RNA–Protein interactions for RNA: ENST00000593223.1

SMAD4-216, Transcript of SMAD family member 4, humanhuman

TSL 3

Gene SMAD4, Length 568 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-216ENST00000593223 TBC1D3DA0A087WVF3 549 aa5.5□□□□□ -1.53
SMAD4-216ENST00000593223 TBC1D3IA0A087WXS9 549 aa5.5□□□□□ -1.53
SMAD4-216ENST00000593223 TBC1D3EA0A087X179 549 aa5.5□□□□□ -1.53
SMAD4-216ENST00000593223 TBC1D3KA0A087X1G2 549 aa5.5□□□□□ -1.53
SMAD4-216ENST00000593223 hCG_1642624A0A1W2PR95 340 aa5.5□□□□□ -1.53
SMAD4-216ENST00000593223 TBC1D3BA6NDS4 549 aa5.5□□□□□ -1.53
SMAD4-216ENST00000593223 TBC1D3FA6NER0 549 aaPredicted RBP5.5□□□□□ -1.53
SMAD4-216ENST00000593223 TBC1D3LB9A6J9 549 aa5.5□□□□□ -1.53
SMAD4-216ENST00000593223 M0QYT0 321 aa5.5□□□□□ -1.53
SMAD4-216ENST00000593223 PRYO14603 147 aa5.5□□□□□ -1.53
SMAD4-216ENST00000593223 INPPL1O15357 1258 aa5.5□□□□□ -1.53
SMAD4-216ENST00000593223 NKX2-8O15522 239 aa5.5□□□□□ -1.53
SMAD4-216ENST00000593223 TBC1D3HP0C7X1 549 aa5.5□□□□□ -1.53
SMAD4-216ENST00000593223 STAT6P42226 847 aa5.5□□□□□ -1.53
SMAD4-216ENST00000593223 SF3A3Q12874 501 aaKnown RBP eCLIP5.5□□□□□ -1.53
SMAD4-216ENST00000593223 GLE1Q53GS7 698 aaKnown RBP5.5□□□□□ -1.53
SMAD4-216ENST00000593223 TBC1D3GQ6DHY5 549 aa5.5□□□□□ -1.53
SMAD4-216ENST00000593223 SULT6B1Q6IMI4 303 aa5.5□□□□□ -1.53
SMAD4-216ENST00000593223 TBC1D3CQ6IPX1 549 aa5.5□□□□□ -1.53
SMAD4-216ENST00000593223 SLC2A7Q6PXP3 512 aa5.5□□□□□ -1.53
SMAD4-216ENST00000593223 TBC1D3Q8IZP1 549 aaPredicted RBP5.5□□□□□ -1.53
SMAD4-216ENST00000593223 PAF1Q8N7H5 531 aa5.5□□□□□ -1.53
SMAD4-216ENST00000593223 ZNF398Q8TD17 642 aa5.5□□□□□ -1.53
SMAD4-216ENST00000593223 RSC1A1Q92681 617 aa5.5□□□□□ -1.53
SMAD4-216ENST00000593223 CELF1Q92879 486 aaKnown RBP5.5□□□□□ -1.53
SMAD4-216ENST00000593223 CUL5Q93034 780 aa5.5□□□□□ -1.53
SMAD4-216ENST00000593223 EID2BQ96D98 161 aa5.5□□□□□ -1.53
SMAD4-216ENST00000593223 ZHX3Q9H4I2 956 aa5.5□□□□□ -1.53
SMAD4-216ENST00000593223 KCNK9Q9NPC2 374 aa5.5□□□□□ -1.53
SMAD4-216ENST00000593223 TRPC5Q9UL62 973 aaPredicted RBP5.5□□□□□ -1.53
SMAD4-216ENST00000593223 SHPRHQ149N8 1683 aa5.5□□□□□ -1.53
SMAD4-216ENST00000593223 KDM5DQ9BY66 1539 aa5.49□□□□□ -1.53
SMAD4-216ENST00000593223 C16orf96A6NNT2 1141 aa5.49□□□□□ -1.53
SMAD4-216ENST00000593223 EFCAB8A8MWE9 144 aa5.49□□□□□ -1.53
SMAD4-216ENST00000593223 TIMM44O43615 452 aa5.49□□□□□ -1.53
SMAD4-216ENST00000593223 USP12O75317 370 aa5.49□□□□□ -1.53
SMAD4-216ENST00000593223 LARGE1O95461 756 aa5.49□□□□□ -1.53
SMAD4-216ENST00000593223 VDRP11473 427 aa5.49□□□□□ -1.53
SMAD4-216ENST00000593223 PEPDP12955 493 aa5.49□□□□□ -1.53
SMAD4-216ENST00000593223 GRK5P34947 590 aa5.49□□□□□ -1.53
SMAD4-216ENST00000593223 AP2B1P63010 937 aa5.49□□□□□ -1.53
SMAD4-216ENST00000593223 MTA1Q13330 715 aa5.49□□□□□ -1.53
SMAD4-216ENST00000593223 COLEC12Q5KU26 742 aa5.49□□□□□ -1.53
SMAD4-216ENST00000593223 ZNF626Q68DY1 528 aa5.49□□□□□ -1.53
SMAD4-216ENST00000593223 DHRS13Q6UX07 377 aa5.49□□□□□ -1.53
SMAD4-216ENST00000593223 RAB11FIP2Q7L804 512 aa5.49□□□□□ -1.53
SMAD4-216ENST00000593223 CACNA2D3Q8IZS8 1091 aa5.49□□□□□ -1.53
SMAD4-216ENST00000593223 MYCT1Q8N699 235 aa5.49□□□□□ -1.53
SMAD4-216ENST00000593223 C1orf131Q8NDD1 294 aaKnown RBP5.49□□□□□ -1.53
SMAD4-216ENST00000593223 OR1N1Q8NGS0 311 aa5.49□□□□□ -1.53
SMAD4-216ENST00000593223 PRSS3P2Q8NHM4 247 aa5.49□□□□□ -1.53
SMAD4-216ENST00000593223 ASB12Q8WXK4 309 aa5.49□□□□□ -1.53
SMAD4-216ENST00000593223 RUBCNQ92622 972 aa5.49□□□□□ -1.53
SMAD4-216ENST00000593223 FCRL5Q96RD9 977 aa5.49□□□□□ -1.53
SMAD4-216ENST00000593223 MECRQ9BV79 373 aa5.49□□□□□ -1.53
SMAD4-216ENST00000593223 MAGEH1Q9H213 219 aa5.49□□□□□ -1.53
SMAD4-216ENST00000593223 ELAC1Q9H777 363 aaKnown RBP5.49□□□□□ -1.53
SMAD4-216ENST00000593223 SLC12A4Q9UP95 1085 aa5.49□□□□□ -1.53
SMAD4-216ENST00000593223 CNTN6Q9UQ52 1028 aa5.49□□□□□ -1.53
SMAD4-216ENST00000593223 KDM5CP41229 1560 aa5.49□□□□□ -1.53
SMAD4-216ENST00000593223 ZNF518AQ6AHZ1 1483 aa5.48□□□□□ -1.53
SMAD4-216ENST00000593223 LRRC9Q6ZRR7 1453 aa5.48□□□□□ -1.53
SMAD4-216ENST00000593223 LOC105369274A0A096LPK9 316 aa5.48□□□□□ -1.53
SMAD4-216ENST00000593223 LOC102723532A0A0G2JNH3 316 aa5.48□□□□□ -1.53
SMAD4-216ENST00000593223 HMX3A6NHT5 357 aa5.48□□□□□ -1.53
SMAD4-216ENST00000593223 RRHO14718 337 aa5.48□□□□□ -1.53
SMAD4-216ENST00000593223 NPHP1O15259 732 aa5.48□□□□□ -1.53
SMAD4-216ENST00000593223 PLAUP00749 431 aa5.48□□□□□ -1.53
SMAD4-216ENST00000593223 ALDOAP04075 364 aaKnown RBP5.48□□□□□ -1.53
SMAD4-216ENST00000593223 ENO1P06733 434 aaKnown RBP5.48□□□□□ -1.53
SMAD4-216ENST00000593223 CD63P08962 238 aa5.48□□□□□ -1.53
SMAD4-216ENST00000593223 ATP5F1P24539 256 aaPredicted RBP5.48□□□□□ -1.53
SMAD4-216ENST00000593223 KRT72Q14CN4 511 aa5.48□□□□□ -1.53
SMAD4-216ENST00000593223 TIGD6Q17RP2 521 aa5.48□□□□□ -1.53
SMAD4-216ENST00000593223 GRAMD1BQ3KR37 738 aa5.48□□□□□ -1.53
SMAD4-216ENST00000593223 ANXA2RQ3ZCQ2 193 aa5.48□□□□□ -1.53
SMAD4-216ENST00000593223 FAM83BQ5T0W9 1011 aa5.48□□□□□ -1.53
SMAD4-216ENST00000593223 NFRKBQ6P4R8 1299 aa5.48□□□□□ -1.53
SMAD4-216ENST00000593223 TFAP2DQ7Z6R9 452 aa5.48□□□□□ -1.53
SMAD4-216ENST00000593223 SLC44A2Q8IWA5 706 aaPredicted RBP5.48□□□□□ -1.53
SMAD4-216ENST00000593223 LAS2Q8IYD9 372 aa5.48□□□□□ -1.53
SMAD4-216ENST00000593223 OR4N4Q8N0Y3 316 aa5.48□□□□□ -1.53
SMAD4-216ENST00000593223 CCT6BQ92526 530 aa5.48□□□□□ -1.53
SMAD4-216ENST00000593223 KAT2BQ92831 832 aa5.48□□□□□ -1.53
SMAD4-216ENST00000593223 C3orf49Q96BT1 292 aa5.48□□□□□ -1.53
SMAD4-216ENST00000593223 ZNF845Q96IR2 970 aaPredicted RBP5.48□□□□□ -1.53
SMAD4-216ENST00000593223 GPR78Q96P69 363 aa5.48□□□□□ -1.53
SMAD4-216ENST00000593223 ABHD14AQ9BUJ0 271 aa5.48□□□□□ -1.53
SMAD4-216ENST00000593223 TM2D2Q9BX73 214 aa5.48□□□□□ -1.53
SMAD4-216ENST00000593223 SLC29A3Q9BZD2 475 aa5.48□□□□□ -1.53
SMAD4-216ENST00000593223 PRSS22Q9GZN4 317 aa5.48□□□□□ -1.53
SMAD4-216ENST00000593223 PTPRHQ9HD43 1115 aa5.48□□□□□ -1.53
SMAD4-216ENST00000593223 LIN7CQ9NUP9 197 aaKnown RBP5.48□□□□□ -1.53
SMAD4-216ENST00000593223 GRHPRQ9UBQ7 328 aa5.48□□□□□ -1.53
SMAD4-216ENST00000593223 B3GNT3Q9Y2A9 372 aa5.48□□□□□ -1.53
SMAD4-216ENST00000593223 ZBTB1Q9Y2K1 713 aa5.48□□□□□ -1.53
SMAD4-216ENST00000593223 MAP3K1Q13233 1512 aa5.48□□□□□ -1.53
SMAD4-216ENST00000593223 KIF27Q86VH2 1401 aa5.48□□□□□ -1.53
SMAD4-216ENST00000593223 ITSN2Q9NZM3 1697 aa5.47□□□□□ -1.53
SMAD4-216ENST00000593223 CYP2D7A0A087X1C5 515 aa5.47□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms