RNA–Protein interactions for RNA: ENST00000571805.5

VPS53-211, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,356 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-211ENST00000571805 EIF4E1BA6NMX2 242 aaKnown RBP23.35■■□□□ 1.33
VPS53-211ENST00000571805 ERCC2P18074 760 aa23.35■■□□□ 1.33
VPS53-211ENST00000571805 PTPN3P26045 913 aa23.35■■□□□ 1.33
VPS53-211ENST00000571805 TYK2P29597 1187 aa23.35■■□□□ 1.33
VPS53-211ENST00000571805 MAGEA12P43365 314 aa23.35■■□□□ 1.33
VPS53-211ENST00000571805 SEMA3BQ13214 749 aa23.35■■□□□ 1.33
VPS53-211ENST00000571805 GRTP1Q5TC63 336 aa23.35■■□□□ 1.33
VPS53-211ENST00000571805 WSCD1Q658N2 575 aa23.35■■□□□ 1.33
VPS53-211ENST00000571805 LMNTD2Q8IXW0 634 aa23.35■■□□□ 1.33
VPS53-211ENST00000571805 SIX6OS1Q8N1H7 587 aa23.35■■□□□ 1.33
VPS53-211ENST00000571805 BRI3BPQ8WY22 251 aa23.35■■□□□ 1.33
VPS53-211ENST00000571805 ISL2Q96A47 359 aa23.35■■□□□ 1.33
VPS53-211ENST00000571805 PANX3Q96QZ0 392 aa23.35■■□□□ 1.33
VPS53-211ENST00000571805 SLC9A7Q96T83 725 aa23.35■■□□□ 1.33
VPS53-211ENST00000571805 THTPAQ9BU02 230 aa23.35■■□□□ 1.33
VPS53-211ENST00000571805 COPG2Q9UBF2 871 aa23.35■■□□□ 1.33
VPS53-211ENST00000571805 ZNF212Q9UDV6 495 aa23.35■■□□□ 1.33
VPS53-211ENST00000571805 ZNF236Q9UL36 1845 aa23.34■■□□□ 1.33
VPS53-211ENST00000571805 CCL15-CCL14A0A0B4J2E2 113 aa23.34■■□□□ 1.33
VPS53-211ENST00000571805 GABRDO14764 452 aa23.34■■□□□ 1.33
VPS53-211ENST00000571805 AMHP03971 560 aa23.34■■□□□ 1.33
VPS53-211ENST00000571805 GRK2P25098 689 aa23.34■■□□□ 1.33
VPS53-211ENST00000571805 LRPAP1P30533 357 aa23.34■■□□□ 1.33
VPS53-211ENST00000571805 TKTL1P51854 596 aa23.34■■□□□ 1.33
VPS53-211ENST00000571805 CCL15Q16663 113 aa23.34■■□□□ 1.33
VPS53-211ENST00000571805 OR6Y1Q8NGX8 325 aa23.34■■□□□ 1.33
VPS53-211ENST00000571805 WDR6Q9NNW5 1121 aaKnown RBP23.34■■□□□ 1.33
VPS53-211ENST00000571805 PNPOQ9NVS9 261 aa23.34■■□□□ 1.33
VPS53-211ENST00000571805 SLC7A8Q9UHI5 535 aa23.34■■□□□ 1.33
VPS53-211ENST00000571805 TREHO43280 583 aa23.34■■□□□ 1.33
VPS53-211ENST00000571805 SKAP2O75563 359 aaPredicted RBP23.34■■□□□ 1.33
VPS53-211ENST00000571805 C6orf222P0C671 652 aaPredicted RBP23.34■■□□□ 1.33
VPS53-211ENST00000571805 MAP3K7CLP57077 242 aa23.34■■□□□ 1.33
VPS53-211ENST00000571805 MFSD10Q14728 455 aa23.34■■□□□ 1.33
VPS53-211ENST00000571805 PRAMEF19Q5SWL8 479 aa23.34■■□□□ 1.33
VPS53-211ENST00000571805 CAPRIN2Q6IMN6 1127 aaKnown RBP23.34■■□□□ 1.33
VPS53-211ENST00000571805 SNX15Q9NRS6 342 aa23.34■■□□□ 1.33
VPS53-211ENST00000571805 ZNF358Q9NW07 568 aa23.34■■□□□ 1.33
VPS53-211ENST00000571805 GNEQ9Y223 722 aaKnown RBP23.34■■□□□ 1.33
VPS53-211ENST00000571805 WASF2Q9Y6W5 498 aa23.34■■□□□ 1.33
VPS53-211ENST00000571805 ZNF195O14628 629 aa23.33■■□□□ 1.33
VPS53-211ENST00000571805 PTGESO14684 152 aa23.33■■□□□ 1.33
VPS53-211ENST00000571805 AP2A1O95782 977 aa23.33■■□□□ 1.33
VPS53-211ENST00000571805 RABGGTBP53611 331 aa23.33■■□□□ 1.33
VPS53-211ENST00000571805 TRMT5Q32P41 509 aaKnown RBP23.33■■□□□ 1.33
VPS53-211ENST00000571805 C9orf131Q5VYM1 1079 aa23.33■■□□□ 1.33
VPS53-211ENST00000571805 RIPOR1Q6ZS17 1223 aa23.33■■□□□ 1.33
VPS53-211ENST00000571805 PLEKHH3Q7Z736 793 aa23.33■■□□□ 1.33
VPS53-211ENST00000571805 CMC1Q7Z7K0 106 aa23.33■■□□□ 1.33
VPS53-211ENST00000571805 DCLK2Q8N568 766 aa23.33■■□□□ 1.33
VPS53-211ENST00000571805 SLC7A14Q8TBB6 771 aa23.33■■□□□ 1.33
VPS53-211ENST00000571805 NTAN1Q96AB6 310 aa23.33■■□□□ 1.33
VPS53-211ENST00000571805 LRRC40Q9H9A6 602 aa23.33■■□□□ 1.33
VPS53-211ENST00000571805 KLHL8Q9P2G9 620 aaPredicted RBP23.33■■□□□ 1.33
VPS53-211ENST00000571805 TXNDC16Q9P2K2 825 aa23.33■■□□□ 1.33
VPS53-211ENST00000571805 APOBEC2Q9Y235 224 aaKnown RBP23.33■■□□□ 1.33
VPS53-211ENST00000571805 USP12O75317 370 aa23.33■■□□□ 1.32
VPS53-211ENST00000571805 ALOX15P16050 662 aaPredicted RBP23.33■■□□□ 1.32
VPS53-211ENST00000571805 GARSP41250 739 aaKnown RBP23.33■■□□□ 1.32
VPS53-211ENST00000571805 HARS2P49590 506 aaKnown RBP23.33■■□□□ 1.32
VPS53-211ENST00000571805 IDH3AP50213 366 aa23.33■■□□□ 1.32
VPS53-211ENST00000571805 ACTR3P61158 418 aa23.33■■□□□ 1.32
VPS53-211ENST00000571805 SCAPQ12770 1279 aa23.33■■□□□ 1.32
VPS53-211ENST00000571805 TMEM135Q86UB9 458 aa23.33■■□□□ 1.32
VPS53-211ENST00000571805 ADAM32Q8TC27 787 aa23.33■■□□□ 1.32
VPS53-211ENST00000571805 SPDL1Q96EA4 605 aa23.33■■□□□ 1.32
VPS53-211ENST00000571805 AGAP3Q96P47 875 aa23.33■■□□□ 1.32
VPS53-211ENST00000571805 RBBP8Q99708 897 aa23.33■■□□□ 1.32
VPS53-211ENST00000571805 ADAM28Q9UKQ2 775 aa23.33■■□□□ 1.32
VPS53-211ENST00000571805 PDHA1P08559 390 aa23.32■■□□□ 1.32
VPS53-211ENST00000571805 RALBP11234 206 aa23.32■■□□□ 1.32
VPS53-211ENST00000571805 GTF2A2P52657 109 aa23.32■■□□□ 1.32
VPS53-211ENST00000571805 AIF1P55008 147 aa23.32■■□□□ 1.32
VPS53-211ENST00000571805 MYLK4Q86YV6 388 aaPredicted RBP23.32■■□□□ 1.32
VPS53-211ENST00000571805 MED10Q9BTT4 135 aa23.32■■□□□ 1.32
VPS53-211ENST00000571805 ULBP1Q9BZM6 244 aa23.32■■□□□ 1.32
VPS53-211ENST00000571805 CRTAC1Q9NQ79 661 aa23.32■■□□□ 1.32
VPS53-211ENST00000571805 DNAJC28Q9NX36 388 aa23.32■■□□□ 1.32
VPS53-211ENST00000571805 RAD54BQ9Y620 910 aa23.32■■□□□ 1.32
VPS53-211ENST00000571805 ZCWPW2A0A1B0GU75 182 aa23.32■■□□□ 1.32
VPS53-211ENST00000571805 YJEFN3A6XGL0 299 aa23.32■■□□□ 1.32
VPS53-211ENST00000571805 KLHL2O95198 593 aa23.32■■□□□ 1.32
VPS53-211ENST00000571805 FAM163BP0C2L3 166 aa23.32■■□□□ 1.32
VPS53-211ENST00000571805 ABCE1P61221 599 aaKnown RBP23.32■■□□□ 1.32
VPS53-211ENST00000571805 KCTD11Q693B1 232 aa23.32■■□□□ 1.32
VPS53-211ENST00000571805 DPY19L2Q6NUT2 758 aa23.32■■□□□ 1.32
VPS53-211ENST00000571805 ANKRD23Q86SG2 305 aa23.32■■□□□ 1.32
VPS53-211ENST00000571805 PPP1R10Q96QC0 940 aaKnown RBP23.32■■□□□ 1.32
VPS53-211ENST00000571805 CASS4Q9NQ75 786 aa23.32■■□□□ 1.32
VPS53-211ENST00000571805 KRT82Q9NSB4 513 aa23.32■■□□□ 1.32
VPS53-211ENST00000571805 FBXW11Q9UKB1 542 aa23.32■■□□□ 1.32
VPS53-211ENST00000571805 SOX13Q9UN79 622 aa23.32■■□□□ 1.32
VPS53-211ENST00000571805 A0A088AWK7 358 aa23.31■■□□□ 1.32
VPS53-211ENST00000571805 SIN3BO75182 1162 aa23.31■■□□□ 1.32
VPS53-211ENST00000571805 HCAR3P49019 387 aa23.31■■□□□ 1.32
VPS53-211ENST00000571805 DAOAP59103 153 aa23.31■■□□□ 1.32
VPS53-211ENST00000571805 MRPS35P82673 323 aaKnown RBP23.31■■□□□ 1.32
VPS53-211ENST00000571805 PPIDQ08752 370 aaKnown RBP23.31■■□□□ 1.32
VPS53-211ENST00000571805 FRG1Q14331 258 aaKnown RBP23.31■■□□□ 1.32
VPS53-211ENST00000571805 PLD6Q8N2A8 252 aaKnown RBP23.31■■□□□ 1.32
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms