RNA–Protein interactions for RNA: ENST00000563448.1

SMG1-208, Transcript of SMG1, nonsense mediated mRNA decay associated PI3K related kinase, humanhuman

TSL 2

Gene SMG1, Length 2,016 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG1-208ENST00000563448 TRIOBPQ9H2D6 2365 aa10.46□□□□□ -0.74
SMG1-208ENST00000563448 REV3LO60673 3130 aa10.45□□□□□ -0.74
SMG1-208ENST00000563448 BCLAF3A2AJT9 711 aaKnown RBP10.45□□□□□ -0.74
SMG1-208ENST00000563448 TRDMT1O14717 391 aaKnown RBP10.45□□□□□ -0.74
SMG1-208ENST00000563448 PRAMEF12O95522 483 aa10.45□□□□□ -0.74
SMG1-208ENST00000563448 KRT14P02533 472 aa10.45□□□□□ -0.74
SMG1-208ENST00000563448 ETS1P14921 441 aa10.45□□□□□ -0.74
SMG1-208ENST00000563448 POU3F3P20264 500 aaPredicted RBP10.45□□□□□ -0.74
SMG1-208ENST00000563448 RBL1P28749 1068 aa10.45□□□□□ -0.74
SMG1-208ENST00000563448 SERPINB6P35237 376 aa10.45□□□□□ -0.74
SMG1-208ENST00000563448 LMNB2Q03252 620 aa10.45□□□□□ -0.74
SMG1-208ENST00000563448 DLX2Q07687 328 aaPredicted RBP10.45□□□□□ -0.74
SMG1-208ENST00000563448 PTK6Q13882 451 aa10.45□□□□□ -0.74
SMG1-208ENST00000563448 CBX2Q14781 532 aaPredicted RBP10.45□□□□□ -0.74
SMG1-208ENST00000563448 CIR1Q86X95 450 aaPredicted RBP10.45□□□□□ -0.74
SMG1-208ENST00000563448 ARHGAP12Q8IWW6 846 aa10.45□□□□□ -0.74
SMG1-208ENST00000563448 CFAP52Q8N1V2 620 aa10.45□□□□□ -0.74
SMG1-208ENST00000563448 TTC16Q8NEE8 873 aa10.45□□□□□ -0.74
SMG1-208ENST00000563448 SH3RF2Q8TEC5 729 aa10.45□□□□□ -0.74
SMG1-208ENST00000563448 CASKIN2Q8WXE0 1202 aa10.45□□□□□ -0.74
SMG1-208ENST00000563448 CELF6Q96J87 481 aaKnown RBP10.45□□□□□ -0.74
SMG1-208ENST00000563448 ERP44Q9BS26 406 aa10.45□□□□□ -0.74
SMG1-208ENST00000563448 USP29Q9HBJ7 922 aa10.45□□□□□ -0.74
SMG1-208ENST00000563448 ZMYM5Q9UJ78 669 aa10.45□□□□□ -0.74
SMG1-208ENST00000563448 LSM7Q9UK45 103 aaKnown RBP10.45□□□□□ -0.74
SMG1-208ENST00000563448 RAD54BQ9Y620 910 aa10.45□□□□□ -0.74
SMG1-208ENST00000563448 ZFP37Q9Y6Q3 630 aaPredicted RBP10.45□□□□□ -0.74
SMG1-208ENST00000563448 ANKRD36A6QL64 1941 aa10.45□□□□□ -0.74
SMG1-208ENST00000563448 ESYT3A0FGR9 886 aa10.45□□□□□ -0.74
SMG1-208ENST00000563448 SGK1O00141 431 aa10.45□□□□□ -0.74
SMG1-208ENST00000563448 GFRA2O00451 464 aa10.45□□□□□ -0.74
SMG1-208ENST00000563448 RRP9O43818 475 aaKnown RBP10.45□□□□□ -0.74
SMG1-208ENST00000563448 TSPAN3O60637 253 aa10.45□□□□□ -0.74
SMG1-208ENST00000563448 TBX10O75333 385 aa10.45□□□□□ -0.74
SMG1-208ENST00000563448 VAV1P15498 845 aa10.45□□□□□ -0.74
SMG1-208ENST00000563448 FSHRP23945 695 aa10.45□□□□□ -0.74
SMG1-208ENST00000563448 NRLP54845 237 aa10.45□□□□□ -0.74
SMG1-208ENST00000563448 VSNL1P62760 191 aa10.45□□□□□ -0.74
SMG1-208ENST00000563448 GALNT2Q10471 571 aa10.45□□□□□ -0.74
SMG1-208ENST00000563448 PPP1R7Q15435 360 aa10.45□□□□□ -0.74
SMG1-208ENST00000563448 TRIP13Q15645 432 aaPredicted RBP10.45□□□□□ -0.74
SMG1-208ENST00000563448 CTC1Q2NKJ3 1217 aa10.45□□□□□ -0.74
SMG1-208ENST00000563448 SLC45A4Q5BKX6 768 aa10.45□□□□□ -0.74
SMG1-208ENST00000563448 FAM182AQ5T1J6 154 aa10.45□□□□□ -0.74
SMG1-208ENST00000563448 AFMIDQ63HM1 303 aa10.45□□□□□ -0.74
SMG1-208ENST00000563448 DUPD1Q68J44 220 aa10.45□□□□□ -0.74
SMG1-208ENST00000563448 WDR93Q6P2C0 686 aa10.45□□□□□ -0.74
SMG1-208ENST00000563448 SYDE1Q6ZW31 735 aaPredicted RBP10.45□□□□□ -0.74
SMG1-208ENST00000563448 GSTA5Q7RTV2 222 aa10.45□□□□□ -0.74
SMG1-208ENST00000563448 TFAP2DQ7Z6R9 452 aa10.45□□□□□ -0.74
SMG1-208ENST00000563448 DDX42Q86XP3 938 aaKnown RBP eCLIP10.45□□□□□ -0.74
SMG1-208ENST00000563448 CDKL3Q8IVW4 592 aaPredicted RBP10.45□□□□□ -0.74
SMG1-208ENST00000563448 BBS7Q8IWZ6 715 aa10.45□□□□□ -0.74
SMG1-208ENST00000563448 SEC14L1Q92503 715 aa10.45□□□□□ -0.74
SMG1-208ENST00000563448 QKIQ96PU8 341 aaKnown RBP eCLIP10.45□□□□□ -0.74
SMG1-208ENST00000563448 LGMNQ99538 433 aa10.45□□□□□ -0.74
SMG1-208ENST00000563448 DDX50Q9BQ39 737 aaKnown RBP10.45□□□□□ -0.74
SMG1-208ENST00000563448 TRIM31Q9BZY9 425 aa10.45□□□□□ -0.74
SMG1-208ENST00000563448 SLC39A8Q9C0K1 460 aa10.45□□□□□ -0.74
SMG1-208ENST00000563448 RAB17Q9H0T7 212 aa10.45□□□□□ -0.74
SMG1-208ENST00000563448 S1PR5Q9H228 398 aa10.45□□□□□ -0.74
SMG1-208ENST00000563448 DPH5Q9H2P9 285 aa10.45□□□□□ -0.74
SMG1-208ENST00000563448 NOL6Q9H6R4 1146 aaKnown RBP10.45□□□□□ -0.74
SMG1-208ENST00000563448 TDP1Q9NUW8 608 aa10.45□□□□□ -0.74
SMG1-208ENST00000563448 RAB21Q9UL25 225 aa10.45□□□□□ -0.74
SMG1-208ENST00000563448 ZNF510Q9Y2H8 683 aa10.45□□□□□ -0.74
SMG1-208ENST00000563448 UTP11Q9Y3A2 253 aaKnown RBP10.45□□□□□ -0.74
SMG1-208ENST00000563448 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP10.44□□□□□ -0.74
SMG1-208ENST00000563448 E2F8A0AVK6 867 aa10.44□□□□□ -0.74
SMG1-208ENST00000563448 HACD1B0YJ81 288 aa10.44□□□□□ -0.74
SMG1-208ENST00000563448 GAS8O95995 478 aa10.44□□□□□ -0.74
SMG1-208ENST00000563448 ZSCAN5DPP0CG00 497 aa10.44□□□□□ -0.74
SMG1-208ENST00000563448 TCF3P15923 654 aa10.44□□□□□ -0.74
SMG1-208ENST00000563448 WEE1P30291 646 aa10.44□□□□□ -0.74
SMG1-208ENST00000563448 RPS24P62847 133 aaKnown RBP10.44□□□□□ -0.74
SMG1-208ENST00000563448 PDK1Q15118 436 aa10.44□□□□□ -0.74
SMG1-208ENST00000563448 ZNF77Q15935 545 aa10.44□□□□□ -0.74
SMG1-208ENST00000563448 RABGAP1LQ5R372 815 aa10.44□□□□□ -0.74
SMG1-208ENST00000563448 ARID3BQ8IVW6 561 aaPredicted RBP10.44□□□□□ -0.74
SMG1-208ENST00000563448 UMODL1-AS1Q8N2C9 162 aa10.44□□□□□ -0.74
SMG1-208ENST00000563448 LZTR1Q8N653 840 aa10.44□□□□□ -0.74
SMG1-208ENST00000563448 TFB1MQ8WVM0 346 aaKnown RBP10.44□□□□□ -0.74
SMG1-208ENST00000563448 RSAD2Q8WXG1 361 aa10.44□□□□□ -0.74
SMG1-208ENST00000563448 RUBCNQ92622 972 aa10.44□□□□□ -0.74
SMG1-208ENST00000563448 P2RY11Q96G91 374 aa10.44□□□□□ -0.74
SMG1-208ENST00000563448 LRCH3Q96II8 777 aa10.44□□□□□ -0.74
SMG1-208ENST00000563448 PKNOX2Q96KN3 472 aa10.44□□□□□ -0.74
SMG1-208ENST00000563448 SNX24Q9Y343 169 aa10.44□□□□□ -0.74
SMG1-208ENST00000563448 PPP1R12AO14974 1030 aaPredicted RBP10.43□□□□□ -0.74
SMG1-208ENST00000563448 KCNN4O15554 427 aa10.43□□□□□ -0.74
SMG1-208ENST00000563448 HOXB8P17481 243 aaPredicted RBP10.43□□□□□ -0.74
SMG1-208ENST00000563448 IVDP26440 423 aa10.43□□□□□ -0.74
SMG1-208ENST00000563448 STIP1P31948 543 aaKnown RBP10.43□□□□□ -0.74
SMG1-208ENST00000563448 LTBRP36941 435 aa10.43□□□□□ -0.74
SMG1-208ENST00000563448 GARSP41250 739 aaKnown RBP10.43□□□□□ -0.74
SMG1-208ENST00000563448 RPL21P46778 160 aaKnown RBP10.43□□□□□ -0.74
SMG1-208ENST00000563448 CDH4P55283 916 aa10.43□□□□□ -0.74
SMG1-208ENST00000563448 PPIDQ08752 370 aaKnown RBP10.43□□□□□ -0.74
SMG1-208ENST00000563448 USP4Q13107 963 aa10.43□□□□□ -0.74
SMG1-208ENST00000563448 PRKD1Q15139 912 aaPredicted RBP10.43□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms