RNA–Protein interactions for RNA: ENST00000580751.5

SS18-216, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 547 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-216ENST00000580751 GRIA2P42262 883 aa15.98■□□□□ 0.15
SS18-216ENST00000580751 SSR1P43307 286 aaKnown RBP15.98■□□□□ 0.15
SS18-216ENST00000580751 SLC6A11P48066 632 aa15.98■□□□□ 0.15
SS18-216ENST00000580751 ZNF135P52742 658 aaPredicted RBP15.98■□□□□ 0.15
SS18-216ENST00000580751 SLC25A11Q02978 314 aaKnown RBP15.98■□□□□ 0.15
SS18-216ENST00000580751 KDSRQ06136 332 aa15.98■□□□□ 0.15
SS18-216ENST00000580751 DGKKQ5KSL6 1271 aa15.98■□□□□ 0.15
SS18-216ENST00000580751 MANEALQ5VSG8 457 aa15.98■□□□□ 0.15
SS18-216ENST00000580751 DAB2IPQ5VWQ8 1189 aa15.98■□□□□ 0.15
SS18-216ENST00000580751 NAIF1Q69YI7 327 aaPredicted RBP15.98■□□□□ 0.15
SS18-216ENST00000580751 CHST9Q7L1S5 443 aa15.98■□□□□ 0.15
SS18-216ENST00000580751 C14orf80Q86SX3 495 aa15.98■□□□□ 0.15
SS18-216ENST00000580751 ZNF683Q8IZ20 524 aa15.98■□□□□ 0.15
SS18-216ENST00000580751 CFAP52Q8N1V2 620 aa15.98■□□□□ 0.15
SS18-216ENST00000580751 TERB1Q8NA31 727 aa15.98■□□□□ 0.15
SS18-216ENST00000580751 PJA1Q8NG27 643 aa15.98■□□□□ 0.15
SS18-216ENST00000580751 CCDC26Q8TAB7 109 aa15.98■□□□□ 0.15
SS18-216ENST00000580751 TEKT4Q8WW24 435 aa15.98■□□□□ 0.15
SS18-216ENST00000580751 IGSF8Q969P0 613 aa15.98■□□□□ 0.15
SS18-216ENST00000580751 PBXIP1Q96AQ6 731 aa15.98■□□□□ 0.15
SS18-216ENST00000580751 SNRNP25Q9BV90 132 aaKnown RBP15.98■□□□□ 0.15
SS18-216ENST00000580751 C1QTNF1Q9BXJ1 281 aa15.98■□□□□ 0.15
SS18-216ENST00000580751 FOXQ1Q9C009 403 aa15.98■□□□□ 0.15
SS18-216ENST00000580751 ZYG11BQ9C0D3 744 aa15.98■□□□□ 0.15
SS18-216ENST00000580751 L2HGDHQ9H9P8 463 aa15.98■□□□□ 0.15
SS18-216ENST00000580751 DDX56Q9NY93 547 aaKnown RBP15.98■□□□□ 0.15
SS18-216ENST00000580751 PPARGC1AQ9UBK2 798 aaKnown RBP15.98■□□□□ 0.15
SS18-216ENST00000580751 CDC23Q9UJX2 597 aa15.98■□□□□ 0.15
SS18-216ENST00000580751 SNX10Q9Y5X0 201 aa15.98■□□□□ 0.15
SS18-216ENST00000580751 FAM170BA6NMN3 283 aa15.97■□□□□ 0.15
SS18-216ENST00000580751 DRGXA6NNA5 263 aa15.97■□□□□ 0.15
SS18-216ENST00000580751 DLL1O00548 723 aa15.97■□□□□ 0.15
SS18-216ENST00000580751 ENC1O14682 589 aa15.97■□□□□ 0.15
SS18-216ENST00000580751 SRGAP2O75044 1071 aa15.97■□□□□ 0.15
SS18-216ENST00000580751 URI1O94763 535 aaPredicted RBP15.97■□□□□ 0.15
SS18-216ENST00000580751 LRIG2O94898 1065 aa15.97■□□□□ 0.15
SS18-216ENST00000580751 PDGFBP01127 241 aaPredicted RBP15.97■□□□□ 0.15
SS18-216ENST00000580751 PEX5P50542 639 aa15.97■□□□□ 0.15
SS18-216ENST00000580751 CDH4P55283 916 aa15.97■□□□□ 0.15
SS18-216ENST00000580751 OXCT1P55809 520 aa15.97■□□□□ 0.15
SS18-216ENST00000580751 RWDD2BP57060 319 aa15.97■□□□□ 0.15
SS18-216ENST00000580751 WHAMMP3Q1A5X7 153 aa15.97■□□□□ 0.15
SS18-216ENST00000580751 FBXO43Q4G163 708 aa15.97■□□□□ 0.15
SS18-216ENST00000580751 CWF19L1Q69YN2 538 aaKnown RBP15.97■□□□□ 0.15
SS18-216ENST00000580751 FSTL4Q6MZW2 842 aa15.97■□□□□ 0.15
SS18-216ENST00000580751 CYP4V2Q6ZWL3 525 aaPredicted RBP15.97■□□□□ 0.15
SS18-216ENST00000580751 ANKS1BQ7Z6G8 1248 aa15.97■□□□□ 0.15
SS18-216ENST00000580751 PHTF2Q8N3S3 785 aa15.97■□□□□ 0.15
SS18-216ENST00000580751 CARNMT1Q8N4J0 409 aa15.97■□□□□ 0.15
SS18-216ENST00000580751 FIBINQ8TAL6 211 aa15.97■□□□□ 0.15
SS18-216ENST00000580751 TBC1D31Q96DN5 1066 aa15.97■□□□□ 0.15
SS18-216ENST00000580751 DHX35Q9H5Z1 703 aaKnown RBP15.97■□□□□ 0.15
SS18-216ENST00000580751 RETREG1Q9H6L5 497 aa15.97■□□□□ 0.15
SS18-216ENST00000580751 TTC7AQ9ULT0 858 aaPredicted RBP15.97■□□□□ 0.15
SS18-216ENST00000580751 SIT1Q9Y3P8 196 aa15.97■□□□□ 0.15
SS18-216ENST00000580751 MIA3Q5JRA6 1907 aa15.97■□□□□ 0.15
SS18-216ENST00000580751 A0A0A0MRY4 1105 aa15.96■□□□□ 0.15
SS18-216ENST00000580751 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP15.96■□□□□ 0.15
SS18-216ENST00000580751 TBC1D3BA6NDS4 549 aa15.96■□□□□ 0.15
SS18-216ENST00000580751 H0Y626 953 aa15.96■□□□□ 0.15
SS18-216ENST00000580751 DDX3YO15523 660 aaKnown RBP15.96■□□□□ 0.15
SS18-216ENST00000580751 CISD3P0C7P0 127 aa15.96■□□□□ 0.15
SS18-216ENST00000580751 TCF4P15884 667 aa15.96■□□□□ 0.15
SS18-216ENST00000580751 AOC1P19801 751 aa15.96■□□□□ 0.15
SS18-216ENST00000580751 IL1R2P27930 398 aa15.96■□□□□ 0.15
SS18-216ENST00000580751 CETN2P41208 172 aa15.96■□□□□ 0.15
SS18-216ENST00000580751 MAGEA9P43362 315 aa15.96■□□□□ 0.15
SS18-216ENST00000580751 CLCN5P51795 746 aa15.96■□□□□ 0.15
SS18-216ENST00000580751 SEMA3BQ13214 749 aa15.96■□□□□ 0.15
SS18-216ENST00000580751 ZNF177Q13360 481 aaPredicted RBP15.96■□□□□ 0.15
SS18-216ENST00000580751 CCINQ13939 588 aa15.96■□□□□ 0.15
SS18-216ENST00000580751 DPYSL2Q16555 572 aa15.96■□□□□ 0.15
SS18-216ENST00000580751 SMTNL2Q2TAL5 461 aa15.96■□□□□ 0.15
SS18-216ENST00000580751 ASTLQ6HA08 431 aaPredicted RBP15.96■□□□□ 0.15
SS18-216ENST00000580751 RWDD4Q6NW29 188 aaKnown RBP15.96■□□□□ 0.15
SS18-216ENST00000580751 CIR1Q86X95 450 aaPredicted RBP15.96■□□□□ 0.15
SS18-216ENST00000580751 VSIG1Q86XK7 387 aa15.96■□□□□ 0.15
SS18-216ENST00000580751 CCDC105Q8IYK2 499 aa15.96■□□□□ 0.15
SS18-216ENST00000580751 KATNAL2Q8IYT4 538 aa15.96■□□□□ 0.15
SS18-216ENST00000580751 ZNF687Q8N1G0 1237 aa15.96■□□□□ 0.15
SS18-216ENST00000580751 SYNPOQ8N3V7 929 aa15.96■□□□□ 0.15
SS18-216ENST00000580751 FBXL6Q8N531 539 aa15.96■□□□□ 0.15
SS18-216ENST00000580751 DDX51Q8N8A6 666 aaKnown RBP eCLIP15.96■□□□□ 0.15
SS18-216ENST00000580751 WFIKKN2Q8TEU8 576 aa15.96■□□□□ 0.15
SS18-216ENST00000580751 OSBPL9Q96SU4 736 aa15.96■□□□□ 0.15
SS18-216ENST00000580751 ZWILCHQ9H900 591 aa15.96■□□□□ 0.15
SS18-216ENST00000580751 FBRSL1Q9HCM7 1045 aaKnown RBP15.96■□□□□ 0.15
SS18-216ENST00000580751 STAU2Q9NUL3 570 aaKnown RBP eCLIP15.96■□□□□ 0.15
SS18-216ENST00000580751 GPATCH2LQ9NWQ4 482 aa15.96■□□□□ 0.15
SS18-216ENST00000580751 CLEC4EQ9ULY5 219 aa15.96■□□□□ 0.15
SS18-216ENST00000580751 PRR33A8MZF0 331 aa15.95■□□□□ 0.14
SS18-216ENST00000580751 FAM72CH0Y354 149 aa15.95■□□□□ 0.14
SS18-216ENST00000580751 FGF10O15520 208 aaPredicted RBP15.95■□□□□ 0.14
SS18-216ENST00000580751 CREB3O43889 395 aa15.95■□□□□ 0.14
SS18-216ENST00000580751 GPR37L1O60883 481 aa15.95■□□□□ 0.14
SS18-216ENST00000580751 EGFP01133 1207 aa15.95■□□□□ 0.14
SS18-216ENST00000580751 RARAP10276 462 aa15.95■□□□□ 0.14
SS18-216ENST00000580751 CHRNB1P11230 501 aa15.95■□□□□ 0.14
SS18-216ENST00000580751 PABPC1P11940 636 aaKnown RBP15.95■□□□□ 0.14
SS18-216ENST00000580751 RHOQP17081 205 aa15.95■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms