RNA–Protein interactions for RNA: ENST00000618207.4

CIITA-212, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 5 BASIC

Gene CIITA, Length 2,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-212ENST00000618207 NEK3P51956 506 aa12.72□□□□□ -0.37
CIITA-212ENST00000618207 CRYMQ14894 314 aa12.72□□□□□ -0.37
CIITA-212ENST00000618207 PARP6Q2NL67 630 aa12.72□□□□□ -0.37
CIITA-212ENST00000618207 CLLU1OSQ5K130 101 aa12.72□□□□□ -0.37
CIITA-212ENST00000618207 LGSNQ5TDP6 509 aa12.72□□□□□ -0.37
CIITA-212ENST00000618207 PSTKQ8IV42 348 aaKnown RBP12.72□□□□□ -0.37
CIITA-212ENST00000618207 ATAD1Q8NBU5 361 aa12.72□□□□□ -0.37
CIITA-212ENST00000618207 SMC1BQ8NDV3 1235 aa12.72□□□□□ -0.37
CIITA-212ENST00000618207 SPATA22Q8NHS9 363 aa12.72□□□□□ -0.37
CIITA-212ENST00000618207 LRRC39Q96DD0 335 aa12.72□□□□□ -0.37
CIITA-212ENST00000618207 MFSD3Q96ES6 412 aa12.72□□□□□ -0.37
CIITA-212ENST00000618207 CSNK1G1Q9HCP0 422 aa12.72□□□□□ -0.37
CIITA-212ENST00000618207 CD248Q9HCU0 757 aa12.72□□□□□ -0.37
CIITA-212ENST00000618207 PNPLA8Q9NP80 782 aa12.72□□□□□ -0.37
CIITA-212ENST00000618207 PCDH10Q9P2E7 1040 aa12.72□□□□□ -0.37
CIITA-212ENST00000618207 HAO1Q9UJM8 370 aa12.72□□□□□ -0.37
CIITA-212ENST00000618207 A8MUI8 341 aa12.71□□□□□ -0.37
CIITA-212ENST00000618207 TRDMT1O14717 391 aaKnown RBP12.71□□□□□ -0.37
CIITA-212ENST00000618207 RASSF9O75901 435 aa12.71□□□□□ -0.37
CIITA-212ENST00000618207 TSHRP16473 764 aa12.71□□□□□ -0.37
CIITA-212ENST00000618207 SAT1P21673 171 aa12.71□□□□□ -0.37
CIITA-212ENST00000618207 CD68P34810 354 aaPredicted RBP12.71□□□□□ -0.37
CIITA-212ENST00000618207 ETV4P43268 484 aa12.71□□□□□ -0.37
CIITA-212ENST00000618207 PDE1BQ01064 536 aa12.71□□□□□ -0.37
CIITA-212ENST00000618207 SEMA3BQ13214 749 aa12.71□□□□□ -0.37
CIITA-212ENST00000618207 SETDB1Q15047 1291 aa12.71□□□□□ -0.37
CIITA-212ENST00000618207 C11orf91Q3C1V1 193 aa12.71□□□□□ -0.37
CIITA-212ENST00000618207 LRRC8BQ6P9F7 803 aa12.71□□□□□ -0.37
CIITA-212ENST00000618207 SH2D5Q6ZV89 423 aa12.71□□□□□ -0.37
CIITA-212ENST00000618207 MTDHQ86UE4 582 aaKnown RBP12.71□□□□□ -0.37
CIITA-212ENST00000618207 GRAMD1AQ96CP6 724 aa12.71□□□□□ -0.37
CIITA-212ENST00000618207 FCRL3Q96P31 734 aaPredicted RBP12.71□□□□□ -0.37
CIITA-212ENST00000618207 FAM193BQ96PV7 902 aaPredicted RBP12.71□□□□□ -0.37
CIITA-212ENST00000618207 ATXN3LQ9H3M9 355 aa12.71□□□□□ -0.37
CIITA-212ENST00000618207 ZFATQ9P243 1243 aa12.71□□□□□ -0.37
CIITA-212ENST00000618207 USH1CQ9Y6N9 552 aa12.71□□□□□ -0.37
CIITA-212ENST00000618207 NUMBLQ9Y6R0 609 aa12.71□□□□□ -0.37
CIITA-212ENST00000618207 A0A1W2PQH9 124 aa12.71□□□□□ -0.37
CIITA-212ENST00000618207 ARHGAP42A6NI28 874 aa12.71□□□□□ -0.37
CIITA-212ENST00000618207 FAM159BA6NKW6 160 aa12.71□□□□□ -0.37
CIITA-212ENST00000618207 MT-CYBP00156 380 aaPredicted RBP12.71□□□□□ -0.37
CIITA-212ENST00000618207 F9P00740 461 aa12.71□□□□□ -0.37
CIITA-212ENST00000618207 HMBSP08397 361 aa12.71□□□□□ -0.37
CIITA-212ENST00000618207 CXCR3P49682 368 aa12.71□□□□□ -0.37
CIITA-212ENST00000618207 SLC18A1P54219 525 aa12.71□□□□□ -0.37
CIITA-212ENST00000618207 TMPRSS15P98073 1019 aa12.71□□□□□ -0.37
CIITA-212ENST00000618207 SLC18A2Q05940 514 aa12.71□□□□□ -0.37
CIITA-212ENST00000618207 PPM1JQ5JR12 505 aa12.71□□□□□ -0.37
CIITA-212ENST00000618207 FYB2Q5VWT5 728 aa12.71□□□□□ -0.37
CIITA-212ENST00000618207 C4orf22Q6V702 233 aa12.71□□□□□ -0.37
CIITA-212ENST00000618207 PDZD4Q76G19 769 aaPredicted RBP12.71□□□□□ -0.37
CIITA-212ENST00000618207 NLRP9Q7RTR0 991 aa12.71□□□□□ -0.37
CIITA-212ENST00000618207 RASSF3Q86WH2 238 aa12.71□□□□□ -0.37
CIITA-212ENST00000618207 LINC01599Q8WXQ3 324 aa12.71□□□□□ -0.37
CIITA-212ENST00000618207 NTAN1Q96AB6 310 aa12.71□□□□□ -0.37
CIITA-212ENST00000618207 SLC9A7Q96T83 725 aa12.71□□□□□ -0.37
CIITA-212ENST00000618207 AGAP2Q99490 1192 aa12.71□□□□□ -0.37
CIITA-212ENST00000618207 TXNDC16Q9P2K2 825 aa12.71□□□□□ -0.37
CIITA-212ENST00000618207 PAGE1O75459 146 aa12.7□□□□□ -0.38
CIITA-212ENST00000618207 TBX18O95935 607 aa12.7□□□□□ -0.38
CIITA-212ENST00000618207 GARSP41250 739 aaKnown RBP12.7□□□□□ -0.38
CIITA-212ENST00000618207 BNIP1Q12981 228 aa12.7□□□□□ -0.38
CIITA-212ENST00000618207 CHI3L2Q15782 390 aa12.7□□□□□ -0.38
CIITA-212ENST00000618207 TRIM71Q2Q1W2 868 aaKnown RBP12.7□□□□□ -0.38
CIITA-212ENST00000618207 DCLRE1AQ6PJP8 1040 aa12.7□□□□□ -0.38
CIITA-212ENST00000618207 CMC1Q7Z7K0 106 aa12.7□□□□□ -0.38
CIITA-212ENST00000618207 C10orf82Q8WW14 230 aa12.7□□□□□ -0.38
CIITA-212ENST00000618207 TBC1D31Q96DN5 1066 aa12.7□□□□□ -0.38
CIITA-212ENST00000618207 SUSD3Q96L08 255 aa12.7□□□□□ -0.38
CIITA-212ENST00000618207 ZNF778Q96MU6 729 aa12.7□□□□□ -0.38
CIITA-212ENST00000618207 GORASP1Q9BQQ3 440 aa12.7□□□□□ -0.38
CIITA-212ENST00000618207 GPBP1L1Q9HC44 474 aaPredicted RBP12.7□□□□□ -0.38
CIITA-212ENST00000618207 STARD7Q9NQZ5 370 aa12.7□□□□□ -0.38
CIITA-212ENST00000618207 FBXO6Q9NRD1 293 aaPredicted RBP12.7□□□□□ -0.38
CIITA-212ENST00000618207 OSER1Q9NX31 292 aa12.7□□□□□ -0.38
CIITA-212ENST00000618207 SLC27A5Q9Y2P5 690 aa12.7□□□□□ -0.38
CIITA-212ENST00000618207 BPTFQ12830 3046 aa12.7□□□□□ -0.38
CIITA-212ENST00000618207 C9IYK1 514 aa12.7□□□□□ -0.38
CIITA-212ENST00000618207 M0QZQ0 153 aa12.7□□□□□ -0.38
CIITA-212ENST00000618207 TPP1O14773 563 aa12.7□□□□□ -0.38
CIITA-212ENST00000618207 TADA2AO75478 443 aa12.7□□□□□ -0.38
CIITA-212ENST00000618207 DNAJC8O75937 253 aaPredicted RBP12.7□□□□□ -0.38
CIITA-212ENST00000618207 TROVE2P10155 538 aaKnown RBP eCLIP12.7□□□□□ -0.38
CIITA-212ENST00000618207 TAF1BQ53T94 588 aaPredicted RBP12.7□□□□□ -0.38
CIITA-212ENST00000618207 RNF43Q68DV7 783 aa12.7□□□□□ -0.38
CIITA-212ENST00000618207 TFAP2DQ7Z6R9 452 aa12.7□□□□□ -0.38
CIITA-212ENST00000618207 ZNF598Q86UK7 904 aaKnown RBP12.7□□□□□ -0.38
CIITA-212ENST00000618207 ZNF354CQ86Y25 554 aa12.7□□□□□ -0.38
CIITA-212ENST00000618207 MIB1Q86YT6 1006 aa12.7□□□□□ -0.38
CIITA-212ENST00000618207 FCRL2Q96LA5 508 aaPredicted RBP12.7□□□□□ -0.38
CIITA-212ENST00000618207 VPS11Q9H270 941 aa12.7□□□□□ -0.38
CIITA-212ENST00000618207 SSU72Q9NP77 194 aaKnown RBP12.7□□□□□ -0.38
CIITA-212ENST00000618207 CHRAC1Q9NRG0 131 aa12.7□□□□□ -0.38
CIITA-212ENST00000618207 TBC1D13Q9NVG8 400 aa12.7□□□□□ -0.38
CIITA-212ENST00000618207 ZNF358Q9NW07 568 aa12.7□□□□□ -0.38
CIITA-212ENST00000618207 MOCS1Q9NZB8 636 aa12.7□□□□□ -0.38
CIITA-212ENST00000618207 VANGL2Q9ULK5 521 aa12.7□□□□□ -0.38
CIITA-212ENST00000618207 PLLPQ9Y342 182 aa12.7□□□□□ -0.38
CIITA-212ENST00000618207 FAM237BA0A1B0GVD1 139 aa12.7□□□□□ -0.38
CIITA-212ENST00000618207 KRT16P08779 473 aa12.7□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms