RNA–Protein interactions for RNA: ENST00000587259.5

VMP1-204, Transcript of vacuole membrane protein 1, humanhuman

TSL 4

Gene VMP1, Length 606 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-204ENST00000587259 SCARA5Q6ZMJ2 495 aa8.15□□□□□ -1.1
VMP1-204ENST00000587259 NUDT18Q6ZVK8 323 aa8.15□□□□□ -1.1
VMP1-204ENST00000587259 RSRC2Q7L4I2 434 aaKnown RBP8.15□□□□□ -1.1
VMP1-204ENST00000587259 ETFBKMTQ8IXQ9 262 aa8.15□□□□□ -1.1
VMP1-204ENST00000587259 ZNF513Q8N8E2 541 aaPredicted RBP8.15□□□□□ -1.1
VMP1-204ENST00000587259 LRRC57Q8N9N7 239 aa8.15□□□□□ -1.1
VMP1-204ENST00000587259 SLC35G2Q8TBE7 412 aa8.15□□□□□ -1.1
VMP1-204ENST00000587259 MYCBPAPQ8TBZ2 947 aa8.15□□□□□ -1.1
VMP1-204ENST00000587259 KAT5Q92993 513 aa8.15□□□□□ -1.1
VMP1-204ENST00000587259 ZNF653Q96CK0 615 aa8.15□□□□□ -1.1
VMP1-204ENST00000587259 SPACA7Q96KW9 195 aa8.15□□□□□ -1.1
VMP1-204ENST00000587259 HSPA12BQ96MM6 686 aa8.15□□□□□ -1.1
VMP1-204ENST00000587259 PACSIN1Q9BY11 444 aa8.15□□□□□ -1.1
VMP1-204ENST00000587259 CARD9Q9H257 536 aa8.15□□□□□ -1.1
VMP1-204ENST00000587259 SNX25Q9H3E2 840 aa8.15□□□□□ -1.1
VMP1-204ENST00000587259 SLC32A1Q9H598 525 aa8.15□□□□□ -1.1
VMP1-204ENST00000587259 SMYD3Q9H7B4 428 aa8.15□□□□□ -1.1
VMP1-204ENST00000587259 POLMQ9NP87 494 aaPredicted RBP8.15□□□□□ -1.1
VMP1-204ENST00000587259 UTP3Q9NQZ2 479 aaKnown RBP eCLIP8.15□□□□□ -1.1
VMP1-204ENST00000587259 CISHQ9NSE2 258 aa8.15□□□□□ -1.1
VMP1-204ENST00000587259 GMIPQ9P107 970 aa8.15□□□□□ -1.1
VMP1-204ENST00000587259 CTTNBP2NLQ9P2B4 639 aa8.15□□□□□ -1.1
VMP1-204ENST00000587259 NXF1Q9UBU9 619 aaKnown RBP8.15□□□□□ -1.1
VMP1-204ENST00000587259 PCDHGC3Q9UN70 934 aa8.15□□□□□ -1.1
VMP1-204ENST00000587259 MSRB2Q9Y3D2 182 aa8.15□□□□□ -1.1
VMP1-204ENST00000587259 NEUROG3Q9Y4Z2 214 aa8.15□□□□□ -1.1
VMP1-204ENST00000587259 CELSR3Q9NYQ7 3312 aa8.15□□□□□ -1.1
VMP1-204ENST00000587259 PI4KAP42356 2102 aa8.15□□□□□ -1.11
VMP1-204ENST00000587259 MYO18AQ92614 2054 aaKnown RBP8.15□□□□□ -1.11
VMP1-204ENST00000587259 LAMA5O15230 3695 aa8.14□□□□□ -1.11
VMP1-204ENST00000587259 PCDH15Q96QU1 1955 aa8.14□□□□□ -1.11
VMP1-204ENST00000587259 LOC400499M0QZD8 3231 aa8.14□□□□□ -1.11
VMP1-204ENST00000587259 GOLGA6L10A0A0M3HER8 536 aa8.14□□□□□ -1.11
VMP1-204ENST00000587259 A0A1W2PQF6 199 aa8.14□□□□□ -1.11
VMP1-204ENST00000587259 CCDC66A2RUB6 948 aa8.14□□□□□ -1.11
VMP1-204ENST00000587259 CCDC151A5D8V7 595 aa8.14□□□□□ -1.11
VMP1-204ENST00000587259 A8MXQ7 604 aa8.14□□□□□ -1.11
VMP1-204ENST00000587259 TMCO5BA8MYB1 307 aa8.14□□□□□ -1.11
VMP1-204ENST00000587259 PRRT4C9JH25 899 aa8.14□□□□□ -1.11
VMP1-204ENST00000587259 NEDD8-MDP1E9PL57 170 aa8.14□□□□□ -1.11
VMP1-204ENST00000587259 CCDC188H7C350 402 aa8.14□□□□□ -1.11
VMP1-204ENST00000587259 TRIM66O15016 1216 aa8.14□□□□□ -1.11
VMP1-204ENST00000587259 MDM4O15151 490 aa8.14□□□□□ -1.11
VMP1-204ENST00000587259 BEST1O76090 585 aa8.14□□□□□ -1.11
VMP1-204ENST00000587259 ADH1CP00326 375 aa8.14□□□□□ -1.11
VMP1-204ENST00000587259 CAPNS1P04632 268 aa8.14□□□□□ -1.11
VMP1-204ENST00000587259 CYP1A1P04798 512 aaPredicted RBP8.14□□□□□ -1.11
VMP1-204ENST00000587259 CYP1A2P05177 515 aa8.14□□□□□ -1.11
VMP1-204ENST00000587259 MMEP08473 750 aa8.14□□□□□ -1.11
VMP1-204ENST00000587259 UNGP13051 313 aaPredicted RBP8.14□□□□□ -1.11
VMP1-204ENST00000587259 HOXB2P14652 356 aa8.14□□□□□ -1.11
VMP1-204ENST00000587259 CHRNB2P17787 502 aa8.14□□□□□ -1.11
VMP1-204ENST00000587259 ABCB4P21439 1286 aa8.14□□□□□ -1.11
VMP1-204ENST00000587259 YWHAQP27348 245 aa8.14□□□□□ -1.11
VMP1-204ENST00000587259 SLC1A1P43005 524 aa8.14□□□□□ -1.11
VMP1-204ENST00000587259 ASPAP45381 313 aa8.14□□□□□ -1.11
VMP1-204ENST00000587259 ATXN3P54252 364 aaPredicted RBP8.14□□□□□ -1.11
VMP1-204ENST00000587259 KCNC4Q03721 635 aa8.14□□□□□ -1.11
VMP1-204ENST00000587259 SCAPQ12770 1279 aa8.14□□□□□ -1.11
VMP1-204ENST00000587259 BRD3Q15059 726 aa8.14□□□□□ -1.11
VMP1-204ENST00000587259 ERCC6LQ2NKX8 1250 aa8.14□□□□□ -1.11
VMP1-204ENST00000587259 WDR72Q3MJ13 1102 aa8.14□□□□□ -1.11
VMP1-204ENST00000587259 TPGS1Q6ZTW0 290 aa8.14□□□□□ -1.11
VMP1-204ENST00000587259 PAQR9Q6ZVX9 377 aa8.14□□□□□ -1.11
VMP1-204ENST00000587259 C11orf74Q86VG3 221 aa8.14□□□□□ -1.11
VMP1-204ENST00000587259 CACUL1Q86Y37 369 aa8.14□□□□□ -1.11
VMP1-204ENST00000587259 PHF13Q86YI8 300 aaPredicted RBP8.14□□□□□ -1.11
VMP1-204ENST00000587259 HDDC3Q8N4P3 179 aa8.14□□□□□ -1.11
VMP1-204ENST00000587259 UBR7Q8N806 425 aa8.14□□□□□ -1.11
VMP1-204ENST00000587259 TMEM35BQ8NCS4 154 aa8.14□□□□□ -1.11
VMP1-204ENST00000587259 ZNF564Q8TBZ8 553 aaPredicted RBP8.14□□□□□ -1.11
VMP1-204ENST00000587259 MDM1Q8TC05 714 aa8.14□□□□□ -1.11
VMP1-204ENST00000587259 ACTRT1Q8TDG2 376 aa8.14□□□□□ -1.11
VMP1-204ENST00000587259 KCNV2Q8TDN2 545 aa8.14□□□□□ -1.11
VMP1-204ENST00000587259 SLC20A1Q8WUM9 679 aa8.14□□□□□ -1.11
VMP1-204ENST00000587259 FBXO32Q969P5 355 aa8.14□□□□□ -1.11
VMP1-204ENST00000587259 C8orf48Q96LL4 319 aa8.14□□□□□ -1.11
VMP1-204ENST00000587259 MED10Q9BTT4 135 aa8.14□□□□□ -1.11
VMP1-204ENST00000587259 TLR10Q9BXR5 811 aa8.14□□□□□ -1.11
VMP1-204ENST00000587259 THAP2Q9H0W7 228 aa8.14□□□□□ -1.11
VMP1-204ENST00000587259 SDCBP2Q9H190 292 aa8.14□□□□□ -1.11
VMP1-204ENST00000587259 XYLT2Q9H1B5 865 aa8.14□□□□□ -1.11
VMP1-204ENST00000587259 IL21RQ9HBE5 538 aa8.14□□□□□ -1.11
VMP1-204ENST00000587259 APOBEC3GQ9HC16 384 aaKnown RBP8.14□□□□□ -1.11
VMP1-204ENST00000587259 CAPN10Q9HC96 672 aa8.14□□□□□ -1.11
VMP1-204ENST00000587259 CD248Q9HCU0 757 aa8.14□□□□□ -1.11
VMP1-204ENST00000587259 NPDC1Q9NQX5 325 aaPredicted RBP8.14□□□□□ -1.11
VMP1-204ENST00000587259 CACNA2D2Q9NY47 1150 aa8.14□□□□□ -1.11
VMP1-204ENST00000587259 PLK2Q9NYY3 685 aa8.14□□□□□ -1.11
VMP1-204ENST00000587259 SALL4Q9UJQ4 1053 aa8.14□□□□□ -1.11
VMP1-204ENST00000587259 NUDT5Q9UKK9 219 aa8.14□□□□□ -1.11
VMP1-204ENST00000587259 SLC6A14Q9UN76 642 aa8.14□□□□□ -1.11
VMP1-204ENST00000587259 TFR2Q9UP52 801 aa8.14□□□□□ -1.11
VMP1-204ENST00000587259 SBDSQ9Y3A5 250 aaKnown RBP eCLIP8.14□□□□□ -1.11
VMP1-204ENST00000587259 A0A0A0MRY4 1105 aa8.13□□□□□ -1.11
VMP1-204ENST00000587259 TMEM8BA6NDV4 472 aa8.13□□□□□ -1.11
VMP1-204ENST00000587259 PGRMC1O00264 195 aaKnown RBP8.13□□□□□ -1.11
VMP1-204ENST00000587259 OPHN1O60890 802 aa8.13□□□□□ -1.11
VMP1-204ENST00000587259 SERPINF2P08697 491 aa8.13□□□□□ -1.11
VMP1-204ENST00000587259 FAM163BP0C2L3 166 aa8.13□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms