RNA–Protein interactions for RNA: ENST00000443711.2

USP40-206, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-206ENST00000443711 C8orf33Q9H7E9 229 aaPredicted RBP16.24■□□□□ 0.19
USP40-206ENST00000443711 TMEM248Q9NWD8 314 aa16.24■□□□□ 0.19
USP40-206ENST00000443711 NUP205Q92621 2012 aa16.24■□□□□ 0.19
USP40-206ENST00000443711 XIRP2A4UGR9 3374 aa16.23■□□□□ 0.19
USP40-206ENST00000443711 KCNK3O14649 394 aa16.23■□□□□ 0.19
USP40-206ENST00000443711 ATP1A1P05023 1023 aaKnown RBP16.23■□□□□ 0.19
USP40-206ENST00000443711 PYGMP11217 842 aa16.23■□□□□ 0.19
USP40-206ENST00000443711 GLULP15104 373 aa16.23■□□□□ 0.19
USP40-206ENST00000443711 OR1E1P30953 314 aa16.23■□□□□ 0.19
USP40-206ENST00000443711 CDKN2BP42772 138 aa16.23■□□□□ 0.19
USP40-206ENST00000443711 MAPKAPK2P49137 400 aa16.23■□□□□ 0.19
USP40-206ENST00000443711 OXCT1P55809 520 aa16.23■□□□□ 0.19
USP40-206ENST00000443711 CDH18Q13634 790 aa16.23■□□□□ 0.19
USP40-206ENST00000443711 TFDP2Q14188 446 aa16.23■□□□□ 0.19
USP40-206ENST00000443711 PPP2R5EQ16537 467 aa16.23■□□□□ 0.19
USP40-206ENST00000443711 TAZQ16635 292 aa16.23■□□□□ 0.19
USP40-206ENST00000443711 GAB4Q2WGN9 574 aa16.23■□□□□ 0.19
USP40-206ENST00000443711 NYAP1Q6ZVC0 841 aa16.23■□□□□ 0.19
USP40-206ENST00000443711 TFAP2DQ7Z6R9 452 aa16.23■□□□□ 0.19
USP40-206ENST00000443711 NLRP14Q86W24 1093 aa16.23■□□□□ 0.19
USP40-206ENST00000443711 RFX6Q8HWS3 928 aa16.23■□□□□ 0.19
USP40-206ENST00000443711 MFN1Q8IWA4 741 aa16.23■□□□□ 0.19
USP40-206ENST00000443711 NAT16Q8N8M0 369 aa16.23■□□□□ 0.19
USP40-206ENST00000443711 PCDH19Q8TAB3 1148 aa16.23■□□□□ 0.19
USP40-206ENST00000443711 TRAF3IP1Q8TDR0 691 aaPredicted RBP16.23■□□□□ 0.19
USP40-206ENST00000443711 P2RY11Q96G91 374 aa16.23■□□□□ 0.19
USP40-206ENST00000443711 NAPGQ99747 312 aaPredicted RBP16.23■□□□□ 0.19
USP40-206ENST00000443711 CARD9Q9H257 536 aa16.23■□□□□ 0.19
USP40-206ENST00000443711 ARHGEF4Q9NR80 690 aa16.23■□□□□ 0.19
USP40-206ENST00000443711 FBXO10Q9UK96 956 aa16.23■□□□□ 0.19
USP40-206ENST00000443711 TBC1D30Q9Y2I9 924 aa16.23■□□□□ 0.19
USP40-206ENST00000443711 MIA3Q5JRA6 1907 aa16.23■□□□□ 0.19
USP40-206ENST00000443711 COL4A2P08572 1712 aa16.22■□□□□ 0.19
USP40-206ENST00000443711 SPTBN5Q9NRC6 3674 aaKnown RBP16.22■□□□□ 0.19
USP40-206ENST00000443711 CTAGE9A4FU28 777 aa16.22■□□□□ 0.19
USP40-206ENST00000443711 PALM2-AKAP2B1ALY0 433 aaPredicted RBP16.22■□□□□ 0.19
USP40-206ENST00000443711 KIF2AO00139 706 aaPredicted RBP16.22■□□□□ 0.19
USP40-206ENST00000443711 ZFXP17010 805 aaPredicted RBP16.22■□□□□ 0.19
USP40-206ENST00000443711 CASQ1P31415 396 aa16.22■□□□□ 0.19
USP40-206ENST00000443711 PTPN7P35236 360 aa16.22■□□□□ 0.19
USP40-206ENST00000443711 ZNF211Q13398 564 aaPredicted RBP16.22■□□□□ 0.19
USP40-206ENST00000443711 SLC44A4Q53GD3 710 aa16.22■□□□□ 0.19
USP40-206ENST00000443711 C6orf118Q5T5N4 469 aa16.22■□□□□ 0.19
USP40-206ENST00000443711 SEL1L2Q5TEA6 688 aa16.22■□□□□ 0.19
USP40-206ENST00000443711 TMCO3Q6UWJ1 677 aa16.22■□□□□ 0.19
USP40-206ENST00000443711 SETD3Q86TU7 594 aaPredicted RBP16.22■□□□□ 0.19
USP40-206ENST00000443711 RALGPS2Q86X27 583 aaPredicted RBP16.22■□□□□ 0.19
USP40-206ENST00000443711 ETFBKMTQ8IXQ9 262 aa16.22■□□□□ 0.19
USP40-206ENST00000443711 UBALD2Q8IYN6 164 aa16.22■□□□□ 0.19
USP40-206ENST00000443711 LZTR1Q8N653 840 aa16.22■□□□□ 0.19
USP40-206ENST00000443711 EXOC4Q96A65 974 aa16.22■□□□□ 0.19
USP40-206ENST00000443711 MSANTD3Q96H12 275 aa16.22■□□□□ 0.19
USP40-206ENST00000443711 PBKQ96KB5 322 aa16.22■□□□□ 0.19
USP40-206ENST00000443711 C16orf45Q96MC5 204 aaPredicted RBP16.22■□□□□ 0.19
USP40-206ENST00000443711 OSBPL8Q9BZF1 889 aa16.22■□□□□ 0.19
USP40-206ENST00000443711 CD320Q9NPF0 282 aa16.22■□□□□ 0.19
USP40-206ENST00000443711 HEBP1Q9NRV9 189 aa16.22■□□□□ 0.19
USP40-206ENST00000443711 DNAJC17Q9NVM6 304 aaKnown RBP16.22■□□□□ 0.19
USP40-206ENST00000443711 KIAA1522Q9P206 1035 aaPredicted RBP16.22■□□□□ 0.19
USP40-206ENST00000443711 DEC1Q9P2X7 70 aa16.22■□□□□ 0.19
USP40-206ENST00000443711 ZNF212Q9UDV6 495 aa16.22■□□□□ 0.19
USP40-206ENST00000443711 DNAI1Q9UI46 699 aa16.22■□□□□ 0.19
USP40-206ENST00000443711 EFR3BQ9Y2G0 817 aa16.22■□□□□ 0.19
USP40-206ENST00000443711 PIAS3Q9Y6X2 628 aa16.22■□□□□ 0.19
USP40-206ENST00000443711 COL6A3P12111 3177 aa16.22■□□□□ 0.19
USP40-206ENST00000443711 hCG_1818297A0A087WSY0 165 aa16.21■□□□□ 0.19
USP40-206ENST00000443711 SPECC1L-ADORA2AF8WAN1 911 aa16.21■□□□□ 0.19
USP40-206ENST00000443711 APOL1O14791 398 aa16.21■□□□□ 0.19
USP40-206ENST00000443711 DCLK1O15075 740 aa16.21■□□□□ 0.19
USP40-206ENST00000443711 TULP3O75386 442 aa16.21■□□□□ 0.19
USP40-206ENST00000443711 RHOCP08134 193 aa16.21■□□□□ 0.19
USP40-206ENST00000443711 CISD3P0C7P0 127 aa16.21■□□□□ 0.19
USP40-206ENST00000443711 KRT10P13645 584 aa16.21■□□□□ 0.19
USP40-206ENST00000443711 OPRD1P41143 372 aa16.21■□□□□ 0.19
USP40-206ENST00000443711 EIF2DP41214 584 aaKnown RBP16.21■□□□□ 0.19
USP40-206ENST00000443711 SLC6A11P48066 632 aa16.21■□□□□ 0.19
USP40-206ENST00000443711 SOX9P48436 509 aa16.21■□□□□ 0.19
USP40-206ENST00000443711 DGKGP49619 791 aa16.21■□□□□ 0.19
USP40-206ENST00000443711 SLC12A1Q13621 1099 aa16.21■□□□□ 0.19
USP40-206ENST00000443711 PREPLQ4J6C6 727 aaPredicted RBP16.21■□□□□ 0.19
USP40-206ENST00000443711 DCAF12L1Q5VU92 463 aa16.21■□□□□ 0.19
USP40-206ENST00000443711 KAZNQ674X7 775 aa16.21■□□□□ 0.19
USP40-206ENST00000443711 GRAMD4Q6IC98 578 aa16.21■□□□□ 0.19
USP40-206ENST00000443711 SYT10Q6XYQ8 523 aa16.21■□□□□ 0.19
USP40-206ENST00000443711 ZNF783Q6ZMS7 281 aa16.21■□□□□ 0.19
USP40-206ENST00000443711 UMODL1-AS1Q8N2C9 162 aa16.21■□□□□ 0.19
USP40-206ENST00000443711 PQLC3Q8N755 202 aa16.21■□□□□ 0.19
USP40-206ENST00000443711 NECAB3Q96P71 396 aaPredicted RBP16.21■□□□□ 0.19
USP40-206ENST00000443711 PNKPQ96T60 521 aa16.21■□□□□ 0.19
USP40-206ENST00000443711 PSMB7Q99436 277 aa16.21■□□□□ 0.19
USP40-206ENST00000443711 ETNK2Q9NVF9 386 aa16.21■□□□□ 0.19
USP40-206ENST00000443711 WNT16Q9UBV4 365 aa16.21■□□□□ 0.19
USP40-206ENST00000443711 CLEC4EQ9ULY5 219 aa16.21■□□□□ 0.19
USP40-206ENST00000443711 SNX12Q9UMY4 172 aa16.21■□□□□ 0.19
USP40-206ENST00000443711 SLC27A6Q9Y2P4 619 aa16.21■□□□□ 0.19
USP40-206ENST00000443711 ILVBLA1L0T0 632 aa16.2■□□□□ 0.18
USP40-206ENST00000443711 CST8O60676 142 aa16.2■□□□□ 0.18
USP40-206ENST00000443711 PRLRP16471 622 aa16.2■□□□□ 0.18
USP40-206ENST00000443711 TCP1P17987 556 aaKnown RBP16.2■□□□□ 0.18
USP40-206ENST00000443711 CTHP32929 405 aa16.2■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms