RNA–Protein interactions for RNA: ENST00000635578.1

SMARCB1-209, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, humanhuman

TSL 1 (best)

Gene SMARCB1, Length 242 nt, Biotype protein coding, Subcellular localisation Cytosol, Exosome, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1-209ENST00000635578 HIBCHQ6NVY1 386 aaPredicted RBP1.28□□□□□ -2.2
SMARCB1-209ENST00000635578 MZT2AQ6P582 158 aa1.28□□□□□ -2.2
SMARCB1-209ENST00000635578 PDXDC1Q6P996 788 aa1.28□□□□□ -2.2
SMARCB1-209ENST00000635578 CRTC1Q6UUV9 634 aa1.28□□□□□ -2.2
SMARCB1-209ENST00000635578 PTCHD4Q6ZW05 846 aa1.28□□□□□ -2.2
SMARCB1-209ENST00000635578 KRT27Q7Z3Y8 459 aa1.28□□□□□ -2.2
SMARCB1-209ENST00000635578 ATP11CQ8NB49 1132 aa1.28□□□□□ -2.2
SMARCB1-209ENST00000635578 VPS37AQ8NEZ2 397 aa1.28□□□□□ -2.2
SMARCB1-209ENST00000635578 PJA1Q8NG27 643 aa1.28□□□□□ -2.2
SMARCB1-209ENST00000635578 WIPF2Q8TF74 440 aaPredicted RBP1.28□□□□□ -2.2
SMARCB1-209ENST00000635578 ABHD5Q8WTS1 349 aa1.28□□□□□ -2.2
SMARCB1-209ENST00000635578 ZNF668Q96K58 619 aaPredicted RBP1.28□□□□□ -2.2
SMARCB1-209ENST00000635578 RIPOR3Q96MK2 946 aa1.28□□□□□ -2.2
SMARCB1-209ENST00000635578 MPHOSPH6Q99547 160 aaKnown RBP1.28□□□□□ -2.2
SMARCB1-209ENST00000635578 MYD88Q99836 296 aa1.28□□□□□ -2.2
SMARCB1-209ENST00000635578 TUBB6Q9BUF5 446 aa1.28□□□□□ -2.2
SMARCB1-209ENST00000635578 VN1R3Q9BXE9 311 aa1.28□□□□□ -2.2
SMARCB1-209ENST00000635578 NAA15Q9BXJ9 866 aaKnown RBP1.28□□□□□ -2.2
SMARCB1-209ENST00000635578 UNKQ9C0B0 810 aaKnown RBP1.28□□□□□ -2.2
SMARCB1-209ENST00000635578 BTBD1Q9H0C5 482 aa1.28□□□□□ -2.2
SMARCB1-209ENST00000635578 EPS8L2Q9H6S3 715 aa1.28□□□□□ -2.2
SMARCB1-209ENST00000635578 CERS4Q9HA82 394 aa1.28□□□□□ -2.2
SMARCB1-209ENST00000635578 XPNPEP3Q9NQH7 507 aa1.28□□□□□ -2.2
SMARCB1-209ENST00000635578 ARL8BQ9NVJ2 186 aa1.28□□□□□ -2.2
SMARCB1-209ENST00000635578 DNMT3BQ9UBC3 853 aaKnown RBP1.28□□□□□ -2.2
SMARCB1-209ENST00000635578 DNAJB11Q9UBS4 358 aa1.28□□□□□ -2.2
SMARCB1-209ENST00000635578 STEAP1Q9UHE8 339 aa1.28□□□□□ -2.2
SMARCB1-209ENST00000635578 ANAPC4Q9UJX5 808 aa1.28□□□□□ -2.2
SMARCB1-209ENST00000635578 ZMYND8Q9ULU4 1186 aaPredicted RBP1.28□□□□□ -2.2
SMARCB1-209ENST00000635578 MAFFQ9ULX9 164 aa1.28□□□□□ -2.2
SMARCB1-209ENST00000635578 MAN2B2Q9Y2E5 1009 aa1.28□□□□□ -2.2
SMARCB1-209ENST00000635578 PCDHB2Q9Y5E7 798 aa1.28□□□□□ -2.2
SMARCB1-209ENST00000635578 PCDHGB2Q9Y5G2 931 aa1.28□□□□□ -2.2
SMARCB1-209ENST00000635578 INSL5Q9Y5Q6 135 aa1.28□□□□□ -2.2
SMARCB1-209ENST00000635578 HEMK1Q9Y5R4 338 aaPredicted RBP1.28□□□□□ -2.2
SMARCB1-209ENST00000635578 DISP3Q9P2K9 1392 aa1.28□□□□□ -2.2
SMARCB1-209ENST00000635578 TNIKQ9UKE5 1360 aa1.28□□□□□ -2.2
SMARCB1-209ENST00000635578 C9orf84Q5VXU9 1444 aa1.28□□□□□ -2.2
SMARCB1-209ENST00000635578 GOLGA3Q08378 1498 aa1.28□□□□□ -2.2
SMARCB1-209ENST00000635578 NEO1Q92859 1461 aa1.28□□□□□ -2.2
SMARCB1-209ENST00000635578 PRXQ9BXM0 1461 aa1.28□□□□□ -2.2
SMARCB1-209ENST00000635578 ABCC3O15438 1527 aa1.28□□□□□ -2.2
SMARCB1-209ENST00000635578 LMTK2Q8IWU2 1503 aa1.28□□□□□ -2.2
SMARCB1-209ENST00000635578 ASXL1Q8IXJ9 1541 aa1.28□□□□□ -2.2
SMARCB1-209ENST00000635578 SETBP1Q9Y6X0 1596 aa1.28□□□□□ -2.2
SMARCB1-209ENST00000635578 LAMC1P11047 1609 aa1.28□□□□□ -2.2
SMARCB1-209ENST00000635578 C4AP0C0L4 1744 aa1.28□□□□□ -2.2
SMARCB1-209ENST00000635578 C4BP0C0L5 1744 aa1.28□□□□□ -2.2
SMARCB1-209ENST00000635578 PARP4Q9UKK3 1724 aaKnown RBP1.28□□□□□ -2.2
SMARCB1-209ENST00000635578 KIAA1210Q9ULL0 1709 aa1.28□□□□□ -2.2
SMARCB1-209ENST00000635578 BTAF1O14981 1849 aa1.28□□□□□ -2.2
SMARCB1-209ENST00000635578 ITGB4P16144 1822 aa1.28□□□□□ -2.2
SMARCB1-209ENST00000635578 NOTCH2Q04721 2471 aa1.28□□□□□ -2.2
SMARCB1-209ENST00000635578 BRCA1P38398 1863 aaKnown RBP1.27□□□□□ -2.21
SMARCB1-209ENST00000635578 COL24A1Q17RW2 1714 aa1.27□□□□□ -2.21
SMARCB1-209ENST00000635578 QSER1Q2KHR3 1735 aa1.27□□□□□ -2.21
SMARCB1-209ENST00000635578 MON2Q7Z3U7 1717 aa1.27□□□□□ -2.21
SMARCB1-209ENST00000635578 ANKRD26Q9UPS8 1709 aa1.27□□□□□ -2.21
SMARCB1-209ENST00000635578 TOGARAM1Q9Y4F4 1720 aa1.27□□□□□ -2.21
SMARCB1-209ENST00000635578 COL22A1Q8NFW1 1626 aaPredicted RBP1.27□□□□□ -2.21
SMARCB1-209ENST00000635578 GLI3P10071 1580 aa1.27□□□□□ -2.21
SMARCB1-209ENST00000635578 NRKQ7Z2Y5 1582 aa1.27□□□□□ -2.21
SMARCB1-209ENST00000635578 DENND4BO75064 1496 aaPredicted RBP1.27□□□□□ -2.21
SMARCB1-209ENST00000635578 CCDC18Q5T9S5 1454 aa1.27□□□□□ -2.21
SMARCB1-209ENST00000635578 FYCO1Q9BQS8 1478 aa1.27□□□□□ -2.21
SMARCB1-209ENST00000635578 PTPRGP23470 1445 aa1.27□□□□□ -2.21
SMARCB1-209ENST00000635578 NCOA1Q15788 1441 aa1.27□□□□□ -2.21
SMARCB1-209ENST00000635578 CD109Q6YHK3 1445 aa1.27□□□□□ -2.21
SMARCB1-209ENST00000635578 TRAPPC8Q9Y2L5 1435 aa1.27□□□□□ -2.21
SMARCB1-209ENST00000635578 PNMA6EA0A0J9YXQ4 647 aa1.27□□□□□ -2.21
SMARCB1-209ENST00000635578 ANTXRLA6NF34 631 aa1.27□□□□□ -2.21
SMARCB1-209ENST00000635578 ZNF814B7Z6K7 855 aa1.27□□□□□ -2.21
SMARCB1-209ENST00000635578 FYB1O15117 783 aa1.27□□□□□ -2.21
SMARCB1-209ENST00000635578 TMPRSS11DO60235 418 aa1.27□□□□□ -2.21
SMARCB1-209ENST00000635578 UGDHO60701 494 aa1.27□□□□□ -2.21
SMARCB1-209ENST00000635578 WDR47O94967 919 aa1.27□□□□□ -2.21
SMARCB1-209ENST00000635578 PLAUP00749 431 aa1.27□□□□□ -2.21
SMARCB1-209ENST00000635578 SERPINB2P05120 415 aa1.27□□□□□ -2.21
SMARCB1-209ENST00000635578 TRIM27P14373 513 aa1.27□□□□□ -2.21
SMARCB1-209ENST00000635578 IL1R1P14778 569 aa1.27□□□□□ -2.21
SMARCB1-209ENST00000635578 ABCB4P21439 1286 aa1.27□□□□□ -2.21
SMARCB1-209ENST00000635578 FGFR2P21802 821 aa1.27□□□□□ -2.21
SMARCB1-209ENST00000635578 RBL1P28749 1068 aa1.27□□□□□ -2.21
SMARCB1-209ENST00000635578 AKT1P31749 480 aa1.27□□□□□ -2.21
SMARCB1-209ENST00000635578 TECP42680 631 aa1.27□□□□□ -2.21
SMARCB1-209ENST00000635578 POLD2P49005 469 aa1.27□□□□□ -2.21
SMARCB1-209ENST00000635578 VPS41P49754 854 aa1.27□□□□□ -2.21
SMARCB1-209ENST00000635578 AK2P54819 239 aa1.27□□□□□ -2.21
SMARCB1-209ENST00000635578 TIRAPP58753 221 aa1.27□□□□□ -2.21
SMARCB1-209ENST00000635578 ERVFC1-1P60608 527 aa1.27□□□□□ -2.21
SMARCB1-209ENST00000635578 EGR4Q05215 589 aa1.27□□□□□ -2.21
SMARCB1-209ENST00000635578 DEUP1Q05D60 604 aa1.27□□□□□ -2.21
SMARCB1-209ENST00000635578 ZNF543Q08ER8 600 aa1.27□□□□□ -2.21
SMARCB1-209ENST00000635578 CCDC15Q0P6D6 951 aa1.27□□□□□ -2.21
SMARCB1-209ENST00000635578 SEMA3BQ13214 749 aa1.27□□□□□ -2.21
SMARCB1-209ENST00000635578 HDAC1Q13547 482 aaPredicted RBP1.27□□□□□ -2.21
SMARCB1-209ENST00000635578 PMS2P11Q13670 270 aa1.27□□□□□ -2.21
SMARCB1-209ENST00000635578 GALEQ14376 348 aa1.27□□□□□ -2.21
SMARCB1-209ENST00000635578 HLTFQ14527 1009 aaKnown RBP eCLIP1.27□□□□□ -2.21
SMARCB1-209ENST00000635578 STARD3Q14849 445 aa1.27□□□□□ -2.21
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms