RNA–Protein interactions for RNA: ENST00000448833.5

VPS41-208, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 1 (best)

Gene VPS41, Length 711 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-208ENST00000448833 CYB5D2Q8WUJ1 264 aa7.32□□□□□ -1.24
VPS41-208ENST00000448833 ADAMTS14Q8WXS8 1223 aa7.32□□□□□ -1.24
VPS41-208ENST00000448833 SNX19Q92543 992 aa7.32□□□□□ -1.24
VPS41-208ENST00000448833 RNF34Q969K3 372 aa7.32□□□□□ -1.24
VPS41-208ENST00000448833 IGSF8Q969P0 613 aa7.32□□□□□ -1.24
VPS41-208ENST00000448833 ERLEC1Q96DZ1 483 aa7.32□□□□□ -1.24
VPS41-208ENST00000448833 SLC39A13Q96H72 371 aa7.32□□□□□ -1.24
VPS41-208ENST00000448833 FCRL2Q96LA5 508 aaPredicted RBP7.32□□□□□ -1.24
VPS41-208ENST00000448833 ACE2Q9BYF1 805 aaPredicted RBP7.32□□□□□ -1.24
VPS41-208ENST00000448833 KDM4CQ9H3R0 1056 aa7.32□□□□□ -1.24
VPS41-208ENST00000448833 ASNSD1Q9NWL6 643 aa7.32□□□□□ -1.24
VPS41-208ENST00000448833 FBXL12Q9NXK8 326 aa7.32□□□□□ -1.24
VPS41-208ENST00000448833 KIAA1468Q9P260 1216 aa7.32□□□□□ -1.24
VPS41-208ENST00000448833 APEX2Q9UBZ4 518 aa7.32□□□□□ -1.24
VPS41-208ENST00000448833 DACH1Q9UI36 760 aa7.32□□□□□ -1.24
VPS41-208ENST00000448833 ZMIZ1Q9ULJ6 1067 aa7.32□□□□□ -1.24
VPS41-208ENST00000448833 ERVW-1Q9UQF0 538 aa7.32□□□□□ -1.24
VPS41-208ENST00000448833 NAALADL1Q9UQQ1 740 aa7.32□□□□□ -1.24
VPS41-208ENST00000448833 CEP295Q9C0D2 2601 aa7.32□□□□□ -1.24
VPS41-208ENST00000448833 MUC22E2RYF6 1773 aaPredicted RBP7.32□□□□□ -1.24
VPS41-208ENST00000448833 CABIN1Q9Y6J0 2220 aa7.32□□□□□ -1.24
VPS41-208ENST00000448833 ITIH6Q6UXX5 1313 aa7.31□□□□□ -1.24
VPS41-208ENST00000448833 GOLGA6L7A0A1B0GV03 622 aa7.31□□□□□ -1.24
VPS41-208ENST00000448833 A0A1B0GVM2 712 aa7.31□□□□□ -1.24
VPS41-208ENST00000448833 TCAF2A6NFQ2 919 aa7.31□□□□□ -1.24
VPS41-208ENST00000448833 C1QTNF9BB2RNN3 333 aa7.31□□□□□ -1.24
VPS41-208ENST00000448833 BIN1O00499 593 aa7.31□□□□□ -1.24
VPS41-208ENST00000448833 VILLO15195 856 aa7.31□□□□□ -1.24
VPS41-208ENST00000448833 HYAL3O43820 417 aaPredicted RBP7.31□□□□□ -1.24
VPS41-208ENST00000448833 PCDHGA12O60330 932 aa7.31□□□□□ -1.24
VPS41-208ENST00000448833 FSBPO95073 299 aa7.31□□□□□ -1.24
VPS41-208ENST00000448833 F9P00740 461 aa7.31□□□□□ -1.24
VPS41-208ENST00000448833 FYNP06241 537 aa7.31□□□□□ -1.24
VPS41-208ENST00000448833 C1QTNF9P0C862 333 aa7.31□□□□□ -1.24
VPS41-208ENST00000448833 HLA-EP13747 358 aa7.31□□□□□ -1.24
VPS41-208ENST00000448833 GOT1P17174 413 aa7.31□□□□□ -1.24
VPS41-208ENST00000448833 BMP6P22004 513 aa7.31□□□□□ -1.24
VPS41-208ENST00000448833 SLC8A1P32418 973 aa7.31□□□□□ -1.24
VPS41-208ENST00000448833 CD70P32970 193 aa7.31□□□□□ -1.24
VPS41-208ENST00000448833 GRK6P43250 576 aa7.31□□□□□ -1.24
VPS41-208ENST00000448833 MTIF2P46199 727 aaKnown RBP7.31□□□□□ -1.24
VPS41-208ENST00000448833 CSNK1EP49674 416 aaKnown RBP7.31□□□□□ -1.24
VPS41-208ENST00000448833 CCR5P51681 352 aa7.31□□□□□ -1.24
VPS41-208ENST00000448833 PLK1P53350 603 aa7.31□□□□□ -1.24
VPS41-208ENST00000448833 STX17P56962 302 aa7.31□□□□□ -1.24
VPS41-208ENST00000448833 C21orf59P57076 290 aa7.31□□□□□ -1.24
VPS41-208ENST00000448833 RPS24P62847 133 aaKnown RBP7.31□□□□□ -1.24
VPS41-208ENST00000448833 ELAVL3Q14576 367 aaKnown RBP7.31□□□□□ -1.24
VPS41-208ENST00000448833 CST6Q15828 149 aa7.31□□□□□ -1.24
VPS41-208ENST00000448833 DCAF6Q58WW2 860 aa7.31□□□□□ -1.24
VPS41-208ENST00000448833 CT47A1Q5JQC4 288 aaPredicted RBP7.31□□□□□ -1.24
VPS41-208ENST00000448833 PITRM1Q5JRX3 1037 aa7.31□□□□□ -1.24
VPS41-208ENST00000448833 FAM46CQ5VWP2 391 aa7.31□□□□□ -1.24
VPS41-208ENST00000448833 KIAA0895LQ68EN5 471 aa7.31□□□□□ -1.24
VPS41-208ENST00000448833 C11orf57Q6ZUT1 292 aaPredicted RBP7.31□□□□□ -1.24
VPS41-208ENST00000448833 ARHGEF19Q8IW93 802 aa7.31□□□□□ -1.24
VPS41-208ENST00000448833 LGI2Q8N0V4 545 aa7.31□□□□□ -1.24
VPS41-208ENST00000448833 MSANTD4Q8NCY6 345 aa7.31□□□□□ -1.24
VPS41-208ENST00000448833 C1orf131Q8NDD1 294 aaKnown RBP7.31□□□□□ -1.24
VPS41-208ENST00000448833 OR2T34Q8NGX1 318 aa7.31□□□□□ -1.24
VPS41-208ENST00000448833 CLEC4CQ8WTT0 213 aa7.31□□□□□ -1.24
VPS41-208ENST00000448833 GATA6Q92908 595 aa7.31□□□□□ -1.24
VPS41-208ENST00000448833 BIRC7Q96CA5 298 aa7.31□□□□□ -1.24
VPS41-208ENST00000448833 P2RY11Q96G91 374 aa7.31□□□□□ -1.24
VPS41-208ENST00000448833 PPP1R13BQ96KQ4 1090 aa7.31□□□□□ -1.24
VPS41-208ENST00000448833 CCDC114Q96M63 670 aa7.31□□□□□ -1.24
VPS41-208ENST00000448833 KREMEN1Q96MU8 473 aa7.31□□□□□ -1.24
VPS41-208ENST00000448833 ZSWIM1Q9BR11 485 aa7.31□□□□□ -1.24
VPS41-208ENST00000448833 PABPC3Q9H361 631 aaKnown RBP7.31□□□□□ -1.24
VPS41-208ENST00000448833 C6orf106Q9H6K1 298 aaPredicted RBP7.31□□□□□ -1.24
VPS41-208ENST00000448833 SYNCQ9H7C4 482 aa7.31□□□□□ -1.24
VPS41-208ENST00000448833 FAM204AQ9H8W3 233 aa7.31□□□□□ -1.24
VPS41-208ENST00000448833 TM9SF3Q9HD45 589 aa7.31□□□□□ -1.24
VPS41-208ENST00000448833 FSCN3Q9NQT6 498 aa7.31□□□□□ -1.24
VPS41-208ENST00000448833 ADAMTS1Q9UHI8 967 aa7.31□□□□□ -1.24
VPS41-208ENST00000448833 SLC25A13Q9UJS0 675 aa7.31□□□□□ -1.24
VPS41-208ENST00000448833 PCOLCE2Q9UKZ9 415 aa7.31□□□□□ -1.24
VPS41-208ENST00000448833 PCDHGC3Q9UN70 934 aa7.31□□□□□ -1.24
VPS41-208ENST00000448833 USP24Q9UPU5 2620 aa7.31□□□□□ -1.24
VPS41-208ENST00000448833 ANKRD6Q9Y2G4 727 aa7.31□□□□□ -1.24
VPS41-208ENST00000448833 PLXNA2O75051 1894 aa7.3□□□□□ -1.24
VPS41-208ENST00000448833 ZZEF1O43149 2961 aa7.3□□□□□ -1.24
VPS41-208ENST00000448833 AKAP13Q12802 2813 aa7.3□□□□□ -1.24
VPS41-208ENST00000448833 DOCK4Q8N1I0 1966 aa7.3□□□□□ -1.24
VPS41-208ENST00000448833 COL5A1P20908 1838 aaPredicted RBP7.3□□□□□ -1.24
VPS41-208ENST00000448833 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP7.3□□□□□ -1.24
VPS41-208ENST00000448833 A0A1B0GVT2 93 aa7.3□□□□□ -1.24
VPS41-208ENST00000448833 A0A1W2PPC4 97 aa7.3□□□□□ -1.24
VPS41-208ENST00000448833 E5RJQ4 531 aa7.3□□□□□ -1.24
VPS41-208ENST00000448833 ALOX15BO15296 676 aa7.3□□□□□ -1.24
VPS41-208ENST00000448833 SLC7A4O43246 635 aa7.3□□□□□ -1.24
VPS41-208ENST00000448833 PAPSS1O43252 624 aaPredicted RBP7.3□□□□□ -1.24
VPS41-208ENST00000448833 TNFSF14O43557 240 aa7.3□□□□□ -1.24
VPS41-208ENST00000448833 CBFA2T3O75081 653 aa7.3□□□□□ -1.24
VPS41-208ENST00000448833 SIN3BO75182 1162 aa7.3□□□□□ -1.24
VPS41-208ENST00000448833 CLDN11O75508 207 aa7.3□□□□□ -1.24
VPS41-208ENST00000448833 RNASEH2AO75792 299 aaKnown RBP7.3□□□□□ -1.24
VPS41-208ENST00000448833 MOCS2O96007 188 aaPredicted RBP7.3□□□□□ -1.24
VPS41-208ENST00000448833 IGLV3-25P01717 112 aa7.3□□□□□ -1.24
VPS41-208ENST00000448833 C1SP09871 688 aa7.3□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms