RNA–Protein interactions for RNA: ENST00000572334.6

VPS53-213, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 561 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-213ENST00000572334 PTPRN2Q92932 1015 aa6.97□□□□□ -1.29
VPS53-213ENST00000572334 SMARCE1Q969G3 411 aa6.97□□□□□ -1.29
VPS53-213ENST00000572334 DHTKD1Q96HY7 919 aaPredicted RBP6.97□□□□□ -1.29
VPS53-213ENST00000572334 PRMT1Q99873 361 aaKnown RBP6.97□□□□□ -1.29
VPS53-213ENST00000572334 MIS12Q9H081 205 aa6.97□□□□□ -1.29
VPS53-213ENST00000572334 PABPC3Q9H361 631 aaKnown RBP6.97□□□□□ -1.29
VPS53-213ENST00000572334 FBRSQ9HAH7 460 aa6.97□□□□□ -1.29
VPS53-213ENST00000572334 STIM2Q9P246 746 aa6.97□□□□□ -1.29
VPS53-213ENST00000572334 SLCO3A1Q9UIG8 710 aa6.97□□□□□ -1.29
VPS53-213ENST00000572334 PLA2G4CQ9UP65 541 aa6.97□□□□□ -1.29
VPS53-213ENST00000572334 TLR6Q9Y2C9 796 aa6.97□□□□□ -1.29
VPS53-213ENST00000572334 ANKRD6Q9Y2G4 727 aa6.97□□□□□ -1.29
VPS53-213ENST00000572334 GPSM3Q9Y4H4 160 aa6.97□□□□□ -1.29
VPS53-213ENST00000572334 ITIH6Q6UXX5 1313 aa6.97□□□□□ -1.29
VPS53-213ENST00000572334 RP1P56715 2156 aa6.96□□□□□ -1.29
VPS53-213ENST00000572334 A0A1W2PR77 199 aa6.96□□□□□ -1.3
VPS53-213ENST00000572334 BECN2A8MW95 431 aa6.96□□□□□ -1.3
VPS53-213ENST00000572334 TTC34A8MYJ7 566 aa6.96□□□□□ -1.3
VPS53-213ENST00000572334 KCNU1A8MYU2 1149 aa6.96□□□□□ -1.3
VPS53-213ENST00000572334 MID1O15344 667 aa6.96□□□□□ -1.3
VPS53-213ENST00000572334 IRAK2O43187 625 aa6.96□□□□□ -1.3
VPS53-213ENST00000572334 PCDHGA12O60330 932 aa6.96□□□□□ -1.3
VPS53-213ENST00000572334 GADD45BO75293 160 aaPredicted RBP6.96□□□□□ -1.3
VPS53-213ENST00000572334 FBXO21O94952 628 aa6.96□□□□□ -1.3
VPS53-213ENST00000572334 SMC2O95347 1197 aa6.96□□□□□ -1.3
VPS53-213ENST00000572334 VAV1P15498 845 aa6.96□□□□□ -1.3
VPS53-213ENST00000572334 POLR2EP19388 210 aaKnown RBP6.96□□□□□ -1.3
VPS53-213ENST00000572334 CD27P26842 260 aa6.96□□□□□ -1.3
VPS53-213ENST00000572334 SLC11A2P49281 568 aa6.96□□□□□ -1.3
VPS53-213ENST00000572334 AFF3P51826 1226 aaKnown RBP6.96□□□□□ -1.3
VPS53-213ENST00000572334 METAP1P53582 386 aa6.96□□□□□ -1.3
VPS53-213ENST00000572334 GALCP54803 685 aa6.96□□□□□ -1.3
VPS53-213ENST00000572334 STX17P56962 302 aa6.96□□□□□ -1.3
VPS53-213ENST00000572334 APBA1Q02410 837 aa6.96□□□□□ -1.3
VPS53-213ENST00000572334 KCNH2Q12809 1159 aa6.96□□□□□ -1.3
VPS53-213ENST00000572334 E2F5Q15329 346 aa6.96□□□□□ -1.3
VPS53-213ENST00000572334 STILQ15468 1287 aa6.96□□□□□ -1.3
VPS53-213ENST00000572334 KIF26BQ2KJY2 2108 aa6.96□□□□□ -1.3
VPS53-213ENST00000572334 HNRNPA1L2Q32P51 320 aaKnown RBP6.96□□□□□ -1.3
VPS53-213ENST00000572334 ZC3H12AQ5D1E8 599 aaKnown RBP6.96□□□□□ -1.3
VPS53-213ENST00000572334 PITRM1Q5JRX3 1037 aa6.96□□□□□ -1.3
VPS53-213ENST00000572334 ARTNQ5T4W7 220 aa6.96□□□□□ -1.3
VPS53-213ENST00000572334 ZNF776Q68DI1 518 aaPredicted RBP6.96□□□□□ -1.3
VPS53-213ENST00000572334 KIAA0895LQ68EN5 471 aa6.96□□□□□ -1.3
VPS53-213ENST00000572334 GJB7Q6PEY0 223 aa6.96□□□□□ -1.3
VPS53-213ENST00000572334 IL27RAQ6UWB1 636 aa6.96□□□□□ -1.3
VPS53-213ENST00000572334 USP30Q70CQ3 517 aa6.96□□□□□ -1.3
VPS53-213ENST00000572334 BEND5Q7L4P6 421 aa6.96□□□□□ -1.3
VPS53-213ENST00000572334 TMEM110Q86TL2 294 aa6.96□□□□□ -1.3
VPS53-213ENST00000572334 MFN1Q8IWA4 741 aa6.96□□□□□ -1.3
VPS53-213ENST00000572334 UNC45BQ8IWX7 931 aa6.96□□□□□ -1.3
VPS53-213ENST00000572334 DHX40Q8IX18 779 aaKnown RBP6.96□□□□□ -1.3
VPS53-213ENST00000572334 AADATQ8N5Z0 425 aa6.96□□□□□ -1.3
VPS53-213ENST00000572334 HJURPQ8NCD3 748 aaPredicted RBP6.96□□□□□ -1.3
VPS53-213ENST00000572334 OR52K2Q8NGK3 314 aa6.96□□□□□ -1.3
VPS53-213ENST00000572334 MDM1Q8TC05 714 aa6.96□□□□□ -1.3
VPS53-213ENST00000572334 SETD7Q8WTS6 366 aaKnown RBP6.96□□□□□ -1.3
VPS53-213ENST00000572334 NELFBQ8WX92 580 aa6.96□□□□□ -1.3
VPS53-213ENST00000572334 SNX19Q92543 992 aa6.96□□□□□ -1.3
VPS53-213ENST00000572334 FAM131CQ96AQ9 280 aa6.96□□□□□ -1.3
VPS53-213ENST00000572334 ALG14Q96F25 216 aa6.96□□□□□ -1.3
VPS53-213ENST00000572334 SLC6A18Q96N87 628 aa6.96□□□□□ -1.3
VPS53-213ENST00000572334 BTBD1Q9H0C5 482 aa6.96□□□□□ -1.3
VPS53-213ENST00000572334 TSPYL1Q9H0U9 437 aa6.96□□□□□ -1.3
VPS53-213ENST00000572334 NEUROG2Q9H2A3 272 aa6.96□□□□□ -1.3
VPS53-213ENST00000572334 SGK2Q9HBY8 427 aa6.96□□□□□ -1.3
VPS53-213ENST00000572334 SUN2Q9UH99 717 aa6.96□□□□□ -1.3
VPS53-213ENST00000572334 ADAMTS1Q9UHI8 967 aa6.96□□□□□ -1.3
VPS53-213ENST00000572334 AJAP1Q9UKB5 411 aaPredicted RBP6.96□□□□□ -1.3
VPS53-213ENST00000572334 CTNND2Q9UQB3 1225 aa6.96□□□□□ -1.3
VPS53-213ENST00000572334 ERVW-1Q9UQF0 538 aa6.96□□□□□ -1.3
VPS53-213ENST00000572334 PCDHB9Q9Y5E1 797 aa6.96□□□□□ -1.3
VPS53-213ENST00000572334 LRRK1Q38SD2 2015 aa6.96□□□□□ -1.3
VPS53-213ENST00000572334 A0A1B0GTQ1 180 aa6.95□□□□□ -1.3
VPS53-213ENST00000572334 A0A1W2PP55 124 aa6.95□□□□□ -1.3
VPS53-213ENST00000572334 A0A1W2PPC4 97 aa6.95□□□□□ -1.3
VPS53-213ENST00000572334 E5RJQ4 531 aa6.95□□□□□ -1.3
VPS53-213ENST00000572334 I6L893 689 aaPredicted RBP6.95□□□□□ -1.3
VPS53-213ENST00000572334 PSMA7O14818 248 aa6.95□□□□□ -1.3
VPS53-213ENST00000572334 VILLO15195 856 aa6.95□□□□□ -1.3
VPS53-213ENST00000572334 FLRT2O43155 660 aa6.95□□□□□ -1.3
VPS53-213ENST00000572334 FSBPO95073 299 aa6.95□□□□□ -1.3
VPS53-213ENST00000572334 LUC7L3O95232 432 aaKnown RBP6.95□□□□□ -1.3
VPS53-213ENST00000572334 TRUB2O95900 331 aaKnown RBP6.95□□□□□ -1.3
VPS53-213ENST00000572334 DNTTP04053 509 aa6.95□□□□□ -1.3
VPS53-213ENST00000572334 ATP5BP06576 529 aaKnown RBP6.95□□□□□ -1.3
VPS53-213ENST00000572334 TACR2P21452 398 aa6.95□□□□□ -1.3
VPS53-213ENST00000572334 MZF1P28698 734 aaPredicted RBP6.95□□□□□ -1.3
VPS53-213ENST00000572334 DRD3P35462 400 aa6.95□□□□□ -1.3
VPS53-213ENST00000572334 NUMBP49757 651 aa6.95□□□□□ -1.3
VPS53-213ENST00000572334 STK19P49842 368 aaPredicted RBP6.95□□□□□ -1.3
VPS53-213ENST00000572334 IRAK1P51617 712 aa6.95□□□□□ -1.3
VPS53-213ENST00000572334 IL9RQ01113 521 aa6.95□□□□□ -1.3
VPS53-213ENST00000572334 ARID5AQ03989 594 aa6.95□□□□□ -1.3
VPS53-213ENST00000572334 COL9A2Q14055 689 aaPredicted RBP6.95□□□□□ -1.3
VPS53-213ENST00000572334 CST6Q15828 149 aa6.95□□□□□ -1.3
VPS53-213ENST00000572334 MEA1Q16626 185 aa6.95□□□□□ -1.3
VPS53-213ENST00000572334 CCDC40Q4G0X9 1142 aa6.95□□□□□ -1.3
VPS53-213ENST00000572334 PRAMEF14Q5SWL7 426 aa6.95□□□□□ -1.3
VPS53-213ENST00000572334 OTUD1Q5VV17 481 aaPredicted RBP6.95□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms