RNA–Protein interactions for RNA: ENST00000616974.1

LINC00540-202, long intergenic non-protein coding RNA 540, humanhuman

TSL 1 (best)

Gene LINC00540, Length 2,143 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-202ENST00000616974 VPS36Q86VN1 386 aa13.91□□□□□ -0.18
LINC00540-202ENST00000616974 SPEM1Q8N4L4 309 aa13.91□□□□□ -0.18
LINC00540-202ENST00000616974 DESI2Q9BSY9 194 aa13.91□□□□□ -0.18
LINC00540-202ENST00000616974 ZNHIT6Q9NWK9 470 aaKnown RBP13.91□□□□□ -0.18
LINC00540-202ENST00000616974 OR12D3Q9UGF7 316 aa13.91□□□□□ -0.18
LINC00540-202ENST00000616974 DUSP10Q9Y6W6 482 aa13.91□□□□□ -0.18
LINC00540-202ENST00000616974 WDFY3Q8IZQ1 3526 aa13.9□□□□□ -0.18
LINC00540-202ENST00000616974 A0A1W2PQF6 199 aa13.9□□□□□ -0.18
LINC00540-202ENST00000616974 H0Y626 953 aa13.9□□□□□ -0.18
LINC00540-202ENST00000616974 F9P00740 461 aa13.9□□□□□ -0.18
LINC00540-202ENST00000616974 PABPC1P11940 636 aaKnown RBP13.9□□□□□ -0.18
LINC00540-202ENST00000616974 AMPD2Q01433 879 aa13.9□□□□□ -0.18
LINC00540-202ENST00000616974 CDH18Q13634 790 aa13.9□□□□□ -0.18
LINC00540-202ENST00000616974 LRRC32Q14392 662 aa13.9□□□□□ -0.18
LINC00540-202ENST00000616974 SND1Q7KZF4 910 aaKnown RBP eCLIP13.9□□□□□ -0.18
LINC00540-202ENST00000616974 TP53INP2Q8IXH6 220 aa13.9□□□□□ -0.18
LINC00540-202ENST00000616974 ZNF564Q8TBZ8 553 aaPredicted RBP13.9□□□□□ -0.18
LINC00540-202ENST00000616974 SNRNP25Q9BV90 132 aaKnown RBP13.9□□□□□ -0.18
LINC00540-202ENST00000616974 CD248Q9HCU0 757 aa13.9□□□□□ -0.18
LINC00540-202ENST00000616974 PRMT8Q9NR22 394 aaPredicted RBP13.9□□□□□ -0.18
LINC00540-202ENST00000616974 KLHL11Q9NVR0 708 aa13.9□□□□□ -0.18
LINC00540-202ENST00000616974 FZD10Q9ULW2 581 aa13.9□□□□□ -0.18
LINC00540-202ENST00000616974 NCAM2O15394 837 aa13.9□□□□□ -0.18
LINC00540-202ENST00000616974 LAMTOR5O43504 91 aa13.9□□□□□ -0.18
LINC00540-202ENST00000616974 SP9P0CG40 484 aa13.9□□□□□ -0.18
LINC00540-202ENST00000616974 SLC2A3P11169 496 aa13.9□□□□□ -0.18
LINC00540-202ENST00000616974 VAV1P15498 845 aa13.9□□□□□ -0.18
LINC00540-202ENST00000616974 PRKCHP24723 683 aa13.9□□□□□ -0.18
LINC00540-202ENST00000616974 DMC1Q14565 340 aa13.9□□□□□ -0.18
LINC00540-202ENST00000616974 ZNF234Q14588 700 aa13.9□□□□□ -0.18
LINC00540-202ENST00000616974 ANKS1BQ7Z6G8 1248 aa13.9□□□□□ -0.18
LINC00540-202ENST00000616974 CHPFQ8IZ52 775 aa13.9□□□□□ -0.18
LINC00540-202ENST00000616974 FIBINQ8TAL6 211 aa13.9□□□□□ -0.18
LINC00540-202ENST00000616974 ALG14Q96F25 216 aa13.9□□□□□ -0.18
LINC00540-202ENST00000616974 KCTD15Q96SI1 283 aaPredicted RBP13.9□□□□□ -0.18
LINC00540-202ENST00000616974 TPSD1Q9BZJ3 242 aa13.9□□□□□ -0.18
LINC00540-202ENST00000616974 GRPEL1Q9HAV7 217 aa13.9□□□□□ -0.18
LINC00540-202ENST00000616974 ELOVL2Q9NXB9 296 aa13.9□□□□□ -0.18
LINC00540-202ENST00000616974 CTTNBP2NLQ9P2B4 639 aa13.9□□□□□ -0.18
LINC00540-202ENST00000616974 INVSQ9Y283 1065 aa13.9□□□□□ -0.18
LINC00540-202ENST00000616974 CNOT1A5YKK6 2376 aaKnown RBP13.9□□□□□ -0.18
LINC00540-202ENST00000616974 IGLV3-10A0A075B6K4 115 aa13.89□□□□□ -0.19
LINC00540-202ENST00000616974 TMEM110-MUSTN1A8MSY1 372 aa13.89□□□□□ -0.19
LINC00540-202ENST00000616974 CHURC1-FNTBB4DL54 471 aa13.89□□□□□ -0.19
LINC00540-202ENST00000616974 CREB3O43889 395 aa13.89□□□□□ -0.19
LINC00540-202ENST00000616974 SNAP91O60641 907 aa13.89□□□□□ -0.19
LINC00540-202ENST00000616974 FECHP22830 423 aa13.89□□□□□ -0.19
LINC00540-202ENST00000616974 CXCL12P48061 93 aa13.89□□□□□ -0.19
LINC00540-202ENST00000616974 FNTBP49356 437 aa13.89□□□□□ -0.19
LINC00540-202ENST00000616974 TAS2R40P59535 323 aa13.89□□□□□ -0.19
LINC00540-202ENST00000616974 C5orf22Q49AR2 442 aa13.89□□□□□ -0.19
LINC00540-202ENST00000616974 MBLAC2Q68D91 279 aa13.89□□□□□ -0.19
LINC00540-202ENST00000616974 C1orf228Q6PIY5 440 aa13.89□□□□□ -0.19
LINC00540-202ENST00000616974 KIAA0907Q7Z7F0 614 aaPredicted RBP13.89□□□□□ -0.19
LINC00540-202ENST00000616974 SLFN11Q7Z7L1 901 aa13.89□□□□□ -0.19
LINC00540-202ENST00000616974 OR7D4Q8NG98 312 aa13.89□□□□□ -0.19
LINC00540-202ENST00000616974 SLC35G2Q8TBE7 412 aa13.89□□□□□ -0.19
LINC00540-202ENST00000616974 ZWILCHQ9H900 591 aa13.89□□□□□ -0.19
LINC00540-202ENST00000616974 TRIM10Q9UDY6 481 aa13.89□□□□□ -0.19
LINC00540-202ENST00000616974 SLC12A6Q9UHW9 1150 aa13.89□□□□□ -0.19
LINC00540-202ENST00000616974 DNAI1Q9UI46 699 aa13.89□□□□□ -0.19
LINC00540-202ENST00000616974 SLCO3A1Q9UIG8 710 aa13.89□□□□□ -0.19
LINC00540-202ENST00000616974 STARD13Q9Y3M8 1113 aa13.89□□□□□ -0.19
LINC00540-202ENST00000616974 A0A1B0GVM2 712 aa13.88□□□□□ -0.19
LINC00540-202ENST00000616974 TCAF2A6NFQ2 919 aa13.88□□□□□ -0.19
LINC00540-202ENST00000616974 PALM2-AKAP2B1ALY0 433 aaPredicted RBP13.88□□□□□ -0.19
LINC00540-202ENST00000616974 DCLK1O15075 740 aa13.88□□□□□ -0.19
LINC00540-202ENST00000616974 MT-CO1P00395 513 aa13.88□□□□□ -0.19
LINC00540-202ENST00000616974 CD48P09326 243 aa13.88□□□□□ -0.19
LINC00540-202ENST00000616974 H2AFZP0C0S5 128 aa13.88□□□□□ -0.19
LINC00540-202ENST00000616974 CDC25BP30305 580 aa13.88□□□□□ -0.19
LINC00540-202ENST00000616974 SEMA3BQ13214 749 aa13.88□□□□□ -0.19
LINC00540-202ENST00000616974 CRY1Q16526 586 aa13.88□□□□□ -0.19
LINC00540-202ENST00000616974 TSR1Q2NL82 804 aaKnown RBP13.88□□□□□ -0.19
LINC00540-202ENST00000616974 PLEKHG6Q3KR16 790 aa13.88□□□□□ -0.19
LINC00540-202ENST00000616974 PITRM1Q5JRX3 1037 aa13.88□□□□□ -0.19
LINC00540-202ENST00000616974 MPP7Q5T2T1 576 aa13.88□□□□□ -0.19
LINC00540-202ENST00000616974 ANO7Q6IWH7 933 aa13.88□□□□□ -0.19
LINC00540-202ENST00000616974 RWDD4Q6NW29 188 aaKnown RBP13.88□□□□□ -0.19
LINC00540-202ENST00000616974 LEKR1Q6ZMV7 388 aa13.88□□□□□ -0.19
LINC00540-202ENST00000616974 H2AFVQ71UI9 128 aa13.88□□□□□ -0.19
LINC00540-202ENST00000616974 MDGA1Q8NFP4 955 aa13.88□□□□□ -0.19
LINC00540-202ENST00000616974 MRGPRX3Q96LB0 322 aa13.88□□□□□ -0.19
LINC00540-202ENST00000616974 PANX2Q96RD6 677 aa13.88□□□□□ -0.19
LINC00540-202ENST00000616974 HAPLN3Q96S86 360 aa13.88□□□□□ -0.19
LINC00540-202ENST00000616974 LACRTQ9GZZ8 138 aa13.88□□□□□ -0.19
LINC00540-202ENST00000616974 MMP17Q9ULZ9 603 aa13.88□□□□□ -0.19
LINC00540-202ENST00000616974 OR51B4Q9Y5P0 310 aa13.88□□□□□ -0.19
LINC00540-202ENST00000616974 SCINQ9Y6U3 715 aa13.88□□□□□ -0.19
LINC00540-202ENST00000616974 DRGXA6NNA5 263 aa13.88□□□□□ -0.19
LINC00540-202ENST00000616974 RNF103O00237 685 aa13.88□□□□□ -0.19
LINC00540-202ENST00000616974 MYBL1P10243 752 aa13.88□□□□□ -0.19
LINC00540-202ENST00000616974 GJC1P36383 396 aa13.88□□□□□ -0.19
LINC00540-202ENST00000616974 ACVRL1P37023 503 aa13.88□□□□□ -0.19
LINC00540-202ENST00000616974 TNFRSF4P43489 277 aa13.88□□□□□ -0.19
LINC00540-202ENST00000616974 SLC25A11Q02978 314 aaKnown RBP13.88□□□□□ -0.19
LINC00540-202ENST00000616974 NLRP14Q86W24 1093 aa13.88□□□□□ -0.19
LINC00540-202ENST00000616974 FAM160A2Q8N612 972 aaPredicted RBP13.88□□□□□ -0.19
LINC00540-202ENST00000616974 KLC2Q9H0B6 622 aa13.88□□□□□ -0.19
LINC00540-202ENST00000616974 DHX35Q9H5Z1 703 aaKnown RBP13.88□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 45.3 ms