RNA–Protein interactions for RNA: ENST00000554872.5

CCDC88C-209, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 4

Gene CCDC88C, Length 1,165 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-209ENST00000554872 SLC20A1Q8WUM9 679 aa16.56■□□□□ 0.24
CCDC88C-209ENST00000554872 PIGKQ92643 395 aa16.56■□□□□ 0.24
CCDC88C-209ENST00000554872 TCEAL3Q969E4 200 aa16.56■□□□□ 0.24
CCDC88C-209ENST00000554872 RNF34Q969K3 372 aa16.56■□□□□ 0.24
CCDC88C-209ENST00000554872 C1orf74Q96LT6 269 aa16.56■□□□□ 0.24
CCDC88C-209ENST00000554872 EDEM2Q9BV94 578 aa16.56■□□□□ 0.24
CCDC88C-209ENST00000554872 SMOC1Q9H4F8 434 aa16.56■□□□□ 0.24
CCDC88C-209ENST00000554872 NLRC4Q9NPP4 1024 aa16.56■□□□□ 0.24
CCDC88C-209ENST00000554872 PRSS16Q9NQE7 514 aa16.56■□□□□ 0.24
CCDC88C-209ENST00000554872 SCML1Q9UN30 329 aa16.56■□□□□ 0.24
CCDC88C-209ENST00000554872 HS3ST4Q9Y661 456 aa16.56■□□□□ 0.24
CCDC88C-209ENST00000554872 IGLV3-10A0A075B6K4 115 aa16.55■□□□□ 0.24
CCDC88C-209ENST00000554872 NDUFS2O75306 463 aa16.55■□□□□ 0.24
CCDC88C-209ENST00000554872 PAGE1O75459 146 aa16.55■□□□□ 0.24
CCDC88C-209ENST00000554872 CLDN11O75508 207 aa16.55■□□□□ 0.24
CCDC88C-209ENST00000554872 HLA-EP13747 358 aa16.55■□□□□ 0.24
CCDC88C-209ENST00000554872 ITPKAP23677 461 aa16.55■□□□□ 0.24
CCDC88C-209ENST00000554872 FLT3P36888 993 aa16.55■□□□□ 0.24
CCDC88C-209ENST00000554872 SULT1E1P49888 294 aa16.55■□□□□ 0.24
CCDC88C-209ENST00000554872 ST8SIA6P61647 398 aa16.55■□□□□ 0.24
CCDC88C-209ENST00000554872 ECT2LQ008S8 904 aa16.55■□□□□ 0.24
CCDC88C-209ENST00000554872 DUOXA1Q1HG43 343 aa16.55■□□□□ 0.24
CCDC88C-209ENST00000554872 CAVIN1Q6NZI2 390 aaKnown RBP16.55■□□□□ 0.24
CCDC88C-209ENST00000554872 SND1Q7KZF4 910 aaKnown RBP eCLIP16.55■□□□□ 0.24
CCDC88C-209ENST00000554872 CPA5Q8WXQ8 436 aa16.55■□□□□ 0.24
CCDC88C-209ENST00000554872 DNASE2BQ8WZ79 361 aa16.55■□□□□ 0.24
CCDC88C-209ENST00000554872 TOE1Q96GM8 510 aaKnown RBP16.55■□□□□ 0.24
CCDC88C-209ENST00000554872 HSPA12BQ96MM6 686 aa16.55■□□□□ 0.24
CCDC88C-209ENST00000554872 TBCBQ99426 244 aa16.55■□□□□ 0.24
CCDC88C-209ENST00000554872 NUP58Q9BVL2 599 aa16.55■□□□□ 0.24
CCDC88C-209ENST00000554872 NUSAP1Q9BXS6 441 aaKnown RBP16.55■□□□□ 0.24
CCDC88C-209ENST00000554872 RSPH9Q9H1X1 276 aaPredicted RBP16.55■□□□□ 0.24
CCDC88C-209ENST00000554872 WDCPQ9H6R7 721 aa16.55■□□□□ 0.24
CCDC88C-209ENST00000554872 CAPN10Q9HC96 672 aa16.55■□□□□ 0.24
CCDC88C-209ENST00000554872 CD93Q9NPY3 652 aa16.55■□□□□ 0.24
CCDC88C-209ENST00000554872 RTN4Q9NQC3 1192 aaKnown RBP16.55■□□□□ 0.24
CCDC88C-209ENST00000554872 TMEM74BQ9NUR3 256 aa16.55■□□□□ 0.24
CCDC88C-209ENST00000554872 SUSD2Q9UGT4 822 aa16.55■□□□□ 0.24
CCDC88C-209ENST00000554872 TBC1D30Q9Y2I9 924 aa16.55■□□□□ 0.24
CCDC88C-209ENST00000554872 CEP192Q8TEP8 1941 aa16.55■□□□□ 0.24
CCDC88C-209ENST00000554872 NCOR2Q9Y618 2525 aa16.54■□□□□ 0.24
CCDC88C-209ENST00000554872 TARSL2A2RTX5 802 aaKnown RBP16.54■□□□□ 0.24
CCDC88C-209ENST00000554872 I6L893 689 aaPredicted RBP16.54■□□□□ 0.24
CCDC88C-209ENST00000554872 SERPINF2P08697 491 aa16.54■□□□□ 0.24
CCDC88C-209ENST00000554872 CCDC172P0C7W6 258 aa16.54■□□□□ 0.24
CCDC88C-209ENST00000554872 ACADMP11310 421 aa16.54■□□□□ 0.24
CCDC88C-209ENST00000554872 TFE3P19532 575 aaPredicted RBP16.54■□□□□ 0.24
CCDC88C-209ENST00000554872 RDXP35241 583 aaKnown RBP16.54■□□□□ 0.24
CCDC88C-209ENST00000554872 CDH4P55283 916 aa16.54■□□□□ 0.24
CCDC88C-209ENST00000554872 DEUP1Q05D60 604 aa16.54■□□□□ 0.24
CCDC88C-209ENST00000554872 PTP4A2Q12974 167 aa16.54■□□□□ 0.24
CCDC88C-209ENST00000554872 TRIM61Q5EBN2 209 aa16.54■□□□□ 0.24
CCDC88C-209ENST00000554872 SYCP2LQ5T4T6 812 aa16.54■□□□□ 0.24
CCDC88C-209ENST00000554872 ZNF776Q68DI1 518 aaPredicted RBP16.54■□□□□ 0.24
CCDC88C-209ENST00000554872 IL31Q6EBC2 164 aa16.54■□□□□ 0.24
CCDC88C-209ENST00000554872 TRNP1Q6NT89 227 aa16.54■□□□□ 0.24
CCDC88C-209ENST00000554872 PHF13Q86YI8 300 aaPredicted RBP16.54■□□□□ 0.24
CCDC88C-209ENST00000554872 IGSF8Q969P0 613 aa16.54■□□□□ 0.24
CCDC88C-209ENST00000554872 ALG14Q96F25 216 aa16.54■□□□□ 0.24
CCDC88C-209ENST00000554872 RPRD1AQ96P16 312 aaPredicted RBP16.54■□□□□ 0.24
CCDC88C-209ENST00000554872 HAPLN3Q96S86 360 aa16.54■□□□□ 0.24
CCDC88C-209ENST00000554872 ERVW-1Q9UQF0 538 aa16.54■□□□□ 0.24
CCDC88C-209ENST00000554872 OR51B4Q9Y5P0 310 aa16.54■□□□□ 0.24
CCDC88C-209ENST00000554872 PCDH15Q96QU1 1955 aa16.53■□□□□ 0.24
CCDC88C-209ENST00000554872 SYNJ2BP-COX16A0A087WUM0 186 aa16.53■□□□□ 0.24
CCDC88C-209ENST00000554872 A0A1W2PQC6 194 aa16.53■□□□□ 0.24
CCDC88C-209ENST00000554872 DRGXA6NNA5 263 aa16.53■□□□□ 0.24
CCDC88C-209ENST00000554872 PATE3B3GLJ2 98 aa16.53■□□□□ 0.24
CCDC88C-209ENST00000554872 CDX4O14627 284 aaPredicted RBP16.53■□□□□ 0.24
CCDC88C-209ENST00000554872 ADCY5O95622 1261 aa16.53■□□□□ 0.24
CCDC88C-209ENST00000554872 FERP16591 822 aa16.53■□□□□ 0.24
CCDC88C-209ENST00000554872 PTMSP20962 102 aa16.53■□□□□ 0.24
CCDC88C-209ENST00000554872 PTPN9P43378 593 aa16.53■□□□□ 0.24
CCDC88C-209ENST00000554872 ZNF165P49910 485 aa16.53■□□□□ 0.24
CCDC88C-209ENST00000554872 RPS14P62263 151 aaKnown RBP16.53■□□□□ 0.24
CCDC88C-209ENST00000554872 IRX4P78413 519 aa16.53■□□□□ 0.24
CCDC88C-209ENST00000554872 CLEC16AQ2KHT3 1053 aa16.53■□□□□ 0.24
CCDC88C-209ENST00000554872 WDR45BQ5MNZ6 344 aa16.53■□□□□ 0.24
CCDC88C-209ENST00000554872 ARTNQ5T4W7 220 aa16.53■□□□□ 0.24
CCDC88C-209ENST00000554872 MMS22LQ6ZRQ5 1243 aa16.53■□□□□ 0.24
CCDC88C-209ENST00000554872 USP30Q70CQ3 517 aa16.53■□□□□ 0.24
CCDC88C-209ENST00000554872 ARMCX6Q7L4S7 300 aa16.53■□□□□ 0.24
CCDC88C-209ENST00000554872 PCMTD1Q96MG8 357 aaPredicted RBP16.53■□□□□ 0.24
CCDC88C-209ENST00000554872 SYT11Q9BT88 431 aa16.53■□□□□ 0.24
CCDC88C-209ENST00000554872 TKTL2Q9H0I9 626 aa16.53■□□□□ 0.24
CCDC88C-209ENST00000554872 RETREG1Q9H6L5 497 aa16.53■□□□□ 0.24
CCDC88C-209ENST00000554872 TMEM9BQ9NQ34 198 aa16.53■□□□□ 0.24
CCDC88C-209ENST00000554872 ANLNQ9NQW6 1124 aa16.53■□□□□ 0.24
CCDC88C-209ENST00000554872 COX16Q9P0S2 106 aa16.53■□□□□ 0.24
CCDC88C-209ENST00000554872 VANGL2Q9ULK5 521 aa16.53■□□□□ 0.24
CCDC88C-209ENST00000554872 SLC6A14Q9UN76 642 aa16.53■□□□□ 0.24
CCDC88C-209ENST00000554872 CACNA1EQ15878 2313 aa16.52■□□□□ 0.24
CCDC88C-209ENST00000554872 EDDM13A0A1B0GTR0 161 aa16.52■□□□□ 0.24
CCDC88C-209ENST00000554872 METTL12A8MUP2 240 aa16.52■□□□□ 0.24
CCDC88C-209ENST00000554872 NSFP46459 744 aaKnown RBP16.52■□□□□ 0.24
CCDC88C-209ENST00000554872 RNASE9P60153 205 aaKnown RBP16.52■□□□□ 0.24
CCDC88C-209ENST00000554872 NRG1Q02297 640 aaPredicted RBP16.52■□□□□ 0.24
CCDC88C-209ENST00000554872 C1QBPQ07021 282 aaKnown RBP16.52■□□□□ 0.24
CCDC88C-209ENST00000554872 SFSWAPQ12872 951 aaKnown RBP16.52■□□□□ 0.24
CCDC88C-209ENST00000554872 IQCB1Q15051 598 aa16.52■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms