RNA–Protein interactions for RNA: ENST00000515562.1

DDX41-217, Transcript of DEAD-box helicase 41, humanhuman

TSL 1 (best)

Gene DDX41, Length 1,184 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41-217ENST00000515562 EIF2B4Q9UI10 523 aaKnown RBP18.06■□□□□ 0.48
DDX41-217ENST00000515562 ZBTB32Q9Y2Y4 487 aaPredicted RBP18.06■□□□□ 0.48
DDX41-217ENST00000515562 CHD8Q9HCK8 2581 aa18.06■□□□□ 0.48
DDX41-217ENST00000515562 NYNRINQ9P2P1 1898 aaKnown RBP18.05■□□□□ 0.48
DDX41-217ENST00000515562 EDDM13A0A1B0GTR0 161 aa18.05■□□□□ 0.48
DDX41-217ENST00000515562 TARSL2A2RTX5 802 aaKnown RBP18.05■□□□□ 0.48
DDX41-217ENST00000515562 SIN3BO75182 1162 aa18.05■□□□□ 0.48
DDX41-217ENST00000515562 GRAP2O75791 330 aa18.05■□□□□ 0.48
DDX41-217ENST00000515562 CER1O95813 267 aa18.05■□□□□ 0.48
DDX41-217ENST00000515562 CD59P13987 128 aa18.05■□□□□ 0.48
DDX41-217ENST00000515562 AFF3P51826 1226 aaKnown RBP18.05■□□□□ 0.48
DDX41-217ENST00000515562 SULT2A1Q06520 285 aa18.05■□□□□ 0.48
DDX41-217ENST00000515562 DRAP1Q14919 205 aaPredicted RBP18.05■□□□□ 0.48
DDX41-217ENST00000515562 DHX40Q8IX18 779 aaKnown RBP18.05■□□□□ 0.48
DDX41-217ENST00000515562 CCAR2Q8N163 923 aaKnown RBP18.05■□□□□ 0.48
DDX41-217ENST00000515562 TMEM35BQ8NCS4 154 aa18.05■□□□□ 0.48
DDX41-217ENST00000515562 PABPC3Q9H361 631 aaKnown RBP18.05■□□□□ 0.48
DDX41-217ENST00000515562 C6orf106Q9H6K1 298 aaPredicted RBP18.05■□□□□ 0.48
DDX41-217ENST00000515562 NCKAP1Q9Y2A7 1128 aa18.05■□□□□ 0.48
DDX41-217ENST00000515562 FHOD1Q9Y613 1164 aa18.05■□□□□ 0.48
DDX41-217ENST00000515562 CDH5P33151 784 aaPredicted RBP18.04■□□□□ 0.48
DDX41-217ENST00000515562 NOS2P35228 1153 aa18.04■□□□□ 0.48
DDX41-217ENST00000515562 NNMTP40261 264 aa18.04■□□□□ 0.48
DDX41-217ENST00000515562 MATKP42679 507 aa18.04■□□□□ 0.48
DDX41-217ENST00000515562 CTSOP43234 321 aaPredicted RBP18.04■□□□□ 0.48
DDX41-217ENST00000515562 SIM1P81133 766 aaPredicted RBP18.04■□□□□ 0.48
DDX41-217ENST00000515562 NME3Q13232 169 aa18.04■□□□□ 0.48
DDX41-217ENST00000515562 CST6Q15828 149 aa18.04■□□□□ 0.48
DDX41-217ENST00000515562 TCP11X2Q5H9J9 407 aa18.04■□□□□ 0.48
DDX41-217ENST00000515562 KLHDC7AQ5VTJ3 777 aa18.04■□□□□ 0.48
DDX41-217ENST00000515562 DPY19L2P1Q6NXN4 242 aa18.04■□□□□ 0.48
DDX41-217ENST00000515562 C1orf216Q8TAB5 229 aa18.04■□□□□ 0.48
DDX41-217ENST00000515562 RPRD1AQ96P16 312 aaPredicted RBP18.04■□□□□ 0.48
DDX41-217ENST00000515562 PPP1R9BQ96SB3 815 aa18.04■□□□□ 0.48
DDX41-217ENST00000515562 MTG2Q9H4K7 406 aa18.04■□□□□ 0.48
DDX41-217ENST00000515562 OSGEPQ9NPF4 335 aa18.04■□□□□ 0.48
DDX41-217ENST00000515562 PLCB1Q9NQ66 1216 aa18.04■□□□□ 0.48
DDX41-217ENST00000515562 SAMSN1Q9NSI8 373 aaKnown RBP18.04■□□□□ 0.48
DDX41-217ENST00000515562 TMEM51Q9NW97 253 aa18.04■□□□□ 0.48
DDX41-217ENST00000515562 STAP1Q9ULZ2 295 aa18.04■□□□□ 0.48
DDX41-217ENST00000515562 WASF3Q9UPY6 502 aa18.04■□□□□ 0.48
DDX41-217ENST00000515562 MAP1BP46821 2468 aaKnown RBP18.03■□□□□ 0.48
DDX41-217ENST00000515562 SPAARA0A1B0GVQ0 90 aa18.03■□□□□ 0.48
DDX41-217ENST00000515562 M0QYT0 321 aa18.03■□□□□ 0.48
DDX41-217ENST00000515562 LSM8O95777 96 aaKnown RBP18.03■□□□□ 0.48
DDX41-217ENST00000515562 ZNF883P0CG24 379 aa18.03■□□□□ 0.48
DDX41-217ENST00000515562 UCHL3P15374 230 aa18.03■□□□□ 0.48
DDX41-217ENST00000515562 CYP11B1P15538 503 aa18.03■□□□□ 0.48
DDX41-217ENST00000515562 PDGFRAP16234 1089 aa18.03■□□□□ 0.48
DDX41-217ENST00000515562 RDXP35241 583 aaKnown RBP18.03■□□□□ 0.48
DDX41-217ENST00000515562 SCNN1AP37088 669 aa18.03■□□□□ 0.48
DDX41-217ENST00000515562 ELAVL3Q14576 367 aaKnown RBP18.03■□□□□ 0.48
DDX41-217ENST00000515562 TEAD4Q15561 434 aa18.03■□□□□ 0.48
DDX41-217ENST00000515562 C9orf64Q5T6V5 341 aa18.03■□□□□ 0.48
DDX41-217ENST00000515562 FBXL22Q6P050 247 aa18.03■□□□□ 0.48
DDX41-217ENST00000515562 CIR1Q86X95 450 aaPredicted RBP18.03■□□□□ 0.48
DDX41-217ENST00000515562 NAXDQ8IW45 347 aa18.03■□□□□ 0.48
DDX41-217ENST00000515562 APCDD1Q8J025 514 aa18.03■□□□□ 0.48
DDX41-217ENST00000515562 MSANTD4Q8NCY6 345 aa18.03■□□□□ 0.48
DDX41-217ENST00000515562 GANCQ8TET4 914 aa18.03■□□□□ 0.48
DDX41-217ENST00000515562 BIRC7Q96CA5 298 aa18.03■□□□□ 0.48
DDX41-217ENST00000515562 NAA15Q9BXJ9 866 aaKnown RBP18.03■□□□□ 0.48
DDX41-217ENST00000515562 FZD4Q9ULV1 537 aa18.03■□□□□ 0.48
DDX41-217ENST00000515562 PAXBP1Q9Y5B6 917 aa18.03■□□□□ 0.48
DDX41-217ENST00000515562 TTC34A8MYJ7 566 aa18.02■□□□□ 0.48
DDX41-217ENST00000515562 F8VZ95 297 aa18.02■□□□□ 0.48
DDX41-217ENST00000515562 TRIM16O95361 564 aa18.02■□□□□ 0.48
DDX41-217ENST00000515562 CD27P26842 260 aa18.02■□□□□ 0.48
DDX41-217ENST00000515562 GRIA4P48058 902 aa18.02■□□□□ 0.48
DDX41-217ENST00000515562 PLK1P53350 603 aa18.02■□□□□ 0.48
DDX41-217ENST00000515562 CENPCQ03188 943 aa18.02■□□□□ 0.48
DDX41-217ENST00000515562 KCNMA1Q12791 1236 aa18.02■□□□□ 0.48
DDX41-217ENST00000515562 AUHQ13825 339 aaKnown RBP18.02■□□□□ 0.48
DDX41-217ENST00000515562 BRMS1LQ5PSV4 323 aa18.02■□□□□ 0.48
DDX41-217ENST00000515562 CXorf57Q6NSI4 855 aaKnown RBP18.02■□□□□ 0.48
DDX41-217ENST00000515562 LRSAM1Q6UWE0 723 aa18.02■□□□□ 0.48
DDX41-217ENST00000515562 SND1Q7KZF4 910 aaKnown RBP eCLIP18.02■□□□□ 0.48
DDX41-217ENST00000515562 NPY6RQ99463 290 aa18.02■□□□□ 0.48
DDX41-217ENST00000515562 STK33Q9BYT3 514 aa18.02■□□□□ 0.48
DDX41-217ENST00000515562 ADAM33Q9BZ11 813 aa18.02■□□□□ 0.48
DDX41-217ENST00000515562 GAREM1Q9H706 876 aa18.02■□□□□ 0.48
DDX41-217ENST00000515562 LMBRD1Q9NUN5 540 aa18.02■□□□□ 0.48
DDX41-217ENST00000515562 FBXL12Q9NXK8 326 aa18.02■□□□□ 0.48
DDX41-217ENST00000515562 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP18.02■□□□□ 0.48
DDX41-217ENST00000515562 SLCO3A1Q9UIG8 710 aa18.02■□□□□ 0.48
DDX41-217ENST00000515562 VANGL2Q9ULK5 521 aa18.02■□□□□ 0.48
DDX41-217ENST00000515562 HS3ST4Q9Y661 456 aa18.02■□□□□ 0.48
DDX41-217ENST00000515562 NUMA1Q14980 2115 aa18.02■□□□□ 0.47
DDX41-217ENST00000515562 CACNA1BQ00975 2339 aa18.01■□□□□ 0.47
DDX41-217ENST00000515562 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP18.01■□□□□ 0.47
DDX41-217ENST00000515562 MID1O15344 667 aa18.01■□□□□ 0.47
DDX41-217ENST00000515562 PAGE1O75459 146 aa18.01■□□□□ 0.47
DDX41-217ENST00000515562 CLDN11O75508 207 aa18.01■□□□□ 0.47
DDX41-217ENST00000515562 FSBPO95073 299 aa18.01■□□□□ 0.47
DDX41-217ENST00000515562 ADH1BP00325 375 aa18.01■□□□□ 0.47
DDX41-217ENST00000515562 TPM2P07951 284 aa18.01■□□□□ 0.47
DDX41-217ENST00000515562 GABRB2P47870 512 aa18.01■□□□□ 0.47
DDX41-217ENST00000515562 STK19P49842 368 aaPredicted RBP18.01■□□□□ 0.47
DDX41-217ENST00000515562 VASPP50552 380 aaPredicted RBP18.01■□□□□ 0.47
DDX41-217ENST00000515562 ZNF177Q13360 481 aaPredicted RBP18.01■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 99.9 ms