RNA–Protein interactions for RNA: ENST00000562389.5

CLK3-207, Transcript of CDC like kinase 3, humanhuman

TSL 4

Gene CLK3, Length 572 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-207ENST00000562389 CHPFQ8IZ52 775 aa17.22■□□□□ 0.35
CLK3-207ENST00000562389 ARFGAP1Q8N6T3 406 aa17.22■□□□□ 0.35
CLK3-207ENST00000562389 NIPA2Q8N8Q9 360 aa17.22■□□□□ 0.35
CLK3-207ENST00000562389 ATOH1Q92858 354 aaPredicted RBP17.22■□□□□ 0.35
CLK3-207ENST00000562389 TTC17Q96AE7 1141 aa17.22■□□□□ 0.35
CLK3-207ENST00000562389 HHIPQ96QV1 700 aa17.22■□□□□ 0.35
CLK3-207ENST00000562389 ACOX2Q99424 681 aa17.22■□□□□ 0.35
CLK3-207ENST00000562389 ZSCAN32Q9NX65 697 aa17.22■□□□□ 0.35
CLK3-207ENST00000562389 UVRAGQ9P2Y5 699 aa17.22■□□□□ 0.35
CLK3-207ENST00000562389 ANAPC7Q9UJX3 599 aa17.22■□□□□ 0.35
CLK3-207ENST00000562389 INTS6Q9UL03 887 aaKnown RBP17.22■□□□□ 0.35
CLK3-207ENST00000562389 TBC1D30Q9Y2I9 924 aa17.22■□□□□ 0.35
CLK3-207ENST00000562389 CKAP5Q14008 2032 aa17.21■□□□□ 0.35
CLK3-207ENST00000562389 MUC6Q6W4X9 2439 aa17.21■□□□□ 0.35
CLK3-207ENST00000562389 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP17.21■□□□□ 0.35
CLK3-207ENST00000562389 CCDC163A0A0D9SF12 145 aa17.21■□□□□ 0.35
CLK3-207ENST00000562389 SRGAP2O75044 1071 aa17.21■□□□□ 0.35
CLK3-207ENST00000562389 LRCH4O75427 683 aa17.21■□□□□ 0.35
CLK3-207ENST00000562389 CNTN5O94779 1100 aa17.21■□□□□ 0.35
CLK3-207ENST00000562389 MOCS3O95396 460 aa17.21■□□□□ 0.35
CLK3-207ENST00000562389 ATP5BP06576 529 aaKnown RBP17.21■□□□□ 0.35
CLK3-207ENST00000562389 HOXB2P14652 356 aa17.21■□□□□ 0.35
CLK3-207ENST00000562389 POLR2EP19388 210 aaKnown RBP17.21■□□□□ 0.35
CLK3-207ENST00000562389 PCK1P35558 622 aa17.21■□□□□ 0.35
CLK3-207ENST00000562389 DGKEP52429 567 aa17.21■□□□□ 0.35
CLK3-207ENST00000562389 PLK1P53350 603 aa17.21■□□□□ 0.35
CLK3-207ENST00000562389 ZNF177Q13360 481 aaPredicted RBP17.21■□□□□ 0.35
CLK3-207ENST00000562389 ZNF234Q14588 700 aa17.21■□□□□ 0.35
CLK3-207ENST00000562389 PLEKHG6Q3KR16 790 aa17.21■□□□□ 0.35
CLK3-207ENST00000562389 PITRM1Q5JRX3 1037 aa17.21■□□□□ 0.35
CLK3-207ENST00000562389 SDE2Q6IQ49 451 aa17.21■□□□□ 0.35
CLK3-207ENST00000562389 TMEM92Q6UXU6 159 aa17.21■□□□□ 0.35
CLK3-207ENST00000562389 CCDC170Q8IYT3 715 aa17.21■□□□□ 0.35
CLK3-207ENST00000562389 ZBTB44Q8NCP5 570 aa17.21■□□□□ 0.35
CLK3-207ENST00000562389 TSTD1Q8NFU3 115 aa17.21■□□□□ 0.35
CLK3-207ENST00000562389 ZNF564Q8TBZ8 553 aaPredicted RBP17.21■□□□□ 0.35
CLK3-207ENST00000562389 ZYG11BQ9C0D3 744 aa17.21■□□□□ 0.35
CLK3-207ENST00000562389 RETREG1Q9H6L5 497 aa17.21■□□□□ 0.35
CLK3-207ENST00000562389 CACNA2D2Q9NY47 1150 aa17.21■□□□□ 0.35
CLK3-207ENST00000562389 MPP6Q9NZW5 540 aa17.21■□□□□ 0.35
CLK3-207ENST00000562389 IP6K2Q9UHH9 426 aa17.21■□□□□ 0.35
CLK3-207ENST00000562389 INTUQ9ULD6 942 aa17.21■□□□□ 0.35
CLK3-207ENST00000562389 NEU3Q9UQ49 428 aa17.21■□□□□ 0.35
CLK3-207ENST00000562389 PCDHGA2Q9Y5H1 932 aa17.21■□□□□ 0.35
CLK3-207ENST00000562389 EML5Q05BV3 1969 aa17.2■□□□□ 0.34
CLK3-207ENST00000562389 FAM72CH0Y354 149 aa17.2■□□□□ 0.34
CLK3-207ENST00000562389 LRIG2O94898 1065 aa17.2■□□□□ 0.34
CLK3-207ENST00000562389 LCA5LO95447 670 aa17.2■□□□□ 0.34
CLK3-207ENST00000562389 APBB3O95704 486 aa17.2■□□□□ 0.34
CLK3-207ENST00000562389 ASLP04424 464 aa17.2■□□□□ 0.34
CLK3-207ENST00000562389 DLDP09622 509 aaKnown RBP17.2■□□□□ 0.34
CLK3-207ENST00000562389 MIPP30301 263 aa17.2■□□□□ 0.34
CLK3-207ENST00000562389 L1CAMP32004 1257 aa17.2■□□□□ 0.34
CLK3-207ENST00000562389 CSKP41240 450 aa17.2■□□□□ 0.34
CLK3-207ENST00000562389 IL12RB1P42701 662 aa17.2■□□□□ 0.34
CLK3-207ENST00000562389 NHLH1Q02575 133 aa17.2■□□□□ 0.34
CLK3-207ENST00000562389 PTPRNQ16849 979 aa17.2■□□□□ 0.34
CLK3-207ENST00000562389 FAM72AQ5TYM5 149 aa17.2■□□□□ 0.34
CLK3-207ENST00000562389 FAM72DQ6L9T8 149 aa17.2■□□□□ 0.34
CLK3-207ENST00000562389 ZC3H14Q6PJT7 736 aaKnown RBP17.2■□□□□ 0.34
CLK3-207ENST00000562389 SETD3Q86TU7 594 aaPredicted RBP17.2■□□□□ 0.34
CLK3-207ENST00000562389 LONP2Q86WA8 852 aa17.2■□□□□ 0.34
CLK3-207ENST00000562389 FAM72BQ86X60 149 aa17.2■□□□□ 0.34
CLK3-207ENST00000562389 TMTC1Q8IUR5 882 aa17.2■□□□□ 0.34
CLK3-207ENST00000562389 SORCS1Q8WY21 1168 aa17.2■□□□□ 0.34
CLK3-207ENST00000562389 TBC1D31Q96DN5 1066 aa17.2■□□□□ 0.34
CLK3-207ENST00000562389 PEBP4Q96S96 227 aa17.2■□□□□ 0.34
CLK3-207ENST00000562389 PPP1R9BQ96SB3 815 aa17.2■□□□□ 0.34
CLK3-207ENST00000562389 MAGEB5Q9BZ81 275 aa17.2■□□□□ 0.34
CLK3-207ENST00000562389 POLMQ9NP87 494 aaPredicted RBP17.2■□□□□ 0.34
CLK3-207ENST00000562389 CTTNBP2NLQ9P2B4 639 aa17.2■□□□□ 0.34
CLK3-207ENST00000562389 ZNF212Q9UDV6 495 aa17.2■□□□□ 0.34
CLK3-207ENST00000562389 EBF1Q9UH73 591 aa17.2■□□□□ 0.34
CLK3-207ENST00000562389 LCMT1Q9UIC8 334 aa17.2■□□□□ 0.34
CLK3-207ENST00000562389 STON1Q9Y6Q2 735 aa17.2■□□□□ 0.34
CLK3-207ENST00000562389 CHD5Q8TDI0 1954 aa17.2■□□□□ 0.34
CLK3-207ENST00000562389 A0A1W2PQF6 199 aa17.19■□□□□ 0.34
CLK3-207ENST00000562389 EIF3CLB5ME19 914 aaKnown RBP17.19■□□□□ 0.34
CLK3-207ENST00000562389 MYO1FO00160 1098 aa17.19■□□□□ 0.34
CLK3-207ENST00000562389 PRPSAP2O60256 369 aa17.19■□□□□ 0.34
CLK3-207ENST00000562389 LILRB5O75023 590 aa17.19■□□□□ 0.34
CLK3-207ENST00000562389 MZF1P28698 734 aaPredicted RBP17.19■□□□□ 0.34
CLK3-207ENST00000562389 HOXC13P31276 330 aa17.19■□□□□ 0.34
CLK3-207ENST00000562389 CYLC1P35663 651 aaPredicted RBP17.19■□□□□ 0.34
CLK3-207ENST00000562389 NBL1P41271 181 aa17.19■□□□□ 0.34
CLK3-207ENST00000562389 WASP42768 502 aa17.19■□□□□ 0.34
CLK3-207ENST00000562389 DMWDQ09019 674 aa17.19■□□□□ 0.34
CLK3-207ENST00000562389 SEMA3BQ13214 749 aa17.19■□□□□ 0.34
CLK3-207ENST00000562389 C6orf118Q5T5N4 469 aa17.19■□□□□ 0.34
CLK3-207ENST00000562389 ERMARDQ5T6L9 678 aa17.19■□□□□ 0.34
CLK3-207ENST00000562389 CYP4V2Q6ZWL3 525 aaPredicted RBP17.19■□□□□ 0.34
CLK3-207ENST00000562389 WDR5BQ86VZ2 330 aa17.19■□□□□ 0.34
CLK3-207ENST00000562389 RASSF3Q86WH2 238 aa17.19■□□□□ 0.34
CLK3-207ENST00000562389 PSTKQ8IV42 348 aaKnown RBP17.19■□□□□ 0.34
CLK3-207ENST00000562389 APCDD1Q8J025 514 aa17.19■□□□□ 0.34
CLK3-207ENST00000562389 PYROXD2Q8N2H3 581 aa17.19■□□□□ 0.34
CLK3-207ENST00000562389 OR52K2Q8NGK3 314 aa17.19■□□□□ 0.34
CLK3-207ENST00000562389 CYB5D2Q8WUJ1 264 aa17.19■□□□□ 0.34
CLK3-207ENST00000562389 ALG14Q96F25 216 aa17.19■□□□□ 0.34
CLK3-207ENST00000562389 BTBD6Q96KE9 485 aa17.19■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms