RNA–Protein interactions for RNA: ENST00000485943.1

USP40-216, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 568 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-216ENST00000485943 PHF13Q86YI8 300 aaPredicted RBP8.3□□□□□ -1.08
USP40-216ENST00000485943 MCOLN2Q8IZK6 566 aa8.3□□□□□ -1.08
USP40-216ENST00000485943 CFAP52Q8N1V2 620 aa8.3□□□□□ -1.08
USP40-216ENST00000485943 TXLNBQ8N3L3 684 aa8.3□□□□□ -1.08
USP40-216ENST00000485943 WDTC1Q8N5D0 677 aa8.3□□□□□ -1.08
USP40-216ENST00000485943 ALLCQ8N6M5 410 aa8.3□□□□□ -1.08
USP40-216ENST00000485943 RIN3Q8TB24 985 aa8.3□□□□□ -1.08
USP40-216ENST00000485943 FAM172AQ8WUF8 416 aa8.3□□□□□ -1.08
USP40-216ENST00000485943 HMGB4Q8WW32 186 aa8.3□□□□□ -1.08
USP40-216ENST00000485943 DDX1Q92499 740 aaKnown RBP8.3□□□□□ -1.08
USP40-216ENST00000485943 SYN2Q92777 582 aaPredicted RBP8.3□□□□□ -1.08
USP40-216ENST00000485943 AZIN2Q96A70 460 aa8.3□□□□□ -1.08
USP40-216ENST00000485943 CLDN23Q96B33 292 aa8.3□□□□□ -1.08
USP40-216ENST00000485943 CCDC114Q96M63 670 aa8.3□□□□□ -1.08
USP40-216ENST00000485943 SLC2A13Q96QE2 648 aa8.3□□□□□ -1.08
USP40-216ENST00000485943 HHIPQ96QV1 700 aa8.3□□□□□ -1.08
USP40-216ENST00000485943 TBCBQ99426 244 aa8.3□□□□□ -1.08
USP40-216ENST00000485943 IRX2Q9BZI1 471 aaPredicted RBP8.3□□□□□ -1.08
USP40-216ENST00000485943 FAM86C1Q9NVL1 165 aa8.3□□□□□ -1.08
USP40-216ENST00000485943 ZSCAN32Q9NX65 697 aa8.3□□□□□ -1.08
USP40-216ENST00000485943 MARK1Q9P0L2 795 aa8.3□□□□□ -1.08
USP40-216ENST00000485943 CTTNBP2NLQ9P2B4 639 aa8.3□□□□□ -1.08
USP40-216ENST00000485943 GGA2Q9UJY4 613 aa8.3□□□□□ -1.08
USP40-216ENST00000485943 VPS28Q9UK41 221 aa8.3□□□□□ -1.08
USP40-216ENST00000485943 KMT2EQ8IZD2 1858 aa8.3□□□□□ -1.08
USP40-216ENST00000485943 GOLGA6L7A0A1B0GV03 622 aa8.29□□□□□ -1.08
USP40-216ENST00000485943 A0A1B0GVM2 712 aa8.29□□□□□ -1.08
USP40-216ENST00000485943 TCAF2A6NFQ2 919 aa8.29□□□□□ -1.08
USP40-216ENST00000485943 OTOL1A6NHN0 477 aaPredicted RBP8.29□□□□□ -1.08
USP40-216ENST00000485943 SIGLEC16A6NMB1 481 aa8.29□□□□□ -1.08
USP40-216ENST00000485943 MYO1FO00160 1098 aa8.29□□□□□ -1.08
USP40-216ENST00000485943 AXIN1O15169 862 aa8.29□□□□□ -1.08
USP40-216ENST00000485943 CREB3O43889 395 aa8.29□□□□□ -1.08
USP40-216ENST00000485943 BNIP3LO60238 219 aa8.29□□□□□ -1.08
USP40-216ENST00000485943 LUC7L3O95232 432 aaKnown RBP8.29□□□□□ -1.08
USP40-216ENST00000485943 ADCY5O95622 1261 aa8.29□□□□□ -1.08
USP40-216ENST00000485943 KLKB1P03952 638 aa8.29□□□□□ -1.08
USP40-216ENST00000485943 ASLP04424 464 aa8.29□□□□□ -1.08
USP40-216ENST00000485943 EPHX1P07099 455 aa8.29□□□□□ -1.08
USP40-216ENST00000485943 SP9P0CG40 484 aa8.29□□□□□ -1.08
USP40-216ENST00000485943 UNGP13051 313 aaPredicted RBP8.29□□□□□ -1.08
USP40-216ENST00000485943 OR1E1P30953 314 aa8.29□□□□□ -1.08
USP40-216ENST00000485943 CNR2P34972 360 aa8.29□□□□□ -1.08
USP40-216ENST00000485943 GJC1P36383 396 aa8.29□□□□□ -1.08
USP40-216ENST00000485943 ETFBP38117 255 aa8.29□□□□□ -1.08
USP40-216ENST00000485943 PRKCIP41743 596 aa8.29□□□□□ -1.08
USP40-216ENST00000485943 RPL34P49207 117 aaKnown RBP8.29□□□□□ -1.08
USP40-216ENST00000485943 ADKP55263 362 aaKnown RBP8.29□□□□□ -1.08
USP40-216ENST00000485943 SATB1Q01826 763 aa8.29□□□□□ -1.08
USP40-216ENST00000485943 SULT2A1Q06520 285 aa8.29□□□□□ -1.08
USP40-216ENST00000485943 CCINQ13939 588 aa8.29□□□□□ -1.08
USP40-216ENST00000485943 SIM2Q14190 667 aaPredicted RBP8.29□□□□□ -1.08
USP40-216ENST00000485943 ARID5BQ14865 1188 aa8.29□□□□□ -1.08
USP40-216ENST00000485943 MS4A13Q5J8X5 152 aa8.29□□□□□ -1.08
USP40-216ENST00000485943 MPP7Q5T2T1 576 aa8.29□□□□□ -1.08
USP40-216ENST00000485943 C6orf118Q5T5N4 469 aa8.29□□□□□ -1.08
USP40-216ENST00000485943 PIK3R6Q5UE93 754 aa8.29□□□□□ -1.08
USP40-216ENST00000485943 IL31Q6EBC2 164 aa8.29□□□□□ -1.08
USP40-216ENST00000485943 ALKBH5Q6P6C2 394 aaKnown RBP8.29□□□□□ -1.08
USP40-216ENST00000485943 SYT13Q7L8C5 426 aa8.29□□□□□ -1.08
USP40-216ENST00000485943 BHLHA9Q7RTU4 235 aa8.29□□□□□ -1.08
USP40-216ENST00000485943 APTXQ7Z2E3 356 aaKnown RBP8.29□□□□□ -1.08
USP40-216ENST00000485943 ZNF571Q7Z3V5 609 aaPredicted RBP8.29□□□□□ -1.08
USP40-216ENST00000485943 SLFN11Q7Z7L1 901 aa8.29□□□□□ -1.08
USP40-216ENST00000485943 C11orf74Q86VG3 221 aa8.29□□□□□ -1.08
USP40-216ENST00000485943 LONP2Q86WA8 852 aa8.29□□□□□ -1.08
USP40-216ENST00000485943 C12orf40Q86WS4 652 aa8.29□□□□□ -1.08
USP40-216ENST00000485943 VSTM4Q8IW00 320 aa8.29□□□□□ -1.08
USP40-216ENST00000485943 CAMKK1Q8N5S9 505 aa8.29□□□□□ -1.08
USP40-216ENST00000485943 WBP2Q969T9 261 aa8.29□□□□□ -1.08
USP40-216ENST00000485943 ERLEC1Q96DZ1 483 aa8.29□□□□□ -1.08
USP40-216ENST00000485943 PIWIL1Q96J94 861 aaKnown RBP8.29□□□□□ -1.08
USP40-216ENST00000485943 FCRL2Q96LA5 508 aaPredicted RBP8.29□□□□□ -1.08
USP40-216ENST00000485943 SEMA4AQ9H3S1 761 aa8.29□□□□□ -1.08
USP40-216ENST00000485943 CATSPERBQ9H7T0 1116 aa8.29□□□□□ -1.08
USP40-216ENST00000485943 PIGVQ9NUD9 493 aa8.29□□□□□ -1.08
USP40-216ENST00000485943 SUN2Q9UH99 717 aa8.29□□□□□ -1.08
USP40-216ENST00000485943 LCMT1Q9UIC8 334 aa8.29□□□□□ -1.08
USP40-216ENST00000485943 MMP17Q9ULZ9 603 aa8.29□□□□□ -1.08
USP40-216ENST00000485943 PCDHGA2Q9Y5H1 932 aa8.29□□□□□ -1.08
USP40-216ENST00000485943 MYO18AQ92614 2054 aaKnown RBP8.28□□□□□ -1.08
USP40-216ENST00000485943 CHURC1-FNTBB4DL54 471 aa8.28□□□□□ -1.08
USP40-216ENST00000485943 MFAP3LO75121 409 aa8.28□□□□□ -1.08
USP40-216ENST00000485943 PAGE1O75459 146 aa8.28□□□□□ -1.08
USP40-216ENST00000485943 CLDN11O75508 207 aa8.28□□□□□ -1.08
USP40-216ENST00000485943 RPP40O75818 363 aaKnown RBP8.28□□□□□ -1.08
USP40-216ENST00000485943 GYPCP04921 128 aa8.28□□□□□ -1.08
USP40-216ENST00000485943 PTMAP06454 111 aaKnown RBP8.28□□□□□ -1.08
USP40-216ENST00000485943 H2AFZP0C0S5 128 aa8.28□□□□□ -1.08
USP40-216ENST00000485943 CHRNB2P17787 502 aa8.28□□□□□ -1.08
USP40-216ENST00000485943 RRM1P23921 792 aa8.28□□□□□ -1.08
USP40-216ENST00000485943 FLT3P36888 993 aa8.28□□□□□ -1.08
USP40-216ENST00000485943 EIF4A3P38919 411 aaKnown RBP8.28□□□□□ -1.08
USP40-216ENST00000485943 ARL4AP40617 200 aa8.28□□□□□ -1.08
USP40-216ENST00000485943 SLC19A1P41440 591 aa8.28□□□□□ -1.08
USP40-216ENST00000485943 NOP2P46087 812 aaKnown RBP8.28□□□□□ -1.08
USP40-216ENST00000485943 PXNP49023 591 aaPredicted RBP8.28□□□□□ -1.08
USP40-216ENST00000485943 FNTBP49356 437 aa8.28□□□□□ -1.08
USP40-216ENST00000485943 DNA2P51530 1060 aa8.28□□□□□ -1.08
USP40-216ENST00000485943 CDH4P55283 916 aa8.28□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms