RNA–Protein interactions for RNA: ENST00000445503.5

MSH6-204, Transcript of mutS homolog 6, humanhuman

TSL 1 (best)

Gene MSH6, Length 4,158 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-204ENST00000445503 SEMA6AQ9H2E6 1030 aa12.15□□□□□ -0.46
MSH6-204ENST00000445503 PDZD7Q9H5P4 517 aa12.15□□□□□ -0.46
MSH6-204ENST00000445503 COPG2Q9UBF2 871 aa12.15□□□□□ -0.46
MSH6-204ENST00000445503 CCDC189A1A4V9 331 aa12.15□□□□□ -0.46
MSH6-204ENST00000445503 H3BRB1 525 aa12.15□□□□□ -0.46
MSH6-204ENST00000445503 NR2C2P49116 596 aa12.15□□□□□ -0.46
MSH6-204ENST00000445503 PLK1P53350 603 aa12.15□□□□□ -0.46
MSH6-204ENST00000445503 KIF19Q2TAC6 998 aa12.15□□□□□ -0.46
MSH6-204ENST00000445503 OR6P1Q8NGX9 317 aa12.15□□□□□ -0.46
MSH6-204ENST00000445503 FAM136AQ96C01 138 aa12.15□□□□□ -0.46
MSH6-204ENST00000445503 LENG8Q96PV6 779 aaPredicted RBP12.15□□□□□ -0.46
MSH6-204ENST00000445503 PRPF18Q99633 342 aaKnown RBP12.15□□□□□ -0.46
MSH6-204ENST00000445503 DHRS4Q9BTZ2 278 aa12.15□□□□□ -0.46
MSH6-204ENST00000445503 TUT1Q9H6E5 874 aaKnown RBP12.15□□□□□ -0.46
MSH6-204ENST00000445503 FAF1Q9UNN5 650 aaPredicted RBP12.15□□□□□ -0.46
MSH6-204ENST00000445503 TCRBV5S1A1TA0A578 114 aa12.15□□□□□ -0.47
MSH6-204ENST00000445503 FESP07332 822 aa12.15□□□□□ -0.47
MSH6-204ENST00000445503 ALDH1A3P47895 512 aa12.15□□□□□ -0.47
MSH6-204ENST00000445503 CACNB2Q08289 660 aaPredicted RBP12.15□□□□□ -0.47
MSH6-204ENST00000445503 ANKRD20A4Q4UJ75 823 aa12.15□□□□□ -0.47
MSH6-204ENST00000445503 TEDDM1Q5T9Z0 273 aa12.15□□□□□ -0.47
MSH6-204ENST00000445503 LBX2Q6XYB7 198 aa12.15□□□□□ -0.47
MSH6-204ENST00000445503 PIGZQ86VD9 579 aa12.15□□□□□ -0.47
MSH6-204ENST00000445503 KCNMB4Q86W47 210 aa12.15□□□□□ -0.47
MSH6-204ENST00000445503 RIOX2Q8IUF8 465 aa12.15□□□□□ -0.47
MSH6-204ENST00000445503 APLFQ8IW19 511 aaPredicted RBP12.15□□□□□ -0.47
MSH6-204ENST00000445503 MFSD3Q96ES6 412 aa12.15□□□□□ -0.47
MSH6-204ENST00000445503 MPP4Q96JB8 637 aa12.15□□□□□ -0.47
MSH6-204ENST00000445503 GRIP2Q9C0E4 1043 aa12.15□□□□□ -0.47
MSH6-204ENST00000445503 CAAP1Q9H8G2 361 aa12.15□□□□□ -0.47
MSH6-204ENST00000445503 GBA2Q9HCG7 927 aaPredicted RBP12.15□□□□□ -0.47
MSH6-204ENST00000445503 AURKCQ9UQB9 309 aa12.15□□□□□ -0.47
MSH6-204ENST00000445503 MYH9P35579 1960 aaKnown RBP12.14□□□□□ -0.47
MSH6-204ENST00000445503 DYNC1LI2O43237 492 aaPredicted RBP12.14□□□□□ -0.47
MSH6-204ENST00000445503 LGALS2P05162 132 aa12.14□□□□□ -0.47
MSH6-204ENST00000445503 DHRS4L1P0CG22 281 aa12.14□□□□□ -0.47
MSH6-204ENST00000445503 VCLP18206 1134 aa12.14□□□□□ -0.47
MSH6-204ENST00000445503 FGFR3P22607 806 aa12.14□□□□□ -0.47
MSH6-204ENST00000445503 SLC10A2Q12908 348 aaPredicted RBP12.14□□□□□ -0.47
MSH6-204ENST00000445503 NRF1Q16656 503 aa12.14□□□□□ -0.47
MSH6-204ENST00000445503 SOWAHAQ2M3V2 549 aa12.14□□□□□ -0.47
MSH6-204ENST00000445503 FBXO47Q5MNV8 452 aa12.14□□□□□ -0.47
MSH6-204ENST00000445503 TRIM67Q6ZTA4 783 aa12.14□□□□□ -0.47
MSH6-204ENST00000445503 MARK2Q7KZI7 788 aaKnown RBP12.14□□□□□ -0.47
MSH6-204ENST00000445503 APBB2Q92870 758 aa12.14□□□□□ -0.47
MSH6-204ENST00000445503 RCN3Q96D15 328 aa12.14□□□□□ -0.47
MSH6-204ENST00000445503 NAT9Q9BTE0 207 aa12.14□□□□□ -0.47
MSH6-204ENST00000445503 SIRPGQ9P1W8 387 aa12.14□□□□□ -0.47
MSH6-204ENST00000445503 POMPQ9Y244 141 aa12.14□□□□□ -0.47
MSH6-204ENST00000445503 COL24A1Q17RW2 1714 aa12.14□□□□□ -0.47
MSH6-204ENST00000445503 AMHP03971 560 aa12.14□□□□□ -0.47
MSH6-204ENST00000445503 L1CAMP32004 1257 aa12.14□□□□□ -0.47
MSH6-204ENST00000445503 FOLH1Q04609 750 aa12.14□□□□□ -0.47
MSH6-204ENST00000445503 KLF10Q13118 480 aa12.14□□□□□ -0.47
MSH6-204ENST00000445503 ITPRIPL1Q6GPH6 555 aa12.14□□□□□ -0.47
MSH6-204ENST00000445503 TRNP1Q6NT89 227 aa12.14□□□□□ -0.47
MSH6-204ENST00000445503 URGCPQ8TCY9 931 aa12.14□□□□□ -0.47
MSH6-204ENST00000445503 MZB1Q8WU39 189 aa12.14□□□□□ -0.47
MSH6-204ENST00000445503 JADE3Q92613 823 aa12.14□□□□□ -0.47
MSH6-204ENST00000445503 NR1H4Q96RI1 486 aaPredicted RBP12.14□□□□□ -0.47
MSH6-204ENST00000445503 BCO2Q9BYV7 579 aa12.14□□□□□ -0.47
MSH6-204ENST00000445503 TLE6Q9H808 572 aa12.14□□□□□ -0.47
MSH6-204ENST00000445503 ADM5C9JUS6 153 aa12.14□□□□□ -0.47
MSH6-204ENST00000445503 ABLIM1O14639 778 aa12.14□□□□□ -0.47
MSH6-204ENST00000445503 CSPG5O95196 566 aa12.14□□□□□ -0.47
MSH6-204ENST00000445503 C2P06681 752 aa12.14□□□□□ -0.47
MSH6-204ENST00000445503 PRKCHP24723 683 aa12.14□□□□□ -0.47
MSH6-204ENST00000445503 LMO2P25791 158 aa12.14□□□□□ -0.47
MSH6-204ENST00000445503 ADCYAP1R1P41586 468 aa12.14□□□□□ -0.47
MSH6-204ENST00000445503 ACADSBP45954 432 aa12.14□□□□□ -0.47
MSH6-204ENST00000445503 GSTA3Q16772 222 aa12.14□□□□□ -0.47
MSH6-204ENST00000445503 SFT2D3Q587I9 215 aa12.14□□□□□ -0.47
MSH6-204ENST00000445503 ZNF484Q5JVG2 852 aa12.14□□□□□ -0.47
MSH6-204ENST00000445503 HABP4Q5JVS0 413 aaKnown RBP12.14□□□□□ -0.47
MSH6-204ENST00000445503 CYP2R1Q6VVX0 501 aa12.14□□□□□ -0.47
MSH6-204ENST00000445503 FAM156AQ8NDB6 213 aa12.14□□□□□ -0.47
MSH6-204ENST00000445503 SHKBP1Q8TBC3 707 aa12.14□□□□□ -0.47
MSH6-204ENST00000445503 TRAPPC9Q96Q05 1148 aa12.14□□□□□ -0.47
MSH6-204ENST00000445503 MRPL1Q9BYD6 325 aaKnown RBP12.14□□□□□ -0.47
MSH6-204ENST00000445503 ATG7O95352 703 aa12.13□□□□□ -0.47
MSH6-204ENST00000445503 TKTL1P51854 596 aa12.13□□□□□ -0.47
MSH6-204ENST00000445503 RAP1GDS1P52306 607 aa12.13□□□□□ -0.47
MSH6-204ENST00000445503 STX1BP61266 288 aa12.13□□□□□ -0.47
MSH6-204ENST00000445503 IRF9Q00978 393 aa12.13□□□□□ -0.47
MSH6-204ENST00000445503 DGKDQ16760 1214 aa12.13□□□□□ -0.47
MSH6-204ENST00000445503 PAN2Q504Q3 1202 aaKnown RBP12.13□□□□□ -0.47
MSH6-204ENST00000445503 LIN52Q52LA3 116 aa12.13□□□□□ -0.47
MSH6-204ENST00000445503 GRTP1Q5TC63 336 aa12.13□□□□□ -0.47
MSH6-204ENST00000445503 FRMD7Q6ZUT3 714 aa12.13□□□□□ -0.47
MSH6-204ENST00000445503 IFNEQ86WN2 208 aa12.13□□□□□ -0.47
MSH6-204ENST00000445503 BHLHE22Q8NFJ8 381 aaPredicted RBP12.13□□□□□ -0.47
MSH6-204ENST00000445503 OXCT2Q9BYC2 517 aaPredicted RBP12.13□□□□□ -0.47
MSH6-204ENST00000445503 SCN9AQ15858 1988 aa12.13□□□□□ -0.47
MSH6-204ENST00000445503 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP12.13□□□□□ -0.47
MSH6-204ENST00000445503 ASB14A6NK59 587 aa12.13□□□□□ -0.47
MSH6-204ENST00000445503 FAM159BA6NKW6 160 aa12.13□□□□□ -0.47
MSH6-204ENST00000445503 RECQL4O94761 1208 aa12.13□□□□□ -0.47
MSH6-204ENST00000445503 VAPBO95292 243 aa12.13□□□□□ -0.47
MSH6-204ENST00000445503 IQCF3P0C7M6 154 aa12.13□□□□□ -0.47
MSH6-204ENST00000445503 DLG1Q12959 904 aa12.13□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms