RNA–Protein interactions for RNA: ENST00000458268.5

USP39-209, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 4

Gene USP39, Length 751 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-209ENST00000458268 ACADMP11310 421 aa19.26■□□□□ 0.67
USP39-209ENST00000458268 RRM1P23921 792 aa19.26■□□□□ 0.67
USP39-209ENST00000458268 MZF1P28698 734 aaPredicted RBP19.26■□□□□ 0.67
USP39-209ENST00000458268 RFC1P35251 1148 aaPredicted RBP19.26■□□□□ 0.67
USP39-209ENST00000458268 C1QBPQ07021 282 aaKnown RBP19.26■□□□□ 0.67
USP39-209ENST00000458268 CCDC14Q49A88 953 aa19.26■□□□□ 0.67
USP39-209ENST00000458268 SCYL2Q6P3W7 929 aa19.26■□□□□ 0.67
USP39-209ENST00000458268 LPCAT2Q7L5N7 544 aa19.26■□□□□ 0.67
USP39-209ENST00000458268 ZNF571Q7Z3V5 609 aaPredicted RBP19.26■□□□□ 0.67
USP39-209ENST00000458268 TFAP2DQ7Z6R9 452 aa19.26■□□□□ 0.67
USP39-209ENST00000458268 FAM124AQ86V42 546 aa19.26■□□□□ 0.67
USP39-209ENST00000458268 TMPRSS6Q8IU80 811 aa19.26■□□□□ 0.67
USP39-209ENST00000458268 C3orf20Q8ND61 904 aa19.26■□□□□ 0.67
USP39-209ENST00000458268 OLIG1Q8TAK6 271 aa19.26■□□□□ 0.67
USP39-209ENST00000458268 FAM172AQ8WUF8 416 aa19.26■□□□□ 0.67
USP39-209ENST00000458268 PRCCQ92733 491 aaPredicted RBP19.26■□□□□ 0.67
USP39-209ENST00000458268 NT5C3BQ969T7 300 aa19.26■□□□□ 0.67
USP39-209ENST00000458268 SIPA1Q96FS4 1042 aa19.26■□□□□ 0.67
USP39-209ENST00000458268 RPL10LQ96L21 214 aaKnown RBP19.26■□□□□ 0.67
USP39-209ENST00000458268 NUP58Q9BVL2 599 aa19.26■□□□□ 0.67
USP39-209ENST00000458268 TTYH3Q9C0H2 523 aa19.26■□□□□ 0.67
USP39-209ENST00000458268 MKRN2Q9H000 416 aaKnown RBP19.26■□□□□ 0.67
USP39-209ENST00000458268 MUC3BQ9H195 1237 aa19.26■□□□□ 0.67
USP39-209ENST00000458268 SEMA4GQ9NTN9 838 aa19.26■□□□□ 0.67
USP39-209ENST00000458268 MPP6Q9NZW5 540 aa19.26■□□□□ 0.67
USP39-209ENST00000458268 MBD1Q9UIS9 605 aaPredicted RBP19.26■□□□□ 0.67
USP39-209ENST00000458268 PLXND1Q9Y4D7 1925 aa19.25■□□□□ 0.67
USP39-209ENST00000458268 GVINP1Q7Z2Y8 2422 aa19.25■□□□□ 0.67
USP39-209ENST00000458268 C2CD4BA6NLJ0 364 aa19.25■□□□□ 0.67
USP39-209ENST00000458268 I6L893 689 aaPredicted RBP19.25■□□□□ 0.67
USP39-209ENST00000458268 NDUFS2O75306 463 aa19.25■□□□□ 0.67
USP39-209ENST00000458268 MPLP40238 635 aa19.25■□□□□ 0.67
USP39-209ENST00000458268 STK19P49842 368 aaPredicted RBP19.25■□□□□ 0.67
USP39-209ENST00000458268 MTA1Q13330 715 aa19.25■□□□□ 0.67
USP39-209ENST00000458268 SF3A2Q15428 464 aaKnown RBP19.25■□□□□ 0.67
USP39-209ENST00000458268 PTPRNQ16849 979 aa19.25■□□□□ 0.67
USP39-209ENST00000458268 MAP7D1Q3KQU3 841 aa19.25■□□□□ 0.67
USP39-209ENST00000458268 PLEKHG6Q3KR16 790 aa19.25■□□□□ 0.67
USP39-209ENST00000458268 ARL13BQ3SXY8 428 aa19.25■□□□□ 0.67
USP39-209ENST00000458268 PMS2CLQ68D20 193 aa19.25■□□□□ 0.67
USP39-209ENST00000458268 RNF43Q68DV7 783 aa19.25■□□□□ 0.67
USP39-209ENST00000458268 WDR59Q6PJI9 974 aa19.25■□□□□ 0.67
USP39-209ENST00000458268 CYP2U1Q7Z449 544 aa19.25■□□□□ 0.67
USP39-209ENST00000458268 KIAA0907Q7Z7F0 614 aaPredicted RBP19.25■□□□□ 0.67
USP39-209ENST00000458268 C11orf74Q86VG3 221 aa19.25■□□□□ 0.67
USP39-209ENST00000458268 MCOLN2Q8IZK6 566 aa19.25■□□□□ 0.67
USP39-209ENST00000458268 C12orf50Q8NA57 414 aaPredicted RBP19.25■□□□□ 0.67
USP39-209ENST00000458268 PGAP3Q96FM1 320 aaPredicted RBP19.25■□□□□ 0.67
USP39-209ENST00000458268 VPS28Q9UK41 221 aa19.25■□□□□ 0.67
USP39-209ENST00000458268 ERVW-1Q9UQF0 538 aa19.25■□□□□ 0.67
USP39-209ENST00000458268 NYNRINQ9P2P1 1898 aaKnown RBP19.24■□□□□ 0.67
USP39-209ENST00000458268 E9PAM4 449 aa19.24■□□□□ 0.67
USP39-209ENST00000458268 CCP110O43303 1012 aa19.24■□□□□ 0.67
USP39-209ENST00000458268 ASLP04424 464 aa19.24■□□□□ 0.67
USP39-209ENST00000458268 RHOCP08134 193 aa19.24■□□□□ 0.67
USP39-209ENST00000458268 AASDHQ4L235 1098 aaPredicted RBP19.24■□□□□ 0.67
USP39-209ENST00000458268 ALFQ53S48 1182 aa19.24■□□□□ 0.67
USP39-209ENST00000458268 PIGKQ92643 395 aa19.24■□□□□ 0.67
USP39-209ENST00000458268 ZNF653Q96CK0 615 aa19.24■□□□□ 0.67
USP39-209ENST00000458268 ZC3H10Q96K80 434 aaKnown RBP19.24■□□□□ 0.67
USP39-209ENST00000458268 LMLNQ96KR4 655 aa19.24■□□□□ 0.67
USP39-209ENST00000458268 CD248Q9HCU0 757 aa19.24■□□□□ 0.67
USP39-209ENST00000458268 AIPL1Q9NZN9 384 aa19.24■□□□□ 0.67
USP39-209ENST00000458268 MYO1AQ9UBC5 1043 aa19.24■□□□□ 0.67
USP39-209ENST00000458268 IGHV1OR15-9A0A0B4J2B8 117 aa19.23■□□□□ 0.67
USP39-209ENST00000458268 SIGLEC16A6NMB1 481 aa19.23■□□□□ 0.67
USP39-209ENST00000458268 TTC34A8MYJ7 566 aa19.23■□□□□ 0.67
USP39-209ENST00000458268 CBFA2T2O43439 604 aa19.23■□□□□ 0.67
USP39-209ENST00000458268 BNIP3LO60238 219 aa19.23■□□□□ 0.67
USP39-209ENST00000458268 ZNF217O75362 1048 aa19.23■□□□□ 0.67
USP39-209ENST00000458268 CLDN11O75508 207 aa19.23■□□□□ 0.67
USP39-209ENST00000458268 PBX1P40424 430 aa19.23■□□□□ 0.67
USP39-209ENST00000458268 PTPN9P43378 593 aa19.23■□□□□ 0.67
USP39-209ENST00000458268 CDH4P55283 916 aa19.23■□□□□ 0.67
USP39-209ENST00000458268 RPL7AP62424 266 aaKnown RBP19.23■□□□□ 0.67
USP39-209ENST00000458268 ECT2LQ008S8 904 aa19.23■□□□□ 0.67
USP39-209ENST00000458268 ENPP2Q13822 863 aa19.23■□□□□ 0.67
USP39-209ENST00000458268 ACCSLQ4AC99 568 aa19.23■□□□□ 0.67
USP39-209ENST00000458268 TCEAL6Q6IPX3 200 aa19.23■□□□□ 0.67
USP39-209ENST00000458268 CXorf57Q6NSI4 855 aaKnown RBP19.23■□□□□ 0.67
USP39-209ENST00000458268 RWDD4Q6NW29 188 aaKnown RBP19.23■□□□□ 0.67
USP39-209ENST00000458268 GPR161Q8N6U8 529 aaKnown RBP19.23■□□□□ 0.67
USP39-209ENST00000458268 CCDC185Q8N715 623 aa19.23■□□□□ 0.67
USP39-209ENST00000458268 OR52K2Q8NGK3 314 aa19.23■□□□□ 0.67
USP39-209ENST00000458268 OR2T3Q8NH03 318 aa19.23■□□□□ 0.67
USP39-209ENST00000458268 GANCQ8TET4 914 aa19.23■□□□□ 0.67
USP39-209ENST00000458268 TCEAL3Q969E4 200 aa19.23■□□□□ 0.67
USP39-209ENST00000458268 TTC17Q96AE7 1141 aa19.23■□□□□ 0.67
USP39-209ENST00000458268 EDEM3Q9BZQ6 932 aa19.23■□□□□ 0.67
USP39-209ENST00000458268 TMEM245Q9H330 911 aa19.23■□□□□ 0.67
USP39-209ENST00000458268 SUN2Q9UH99 717 aa19.23■□□□□ 0.67
USP39-209ENST00000458268 SLC25A13Q9UJS0 675 aa19.23■□□□□ 0.67
USP39-209ENST00000458268 LUC7L2Q9Y383 392 aaKnown RBP19.23■□□□□ 0.67
USP39-209ENST00000458268 DDX3XO00571 662 aaKnown RBP eCLIP19.22■□□□□ 0.679e-13■■■■□ 21.9
USP39-209ENST00000458268 AP5Z1O43299 807 aa19.22■□□□□ 0.67
USP39-209ENST00000458268 DESP17661 470 aa19.22■□□□□ 0.67
USP39-209ENST00000458268 CASP14P31944 242 aa19.22■□□□□ 0.67
USP39-209ENST00000458268 NNMTP40261 264 aa19.22■□□□□ 0.67
USP39-209ENST00000458268 PTGER3P43115 390 aa19.22■□□□□ 0.67
USP39-209ENST00000458268 COPAP53621 1224 aa19.22■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms