RNA–Protein interactions for RNA: ENST00000530836.5

VPS28-212, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,613 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-212ENST00000530836 FAM153CQ494X1 144 aa21.82■■□□□ 1.08
VPS28-212ENST00000530836 SPDYCQ5MJ68 293 aa21.82■■□□□ 1.08
VPS28-212ENST00000530836 MANEALQ5VSG8 457 aa21.82■■□□□ 1.08
VPS28-212ENST00000530836 MIB1Q86YT6 1006 aa21.82■■□□□ 1.08
VPS28-212ENST00000530836 LZTR1Q8N653 840 aa21.82■■□□□ 1.08
VPS28-212ENST00000530836 TFB1MQ8WVM0 346 aaKnown RBP21.82■■□□□ 1.08
VPS28-212ENST00000530836 QKIQ96PU8 341 aaKnown RBP eCLIP21.82■■□□□ 1.08
VPS28-212ENST00000530836 SIK2Q9H0K1 926 aa21.82■■□□□ 1.08
VPS28-212ENST00000530836 NEUROG2Q9H2A3 272 aa21.82■■□□□ 1.08
VPS28-212ENST00000530836 ETNK2Q9NVF9 386 aa21.82■■□□□ 1.08
VPS28-212ENST00000530836 FAM153AQ9UHL3 310 aa21.82■■□□□ 1.08
VPS28-212ENST00000530836 HSPA9P38646 679 aaKnown RBP21.81■■□□□ 1.08
VPS28-212ENST00000530836 SLC10A2Q12908 348 aaPredicted RBP21.81■■□□□ 1.08
VPS28-212ENST00000530836 GPS1Q13098 491 aa21.81■■□□□ 1.08
VPS28-212ENST00000530836 P3H1Q32P28 736 aa21.81■■□□□ 1.08
VPS28-212ENST00000530836 LRRC31Q6UY01 552 aa21.81■■□□□ 1.08
VPS28-212ENST00000530836 PHF6Q8IWS0 365 aaKnown RBP eCLIP21.81■■□□□ 1.08
VPS28-212ENST00000530836 FAM71DQ8N9W8 422 aa21.81■■□□□ 1.08
VPS28-212ENST00000530836 CORO1BQ9BR76 489 aa21.81■■□□□ 1.08
VPS28-212ENST00000530836 POMKQ9H5K3 350 aa21.81■■□□□ 1.08
VPS28-212ENST00000530836 USP29Q9HBJ7 922 aa21.81■■□□□ 1.08
VPS28-212ENST00000530836 PAK5Q9P286 719 aa21.81■■□□□ 1.08
VPS28-212ENST00000530836 TPX2Q9ULW0 747 aaKnown RBP21.81■■□□□ 1.08
VPS28-212ENST00000530836 HS3ST4Q9Y661 456 aa21.81■■□□□ 1.08
VPS28-212ENST00000530836 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP21.8■■□□□ 1.08
VPS28-212ENST00000530836 DNALI1O14645 258 aaPredicted RBP21.8■■□□□ 1.08
VPS28-212ENST00000530836 SLC34A2O95436 690 aa21.8■■□□□ 1.08
VPS28-212ENST00000530836 RHOP08100 348 aa21.8■■□□□ 1.08
VPS28-212ENST00000530836 BMP1P13497 986 aa21.8■■□□□ 1.08
VPS28-212ENST00000530836 IL9P15248 144 aa21.8■■□□□ 1.08
VPS28-212ENST00000530836 NTHL1P78549 312 aa21.8■■□□□ 1.08
VPS28-212ENST00000530836 SLMAPQ14BN4 828 aa21.8■■□□□ 1.08
VPS28-212ENST00000530836 IZUMO3Q5VZ72 239 aa21.8■■□□□ 1.08
VPS28-212ENST00000530836 PLD4Q96BZ4 506 aa21.8■■□□□ 1.08
VPS28-212ENST00000530836 LRRC3Q9BY71 257 aa21.8■■□□□ 1.08
VPS28-212ENST00000530836 PPARGC1AQ9UBK2 798 aaKnown RBP21.8■■□□□ 1.08
VPS28-212ENST00000530836 UNC80Q8N2C7 3258 aa21.8■■□□□ 1.08
VPS28-212ENST00000530836 KCNN4O15554 427 aa21.8■■□□□ 1.08
VPS28-212ENST00000530836 MFSD11O43934 449 aa21.8■■□□□ 1.08
VPS28-212ENST00000530836 MOCS2O96007 188 aaPredicted RBP21.8■■□□□ 1.08
VPS28-212ENST00000530836 VPS41P49754 854 aa21.8■■□□□ 1.08
VPS28-212ENST00000530836 ITGA8P53708 1063 aa21.8■■□□□ 1.08
VPS28-212ENST00000530836 EPHA5P54756 1037 aa21.8■■□□□ 1.08
VPS28-212ENST00000530836 GDF10P55107 478 aa21.8■■□□□ 1.08
VPS28-212ENST00000530836 MORF4L2Q15014 288 aa21.8■■□□□ 1.08
VPS28-212ENST00000530836 HEATR6Q6AI08 1181 aaKnown RBP21.8■■□□□ 1.08
VPS28-212ENST00000530836 HIBCHQ6NVY1 386 aaPredicted RBP21.8■■□□□ 1.08
VPS28-212ENST00000530836 RWDD4Q6NW29 188 aaKnown RBP21.8■■□□□ 1.08
VPS28-212ENST00000530836 HS6ST3Q8IZP7 471 aa21.8■■□□□ 1.08
VPS28-212ENST00000530836 LEMD2Q8NC56 503 aa21.8■■□□□ 1.08
VPS28-212ENST00000530836 AZIN2Q96A70 460 aa21.8■■□□□ 1.08
VPS28-212ENST00000530836 GDAP1L1Q96MZ0 367 aa21.8■■□□□ 1.08
VPS28-212ENST00000530836 RETREG1Q9H6L5 497 aa21.8■■□□□ 1.08
VPS28-212ENST00000530836 E9PAM4 449 aa21.79■■□□□ 1.08
VPS28-212ENST00000530836 MTSS1O43312 755 aa21.79■■□□□ 1.08
VPS28-212ENST00000530836 STK10O94804 968 aaKnown RBP21.79■■□□□ 1.08
VPS28-212ENST00000530836 OAS1P00973 400 aaKnown RBP21.79■■□□□ 1.08
VPS28-212ENST00000530836 RBL1P28749 1068 aa21.79■■□□□ 1.08
VPS28-212ENST00000530836 ZNF33AQ06730 810 aa21.79■■□□□ 1.08
VPS28-212ENST00000530836 GPS2Q13227 327 aa21.79■■□□□ 1.08
VPS28-212ENST00000530836 RHBDF2Q6PJF5 856 aa21.79■■□□□ 1.08
VPS28-212ENST00000530836 TMC3Q7Z5M5 1100 aa21.79■■□□□ 1.08
VPS28-212ENST00000530836 HOOK3Q86VS8 718 aa21.79■■□□□ 1.08
VPS28-212ENST00000530836 GLIS1Q8NBF1 620 aa21.79■■□□□ 1.08
VPS28-212ENST00000530836 PHF7Q9BWX1 381 aaPredicted RBP21.79■■□□□ 1.08
VPS28-212ENST00000530836 ASAH2Q9NR71 780 aa21.79■■□□□ 1.08
VPS28-212ENST00000530836 C5orf60A6NFR6 353 aa21.78■■□□□ 1.08
VPS28-212ENST00000530836 WASH4PA8MWX3 477 aa21.78■■□□□ 1.08
VPS28-212ENST00000530836 COCHO43405 550 aa21.78■■□□□ 1.08
VPS28-212ENST00000530836 PPFIA2O75334 1257 aa21.78■■□□□ 1.08
VPS28-212ENST00000530836 GCATO75600 419 aa21.78■■□□□ 1.08
VPS28-212ENST00000530836 SASH3O75995 380 aa21.78■■□□□ 1.08
VPS28-212ENST00000530836 F11P03951 625 aa21.78■■□□□ 1.08
VPS28-212ENST00000530836 ZSCAN5DPP0CG00 497 aa21.78■■□□□ 1.08
VPS28-212ENST00000530836 PFKLP17858 780 aa21.78■■□□□ 1.08
VPS28-212ENST00000530836 RPL22P35268 128 aaKnown RBP21.78■■□□□ 1.08
VPS28-212ENST00000530836 HARS2P49590 506 aaKnown RBP21.78■■□□□ 1.08
VPS28-212ENST00000530836 MS4A13Q5J8X5 152 aa21.78■■□□□ 1.08
VPS28-212ENST00000530836 ALS2CLQ60I27 953 aa21.78■■□□□ 1.08
VPS28-212ENST00000530836 TMC8Q8IU68 726 aa21.78■■□□□ 1.08
VPS28-212ENST00000530836 HTR3CQ8WXA8 447 aa21.78■■□□□ 1.08
VPS28-212ENST00000530836 SHOC2Q9UQ13 582 aa21.78■■□□□ 1.08
VPS28-212ENST00000530836 NEU3Q9UQ49 428 aa21.78■■□□□ 1.08
VPS28-212ENST00000530836 ZNF197O14709 1029 aa21.77■■□□□ 1.08
VPS28-212ENST00000530836 TP73O15350 636 aa21.77■■□□□ 1.08
VPS28-212ENST00000530836 FGF19O95750 216 aa21.77■■□□□ 1.08
VPS28-212ENST00000530836 ETS1P14921 441 aa21.77■■□□□ 1.08
VPS28-212ENST00000530836 FSHRP23945 695 aa21.77■■□□□ 1.08
VPS28-212ENST00000530836 DHX9Q08211 1270 aaKnown RBP21.77■■□□□ 1.08
VPS28-212ENST00000530836 PRKD1Q15139 912 aaPredicted RBP21.77■■□□□ 1.08
VPS28-212ENST00000530836 PIK3R6Q5UE93 754 aa21.77■■□□□ 1.08
VPS28-212ENST00000530836 LRRC49Q8IUZ0 686 aa21.77■■□□□ 1.08
VPS28-212ENST00000530836 PPIL6Q8IXY8 311 aa21.77■■□□□ 1.08
VPS28-212ENST00000530836 ZNF334Q9HCZ1 680 aaPredicted RBP21.77■■□□□ 1.08
VPS28-212ENST00000530836 HPCAL4Q9UM19 191 aa21.77■■□□□ 1.08
VPS28-212ENST00000530836 SNX10Q9Y5X0 201 aa21.77■■□□□ 1.08
VPS28-212ENST00000530836 C5orf42Q9H799 3197 aa21.77■■□□□ 1.08
VPS28-212ENST00000530836 IGLV3-10A0A075B6K4 115 aa21.77■■□□□ 1.07
VPS28-212ENST00000530836 CDC25CP30307 473 aa21.77■■□□□ 1.07
VPS28-212ENST00000530836 SLC11A2P49281 568 aa21.77■■□□□ 1.07
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms