RNA–Protein interactions for RNA: ENST00000516428.1

RNU4-54P-201, Transcript of RNA, U4 small nuclear 54, pseudogene, humanhuman

BASIC

Gene RNU4-54P, Length 129 nt, Biotype snRNA, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-54P-201ENST00000516428 PPARDQ03181 441 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 TLE1Q04724 770 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 ZBTB16Q05516 673 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 PPARAQ07869 468 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 PPP3CAQ08209 521 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 DSC1Q08554 894 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 NSUN2Q08J23 767 aaKnown RBP eCLIP0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 MGAT5Q09328 741 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 AP1B1Q10567 949 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 SCAPQ12770 1279 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 LRMPQ12912 555 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 FOXF2Q12947 444 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 PTP4A2Q12974 167 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 MRPL28Q13084 256 aaKnown RBP0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 IFT88Q13099 833 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 SLC13A2Q13183 592 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 CBX3Q13185 183 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 SLC14A1Q13336 389 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 CTBP1Q13363 440 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 RAB32Q13637 225 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 TNFAIP1Q13829 316 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 TRIM25Q14258 630 aaKnown RBP0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 HABP2Q14520 560 aaPredicted RBP0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 SLC29A2Q14542 456 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 KCNB1Q14721 858 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 CRYMQ14894 314 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 MYBPC3Q14896 1274 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 ZNF169Q14929 603 aaPredicted RBP0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 NOLC1Q14978 699 aaKnown RBP eCLIP0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 NOMO1Q15155 1222 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 GPR68Q15743 365 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 SMAD1Q15797 465 aaKnown RBP0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 ADIPOQQ15848 244 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 INAQ16352 499 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 NFIL3Q16649 462 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 INSCQ1MX18 579 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 TMEM266Q2M3C6 531 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 SMU1Q2TAY7 513 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 PRICKLE4Q2TBC4 344 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 BEAN1Q3B7T3 259 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 C2orf76Q3KRA6 126 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 KRTAP15-1Q3LI76 137 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 TBRG1Q3YBR2 411 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 ANKDD1AQ495B1 522 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 MMEL1Q495T6 779 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 TRIM60Q495X7 471 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 DUSP28Q4G0W2 176 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 PLEKHO1Q53GL0 409 aaPredicted RBP0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 GLE1Q53GS7 698 aaKnown RBP0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 ARHGAP15Q53QZ3 475 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 HSP90B2PQ58FF3 399 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 HSP90AA5PQ58FG0 334 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 MTX3Q5HYI7 312 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 C3orf38Q5JPI3 329 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 EEF1AKMT2Q5JPI9 291 aaKnown RBP0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 TOR1AIP1Q5JTV8 583 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 AARS2Q5JTZ9 985 aaKnown RBP0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 COLEC12Q5KU26 742 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 ZNF569Q5MCW4 686 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 ZBTB41Q5SVQ8 909 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 PRAMEF14Q5SWL7 426 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 CATSPEREQ5SY80 951 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 ZNF618Q5T7W0 954 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 TSTD2Q5T7W7 516 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 SLC9C2Q5TAH2 1124 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 FAXCQ5TGI0 409 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 LIPMQ5VYY2 423 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 MBLAC2Q68D91 279 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 RAB12Q6IQ22 244 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 GALNT17Q6IS24 598 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 KLHL10Q6JEL2 608 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 KRT80Q6KB66 452 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 LIN54Q6MZP7 749 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 MRNIPQ6NTE8 343 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 IRGCQ6NXR0 463 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 WDR73Q6P4I2 378 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 DCLRE1AQ6PJP8 1040 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 SLC30A9Q6PML9 568 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 SARM1Q6SZW1 724 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 CRTC1Q6UUV9 634 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 KDELC1Q6UW63 502 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 VSTM1Q6UX27 236 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 UNQ6494/PRO21346Q6UXR6 183 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 UNC5DQ6UXZ4 953 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 ATF7IPQ6VMQ6 1270 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 ZNF517Q6ZMY9 492 aaPredicted RBP0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 GADL1Q6ZQY3 521 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 Q6ZRM9 215 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 FAM83HQ6ZRV2 1179 aaPredicted RBP0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 MSANTD1Q6ZTZ1 278 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 KIAA0408Q6ZU52 694 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 UNC13DQ70J99 1090 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 IKBIPQ70UQ0 350 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 LARP4Q71RC2 724 aaKnown RBP eCLIP0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 MED25Q71SY5 747 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 RUFY3Q7L099 469 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 RHOUQ7L0Q8 258 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 MCM10Q7L590 875 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 RAB11FIP2Q7L804 512 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 ZNF551Q7Z340 670 aaPredicted RBP0.62□□□□□ -2.31
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms