RNA–Protein interactions for RNA: ENST00000468534.1

CCDC88A-210, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 536 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-210ENST00000468534 USP38Q8NB14 1042 aa5.16□□□□□ -1.58
CCDC88A-210ENST00000468534 ZBTB44Q8NCP5 570 aa5.16□□□□□ -1.58
CCDC88A-210ENST00000468534 ZFAND2BQ8WV99 257 aa5.16□□□□□ -1.58
CCDC88A-210ENST00000468534 FAM136AQ96C01 138 aa5.16□□□□□ -1.58
CCDC88A-210ENST00000468534 VPS39Q96JC1 886 aa5.16□□□□□ -1.58
CCDC88A-210ENST00000468534 TMEM237Q96Q45 408 aa5.16□□□□□ -1.58
CCDC88A-210ENST00000468534 OSBPL9Q96SU4 736 aa5.16□□□□□ -1.58
CCDC88A-210ENST00000468534 SH2D3AQ9BRG2 576 aa5.16□□□□□ -1.58
CCDC88A-210ENST00000468534 CRACR2AQ9BSW2 395 aa5.16□□□□□ -1.58
CCDC88A-210ENST00000468534 UTP14AQ9BVJ6 771 aaKnown RBP5.16□□□□□ -1.58
CCDC88A-210ENST00000468534 ACAT2Q9BWD1 397 aa5.16□□□□□ -1.58
CCDC88A-210ENST00000468534 B3GNT5Q9BYG0 378 aa5.16□□□□□ -1.58
CCDC88A-210ENST00000468534 AGXT2Q9BYV1 514 aa5.16□□□□□ -1.58
CCDC88A-210ENST00000468534 PREBQ9HCU5 417 aa5.16□□□□□ -1.58
CCDC88A-210ENST00000468534 MAGED2Q9UNF1 606 aaPredicted RBP5.16□□□□□ -1.58
CCDC88A-210ENST00000468534 CFAP20Q9Y6A4 193 aaKnown RBP5.16□□□□□ -1.58
CCDC88A-210ENST00000468534 ZNF804BA4D1E1 1349 aa5.16□□□□□ -1.58
CCDC88A-210ENST00000468534 KIF16BQ96L93 1317 aa5.16□□□□□ -1.58
CCDC88A-210ENST00000468534 PASKQ96RG2 1323 aa5.16□□□□□ -1.58
CCDC88A-210ENST00000468534 AKNAQ7Z591 1439 aa5.15□□□□□ -1.58
CCDC88A-210ENST00000468534 CCDC169A6NNP5 214 aa5.15□□□□□ -1.59
CCDC88A-210ENST00000468534 RHPN2P1A8MT19 583 aa5.15□□□□□ -1.59
CCDC88A-210ENST00000468534 NT5C1B-RDH14C9J2C7 533 aa5.15□□□□□ -1.59
CCDC88A-210ENST00000468534 DDX39AO00148 427 aaKnown RBP5.15□□□□□ -1.59
CCDC88A-210ENST00000468534 PPM1DO15297 605 aa5.15□□□□□ -1.59
CCDC88A-210ENST00000468534 POLR3GO15318 223 aaPredicted RBP5.15□□□□□ -1.59
CCDC88A-210ENST00000468534 FFAR2O15552 330 aa5.15□□□□□ -1.59
CCDC88A-210ENST00000468534 FMO6PO60774 539 aa5.15□□□□□ -1.59
CCDC88A-210ENST00000468534 PTP4A3O75365 173 aa5.15□□□□□ -1.59
CCDC88A-210ENST00000468534 STAMBPO95630 424 aa5.15□□□□□ -1.59
CCDC88A-210ENST00000468534 KELP23276 732 aa5.15□□□□□ -1.59
CCDC88A-210ENST00000468534 EPHB2P29323 1055 aa5.15□□□□□ -1.59
CCDC88A-210ENST00000468534 ALDH1B1P30837 517 aa5.15□□□□□ -1.59
CCDC88A-210ENST00000468534 POLD2P49005 469 aa5.15□□□□□ -1.59
CCDC88A-210ENST00000468534 GPC3P51654 580 aa5.15□□□□□ -1.59
CCDC88A-210ENST00000468534 CACNB3P54284 484 aa5.15□□□□□ -1.59
CCDC88A-210ENST00000468534 SLC26A5P58743 744 aa5.15□□□□□ -1.59
CCDC88A-210ENST00000468534 RBP5P82980 135 aa5.15□□□□□ -1.59
CCDC88A-210ENST00000468534 DSC2Q02487 901 aa5.15□□□□□ -1.59
CCDC88A-210ENST00000468534 TLE2Q04725 743 aa5.15□□□□□ -1.59
CCDC88A-210ENST00000468534 FOXO1Q12778 655 aa5.15□□□□□ -1.59
CCDC88A-210ENST00000468534 KLF9Q13886 244 aaPredicted RBP5.15□□□□□ -1.59
CCDC88A-210ENST00000468534 HABP2Q14520 560 aaPredicted RBP5.15□□□□□ -1.59
CCDC88A-210ENST00000468534 STARD3Q14849 445 aa5.15□□□□□ -1.59
CCDC88A-210ENST00000468534 ETFDHQ16134 617 aa5.15□□□□□ -1.59
CCDC88A-210ENST00000468534 ZNF674Q2M3X9 581 aa5.15□□□□□ -1.59
CCDC88A-210ENST00000468534 SUPT20HL1Q3ZLR7 823 aa5.15□□□□□ -1.59
CCDC88A-210ENST00000468534 JMJD6Q6NYC1 403 aaPredicted RBP5.15□□□□□ -1.59
CCDC88A-210ENST00000468534 PACS1Q6VY07 963 aa5.15□□□□□ -1.59
CCDC88A-210ENST00000468534 ZNF551Q7Z340 670 aaPredicted RBP5.15□□□□□ -1.59
CCDC88A-210ENST00000468534 SYTL1Q8IYJ3 562 aa5.15□□□□□ -1.59
CCDC88A-210ENST00000468534 GRAMD1CQ8IYS0 662 aa5.15□□□□□ -1.59
CCDC88A-210ENST00000468534 GALNT15Q8N3T1 639 aa5.15□□□□□ -1.59
CCDC88A-210ENST00000468534 CCDC33Q8N5R6 958 aa5.15□□□□□ -1.59
CCDC88A-210ENST00000468534 Q8N9P0 234 aaPredicted RBP5.15□□□□□ -1.59
CCDC88A-210ENST00000468534 PLBD2Q8NHP8 589 aa5.15□□□□□ -1.59
CCDC88A-210ENST00000468534 CTCFLQ8NI51 663 aaPredicted RBP5.15□□□□□ -1.59
CCDC88A-210ENST00000468534 GDAP1Q8TB36 358 aa5.15□□□□□ -1.59
CCDC88A-210ENST00000468534 KLHDC4Q8TBB5 520 aa5.15□□□□□ -1.59
CCDC88A-210ENST00000468534 CREB3L4Q8TEY5 395 aa5.15□□□□□ -1.59
CCDC88A-210ENST00000468534 HERVK_113Q902F9 699 aa5.15□□□□□ -1.59
CCDC88A-210ENST00000468534 TNPO1Q92973 898 aaKnown RBP5.15□□□□□ -1.59
CCDC88A-210ENST00000468534 COG3Q96JB2 828 aa5.15□□□□□ -1.59
CCDC88A-210ENST00000468534 MAELQ96JY0 434 aaKnown RBP5.15□□□□□ -1.59
CCDC88A-210ENST00000468534 CCDC43Q96MW1 224 aaKnown RBP5.15□□□□□ -1.59
CCDC88A-210ENST00000468534 FNBP1Q96RU3 617 aa5.15□□□□□ -1.59
CCDC88A-210ENST00000468534 ZPBPQ9BS86 351 aa5.15□□□□□ -1.59
CCDC88A-210ENST00000468534 HGH1Q9BTY7 390 aa5.15□□□□□ -1.59
CCDC88A-210ENST00000468534 MMTAG2Q9BU76 263 aaKnown RBP5.15□□□□□ -1.59
CCDC88A-210ENST00000468534 SORBS1Q9BX66 1292 aaKnown RBP5.15□□□□□ -1.59
CCDC88A-210ENST00000468534 UNKQ9C0B0 810 aaKnown RBP5.15□□□□□ -1.59
CCDC88A-210ENST00000468534 PDE7BQ9NP56 450 aa5.15□□□□□ -1.59
CCDC88A-210ENST00000468534 NRIP3Q9NQ35 241 aa5.15□□□□□ -1.59
CCDC88A-210ENST00000468534 ARHGEF3Q9NR81 526 aa5.15□□□□□ -1.59
CCDC88A-210ENST00000468534 KRT84Q9NSB2 600 aa5.15□□□□□ -1.59
CCDC88A-210ENST00000468534 SERTAD4Q9NUC0 356 aa5.15□□□□□ -1.59
CCDC88A-210ENST00000468534 SIDT1Q9NXL6 827 aaKnown RBP5.15□□□□□ -1.59
CCDC88A-210ENST00000468534 ADD3Q9UEY8 706 aaKnown RBP5.15□□□□□ -1.59
CCDC88A-210ENST00000468534 ITGB1BP2Q9UKP3 347 aa5.15□□□□□ -1.59
CCDC88A-210ENST00000468534 CAB39Q9Y376 341 aaPredicted RBP5.15□□□□□ -1.59
CCDC88A-210ENST00000468534 JRKLQ9Y4A0 524 aa5.15□□□□□ -1.59
CCDC88A-210ENST00000468534 PCDHA3Q9Y5H8 950 aa5.15□□□□□ -1.59
CCDC88A-210ENST00000468534 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP5.15□□□□□ -1.59
CCDC88A-210ENST00000468534 GIMAP1-GIMAP5A0A087WTJ2 511 aa5.14□□□□□ -1.59
CCDC88A-210ENST00000468534 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa5.14□□□□□ -1.59
CCDC88A-210ENST00000468534 HNRNPCL2B2RXH8 293 aa5.14□□□□□ -1.59
CCDC88A-210ENST00000468534 PROB1E7EW31 1015 aa5.14□□□□□ -1.59
CCDC88A-210ENST00000468534 M0QYG6 137 aa5.14□□□□□ -1.59
CCDC88A-210ENST00000468534 RIPK2O43353 540 aa5.14□□□□□ -1.59
CCDC88A-210ENST00000468534 HNRNPCL1O60812 293 aaKnown RBP5.14□□□□□ -1.59
CCDC88A-210ENST00000468534 NXPH3O95157 252 aa5.14□□□□□ -1.59
CCDC88A-210ENST00000468534 CHEK2O96017 543 aa5.14□□□□□ -1.59
CCDC88A-210ENST00000468534 CYP1A2P05177 515 aa5.14□□□□□ -1.59
CCDC88A-210ENST00000468534 CYP2D6P10635 497 aa5.14□□□□□ -1.59
CCDC88A-210ENST00000468534 TOP1P11387 765 aaKnown RBP5.14□□□□□ -1.59
CCDC88A-210ENST00000468534 TNNT1P13805 278 aa5.14□□□□□ -1.59
CCDC88A-210ENST00000468534 JUPP14923 745 aa5.14□□□□□ -1.59
CCDC88A-210ENST00000468534 TMEM11P17152 192 aa5.14□□□□□ -1.59
CCDC88A-210ENST00000468534 HLA-DPA1P20036 260 aa5.14□□□□□ -1.59
CCDC88A-210ENST00000468534 PCSK6P29122 969 aa5.14□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms