RNA–Protein interactions for RNA: ENST00000512946.5

LIMCH1-217, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,057 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-217ENST00000512946 PRMT5O14744 637 aaPredicted RBP11.43□□□□□ -0.58
LIMCH1-217ENST00000512946 PRKAB2O43741 272 aa11.43□□□□□ -0.58
LIMCH1-217ENST00000512946 METTL18O95568 372 aa11.43□□□□□ -0.58
LIMCH1-217ENST00000512946 LYNP07948 512 aa11.43□□□□□ -0.58
LIMCH1-217ENST00000512946 PGAM1P18669 254 aa11.43□□□□□ -0.58
LIMCH1-217ENST00000512946 SKIV2LQ15477 1246 aaKnown RBP11.43□□□□□ -0.58
LIMCH1-217ENST00000512946 PKN1Q16512 942 aa11.43□□□□□ -0.58
LIMCH1-217ENST00000512946 CIAPIN1Q6FI81 312 aa11.43□□□□□ -0.58
LIMCH1-217ENST00000512946 ZBTB8BQ8NAP8 495 aaPredicted RBP11.43□□□□□ -0.58
LIMCH1-217ENST00000512946 TEFMQ96QE5 360 aaKnown RBP11.43□□□□□ -0.58
LIMCH1-217ENST00000512946 CLCC1Q96S66 551 aa11.43□□□□□ -0.58
LIMCH1-217ENST00000512946 MND1Q9BWT6 205 aa11.43□□□□□ -0.58
LIMCH1-217ENST00000512946 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP11.43□□□□□ -0.58
LIMCH1-217ENST00000512946 VPS51Q9UID3 782 aa11.43□□□□□ -0.58
LIMCH1-217ENST00000512946 INVSQ9Y283 1065 aa11.43□□□□□ -0.58
LIMCH1-217ENST00000512946 GRIP1Q9Y3R0 1128 aa11.43□□□□□ -0.58
LIMCH1-217ENST00000512946 ABCA10Q8WWZ4 1543 aa11.43□□□□□ -0.58
LIMCH1-217ENST00000512946 CPDO75976 1380 aa11.43□□□□□ -0.58
LIMCH1-217ENST00000512946 BBIP1A8MTZ0 92 aa11.43□□□□□ -0.58
LIMCH1-217ENST00000512946 TULP2O00295 520 aa11.43□□□□□ -0.58
LIMCH1-217ENST00000512946 PRKD3O94806 890 aa11.43□□□□□ -0.58
LIMCH1-217ENST00000512946 NOL4O94818 638 aa11.43□□□□□ -0.58
LIMCH1-217ENST00000512946 PRKCBP05771 671 aa11.43□□□□□ -0.58
LIMCH1-217ENST00000512946 YES1P07947 543 aa11.43□□□□□ -0.58
LIMCH1-217ENST00000512946 SNRPB2P08579 225 aaKnown RBP11.43□□□□□ -0.58
LIMCH1-217ENST00000512946 SLC2A4P14672 509 aa11.43□□□□□ -0.58
LIMCH1-217ENST00000512946 HNF4AP41235 474 aa11.43□□□□□ -0.58
LIMCH1-217ENST00000512946 TTLL4Q14679 1199 aa11.43□□□□□ -0.58
LIMCH1-217ENST00000512946 PDK4Q16654 411 aa11.43□□□□□ -0.58
LIMCH1-217ENST00000512946 INSCQ1MX18 579 aa11.43□□□□□ -0.58
LIMCH1-217ENST00000512946 SV2CQ496J9 727 aa11.43□□□□□ -0.58
LIMCH1-217ENST00000512946 PQLC1Q8N2U9 271 aa11.43□□□□□ -0.58
LIMCH1-217ENST00000512946 POMGNT2Q8NAT1 580 aa11.43□□□□□ -0.58
LIMCH1-217ENST00000512946 RDH11Q8TC12 318 aa11.43□□□□□ -0.58
LIMCH1-217ENST00000512946 PYDC1Q8WXC3 89 aa11.43□□□□□ -0.58
LIMCH1-217ENST00000512946 PHF20Q9BVI0 1012 aa11.43□□□□□ -0.58
LIMCH1-217ENST00000512946 SEMA4AQ9H3S1 761 aa11.43□□□□□ -0.58
LIMCH1-217ENST00000512946 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP11.43□□□□□ -0.58
LIMCH1-217ENST00000512946 GABBR1Q9UBS5 961 aa11.43□□□□□ -0.58
LIMCH1-217ENST00000512946 H7C2Y5 167 aa11.43□□□□□ -0.58
LIMCH1-217ENST00000512946 GLP2RO95838 553 aa11.43□□□□□ -0.58
LIMCH1-217ENST00000512946 TOP3BO95985 862 aaKnown RBP11.43□□□□□ -0.58
LIMCH1-217ENST00000512946 HLA-DRAP01903 254 aa11.43□□□□□ -0.58
LIMCH1-217ENST00000512946 PHKG2P15735 406 aa11.43□□□□□ -0.58
LIMCH1-217ENST00000512946 ST3GAL1Q11201 340 aa11.43□□□□□ -0.58
LIMCH1-217ENST00000512946 FAXCQ5TGI0 409 aa11.43□□□□□ -0.58
LIMCH1-217ENST00000512946 FAM131AQ6UXB0 335 aa11.43□□□□□ -0.58
LIMCH1-217ENST00000512946 PLCZ1Q86YW0 608 aa11.43□□□□□ -0.58
LIMCH1-217ENST00000512946 GPRASP2Q96D09 838 aa11.43□□□□□ -0.58
LIMCH1-217ENST00000512946 AIFM2Q9BRQ8 373 aa11.43□□□□□ -0.58
LIMCH1-217ENST00000512946 CDH19Q9H159 772 aa11.43□□□□□ -0.58
LIMCH1-217ENST00000512946 PNPLA7Q6ZV29 1317 aa11.43□□□□□ -0.58
LIMCH1-217ENST00000512946 DCXO43602 365 aa11.43□□□□□ -0.58
LIMCH1-217ENST00000512946 C21orf2O43822 256 aa11.43□□□□□ -0.58
LIMCH1-217ENST00000512946 VCLP18206 1134 aa11.43□□□□□ -0.58
LIMCH1-217ENST00000512946 TMEM132DQ14C87 1099 aa11.43□□□□□ -0.58
LIMCH1-217ENST00000512946 STRIP1Q5VSL9 837 aa11.43□□□□□ -0.58
LIMCH1-217ENST00000512946 IL31Q6EBC2 164 aa11.43□□□□□ -0.58
LIMCH1-217ENST00000512946 PYHIN1Q6K0P9 492 aa11.43□□□□□ -0.58
LIMCH1-217ENST00000512946 C10orf107Q8IVU9 208 aa11.43□□□□□ -0.58
LIMCH1-217ENST00000512946 ZNF655Q8N720 491 aaPredicted RBP11.43□□□□□ -0.58
LIMCH1-217ENST00000512946 B3GALNT2Q8NCR0 500 aa11.43□□□□□ -0.58
LIMCH1-217ENST00000512946 FAR1Q8WVX9 515 aa11.43□□□□□ -0.58
LIMCH1-217ENST00000512946 FCGR1BQ92637 280 aa11.43□□□□□ -0.58
LIMCH1-217ENST00000512946 CRISPLD1Q9H336 500 aa11.43□□□□□ -0.58
LIMCH1-217ENST00000512946 TRHDEQ9UKU6 1024 aa11.43□□□□□ -0.58
LIMCH1-217ENST00000512946 A2MP01023 1474 aa11.43□□□□□ -0.58
LIMCH1-217ENST00000512946 ABCC10Q5T3U5 1492 aa11.43□□□□□ -0.58
LIMCH1-217ENST00000512946 FOXN1O15353 648 aa11.42□□□□□ -0.58
LIMCH1-217ENST00000512946 LRIG2O94898 1065 aa11.42□□□□□ -0.58
LIMCH1-217ENST00000512946 PTPN1P18031 435 aaKnown RBP11.42□□□□□ -0.58
LIMCH1-217ENST00000512946 HOXA13P31271 388 aaPredicted RBP11.42□□□□□ -0.58
LIMCH1-217ENST00000512946 FXR2P51116 673 aaKnown RBP eCLIP11.42□□□□□ -0.58
LIMCH1-217ENST00000512946 ACTR3P61158 418 aa11.42□□□□□ -0.58
LIMCH1-217ENST00000512946 ERVK-24P63145 666 aa11.42□□□□□ -0.58
LIMCH1-217ENST00000512946 FGD3Q5JSP0 725 aa11.42□□□□□ -0.58
LIMCH1-217ENST00000512946 PAGE2Q7Z2X7 111 aa11.42□□□□□ -0.58
LIMCH1-217ENST00000512946 DNAAF5Q86Y56 855 aa11.42□□□□□ -0.58
LIMCH1-217ENST00000512946 ENGASEQ8NFI3 743 aa11.42□□□□□ -0.58
LIMCH1-217ENST00000512946 HELQQ8TDG4 1101 aa11.42□□□□□ -0.58
LIMCH1-217ENST00000512946 RAB2BQ8WUD1 216 aa11.42□□□□□ -0.58
LIMCH1-217ENST00000512946 ADGRE3Q9BY15 652 aa11.42□□□□□ -0.58
LIMCH1-217ENST00000512946 STAU2Q9NUL3 570 aaKnown RBP eCLIP11.42□□□□□ -0.58
LIMCH1-217ENST00000512946 PNMA8BQ9ULN7 279 aaPredicted RBP11.42□□□□□ -0.58
LIMCH1-217ENST00000512946 AGAP1Q9UPQ3 857 aa11.42□□□□□ -0.58
LIMCH1-217ENST00000512946 ERI2A8K979 691 aaKnown RBP11.42□□□□□ -0.58
LIMCH1-217ENST00000512946 PPP1R3GB7ZBB8 358 aa11.42□□□□□ -0.58
LIMCH1-217ENST00000512946 TRAFD1O14545 582 aaPredicted RBP11.42□□□□□ -0.58
LIMCH1-217ENST00000512946 GLI1P08151 1106 aa11.42□□□□□ -0.58
LIMCH1-217ENST00000512946 NFICP08651 508 aa11.42□□□□□ -0.58
LIMCH1-217ENST00000512946 EPB42P16452 691 aa11.42□□□□□ -0.58
LIMCH1-217ENST00000512946 RBM34P42696 430 aaKnown RBP11.42□□□□□ -0.58
LIMCH1-217ENST00000512946 GPAT2Q6NUI2 795 aa11.42□□□□□ -0.58
LIMCH1-217ENST00000512946 XRRA1Q6P2D8 792 aa11.42□□□□□ -0.58
LIMCH1-217ENST00000512946 MPP5Q8N3R9 675 aa11.42□□□□□ -0.58
LIMCH1-217ENST00000512946 FBXO39Q8N4B4 442 aa11.42□□□□□ -0.58
LIMCH1-217ENST00000512946 FNDC5Q8NAU1 212 aa11.42□□□□□ -0.58
LIMCH1-217ENST00000512946 ZNF285Q96NJ3 590 aa11.42□□□□□ -0.58
LIMCH1-217ENST00000512946 PLEKHF1Q96S99 279 aa11.42□□□□□ -0.58
LIMCH1-217ENST00000512946 VAT1Q99536 393 aa11.42□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms