ENST00000637578 FIGNQ5HY92 759 aa19.85■□□□□ 0.77
CLN3-260ENST00000637578 STPG1Q5TH74 334 aa19.85■□□□□ 0.77
CLN3-260ENST00000637578 ARMCX6Q7L4S7 300 aa19.85■□□□□ 0.77
CLN3-260ENST00000637578 ZNF366Q8N895 744 aa19.85■□□□□ 0.77
CLN3-260ENST00000637578 BAP1Q92560 729 aa19.85■□□□□ 0.77
CLN3-260ENST00000637578 TBCBQ99426 244 aa19.85■□□□□ 0.77
CLN3-260ENST00000637578 WDCPQ9H6R7 721 aa19.85■□□□□ 0.77
CLN3-260ENST00000637578 ITIH6Q6UXX5 1313 aa19.85■□□□□ 0.77
CLN3-260ENST00000637578 ENDOD1O94919 500 aa19.84■□□□□ 0.77
CLN3-260ENST00000637578 SRPRAP08240 638 aaKnown RBP19.84■□□□□ 0.77
CLN3-260ENST00000637578 OXTRP30559 389 aa19.84■□□□□ 0.77
CLN3-260ENST00000637578 SULT1E1P49888 294 aa19.84■□□□□ 0.77
CLN3-260ENST00000637578 IRX4P78413 519 aa19.84■□□□□ 0.77
CLN3-260ENST00000637578 ARTNQ5T4W7 220 aa19.84■□□□□ 0.77
CLN3-260ENST00000637578 CXorf57Q6NSI4 855 aaKnown RBP19.84■□□□□ 0.77
CLN3-260ENST00000637578 SLC23A3Q6PIS1 610 aa19.84■□□□□ 0.77
CLN3-260ENST00000637578 C14orf80Q86SX3 495 aa19.84■□□□□ 0.77
CLN3-260ENST00000637578 CIR1Q86X95 450 aaPredicted RBP19.84■□□□□ 0.77
CLN3-260ENST00000637578 VSTM4Q8IW00 320 aa19.84■□□□□ 0.77
CLN3-260ENST00000637578 ZNF683Q8IZ20 524 aa19.84■□□□□ 0.77
CLN3-260ENST00000637578 APCDD1Q8J025 514 aa19.84■□□□□ 0.77
CLN3-260ENST00000637578 DEFB119Q8N690 84 aa19.84■□□□□ 0.77
CLN3-260ENST00000637578 C1orf74Q96LT6 269 aa19.84■□□□□ 0.77
CLN3-260ENST00000637578 NUP58Q9BVL2 599 aa19.84■□□□□ 0.77
CLN3-260ENST00000637578 TKTL2Q9H0I9 626 aa19.84■□□□□ 0.77
CLN3-260ENST00000637578 ERVW-1Q9UQF0 538 aa19.84■□□□□ 0.77
CLN3-260ENST00000637578 PAXBP1Q9Y5B6 917 aa19.84■□□□□ 0.77
CLN3-260ENST00000637578 FAM170AA1A519 330 aa19.83■□□□□ 0.77
CLN3-260ENST00000637578 DCDC2BA2VCK2 349 aa19.83■□□□□ 0.77
CLN3-260ENST00000637578 GOLGA8SH3BPF8 625 aa19.83■□□□□ 0.77
CLN3-260ENST00000637578 MOCS3O95396 460 aa19.83■□□□□ 0.77
CLN3-260ENST00000637578 CTSOP43234 321 aaPredicted RBP19.83■□□□□ 0.77
CLN3-260ENST00000637578 OXCT1P55809 520 aa19.83■□□□□ 0.77
CLN3-260ENST00000637578 GSCP56915 257 aaPredicted RBP19.83■□□□□ 0.77
CLN3-260ENST00000637578 CENPCQ03188 943 aa19.83■□□□□ 0.77
CLN3-260ENST00000637578 ZBTB16Q05516 673 aa19.83■□□□□ 0.77
CLN3-260ENST00000637578 DEUP1Q05D60 604 aa19.83■□□□□ 0.77
CLN3-260ENST00000637578 HNRNPA1L2Q32P51 320 aaKnown RBP19.83■□□□□ 0.77
CLN3-260ENST00000637578 ACBD5Q5T8D3 534 aaPredicted RBP19.83■□□□□ 0.77
CLN3-260ENST00000637578 SPECC1LQ69YQ0 1117 aa19.83■□□□□ 0.77
CLN3-260ENST00000637578 CADM4Q8NFZ8 388 aa19.83■□□□□ 0.77
CLN3-260ENST00000637578 SLC30A5Q8TAD4 765 aa19.83■□□□□ 0.77
CLN3-260ENST00000637578 ALG14Q96F25 216 aa19.83■□□□□ 0.77
CLN3-260ENST00000637578 TOE1Q96GM8 510 aaKnown RBP19.83■□□□□ 0.77
CLN3-260ENST00000637578 RPRD1AQ96P16 312 aaPredicted RBP19.83■□□□□ 0.77
CLN3-260ENST00000637578 VANGL2Q9ULK5 521 aa19.83■□□□□ 0.77
CLN3-260ENST00000637578 NDUFS2O75306 463 aa19.83■□□□□ 0.76
CLN3-260ENST00000637578 VASPP50552 380 aaPredicted RBP19.83■□□□□ 0.76
CLN3-260ENST00000637578 IRAK1P51617 712 aa19.83■□□□□ 0.76
CLN3-260ENST00000637578 ZNF75DP51815 510 aa19.83■□□□□ 0.76
CLN3-260ENST00000637578 ST8SIA6P61647 398 aa19.83■□□□□ 0.76
CLN3-260ENST00000637578 ECT2LQ008S8 904 aa19.83■□□□□ 0.76
CLN3-260ENST00000637578 CLEC16AQ2KHT3 1053 aa19.83■□□□□ 0.76
CLN3-260ENST00000637578 SND1Q7KZF4 910 aaKnown RBP eCLIP19.83■□□□□ 0.761e-7■■■□□ 15.8
CLN3-260ENST00000637578 PHF13Q86YI8 300 aaPredicted RBP19.83■□□□□ 0.76
CLN3-260ENST00000637578 FOXJ1Q92949 421 aa19.83■□□□□ 0.76
CLN3-260ENST00000637578 HSPA12BQ96MM6 686 aa19.83■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 48.2 ms