RNA–Protein interactions for RNA: ENST00000427724.6

TCOF1-204, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5

Gene TCOF1, Length 4,272 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-204ENST00000427724 UBP1Q9NZI7 540 aa10.9□□□□□ -0.66
TCOF1-204ENST00000427724 CPQQ9Y646 472 aa10.9□□□□□ -0.66
TCOF1-204ENST00000427724 CASQ2O14958 399 aaPredicted RBP10.9□□□□□ -0.66
TCOF1-204ENST00000427724 RASSF9O75901 435 aa10.9□□□□□ -0.66
TCOF1-204ENST00000427724 DRD4P21917 467 aa10.9□□□□□ -0.66
TCOF1-204ENST00000427724 TAF1BQ53T94 588 aaPredicted RBP10.9□□□□□ -0.66
TCOF1-204ENST00000427724 FAXCQ5TGI0 409 aa10.9□□□□□ -0.66
TCOF1-204ENST00000427724 C3orf62Q6ZUJ4 267 aa10.9□□□□□ -0.66
TCOF1-204ENST00000427724 MARK2Q7KZI7 788 aaKnown RBP10.9□□□□□ -0.66
TCOF1-204ENST00000427724 MON1AQ86VX9 555 aa10.9□□□□□ -0.66
TCOF1-204ENST00000427724 TOP6BLQ8N6T0 577 aa10.9□□□□□ -0.66
TCOF1-204ENST00000427724 SCG3Q8WXD2 468 aaKnown RBP10.9□□□□□ -0.66
TCOF1-204ENST00000427724 HIC2Q96JB3 615 aa10.9□□□□□ -0.66
TCOF1-204ENST00000427724 RMDN2Q96LZ7 410 aa10.9□□□□□ -0.66
TCOF1-204ENST00000427724 PCDHA3Q9Y5H8 950 aa10.9□□□□□ -0.66
TCOF1-204ENST00000427724 SNED1Q8TER0 1413 aa10.9□□□□□ -0.67
TCOF1-204ENST00000427724 FGF19O95750 216 aa10.89□□□□□ -0.67
TCOF1-204ENST00000427724 ATP4AP20648 1035 aa10.89□□□□□ -0.67
TCOF1-204ENST00000427724 SLC10A6Q3KNW5 377 aa10.89□□□□□ -0.67
TCOF1-204ENST00000427724 C1orf146Q5VVC0 180 aa10.89□□□□□ -0.67
TCOF1-204ENST00000427724 DNAJB7Q7Z6W7 309 aaPredicted RBP10.89□□□□□ -0.67
TCOF1-204ENST00000427724 AHCYL2Q96HN2 611 aaKnown RBP10.89□□□□□ -0.67
TCOF1-204ENST00000427724 SAMD11Q96NU1 681 aa10.89□□□□□ -0.67
TCOF1-204ENST00000427724 TMEM237Q96Q45 408 aa10.89□□□□□ -0.67
TCOF1-204ENST00000427724 ZNF576Q9H609 170 aa10.89□□□□□ -0.67
TCOF1-204ENST00000427724 GMIPQ9P107 970 aa10.89□□□□□ -0.67
TCOF1-204ENST00000427724 SMG5Q9UPR3 1016 aaKnown RBP10.89□□□□□ -0.67
TCOF1-204ENST00000427724 MYBPHLA2RUH7 354 aa10.89□□□□□ -0.67
TCOF1-204ENST00000427724 RFXAPO00287 272 aa10.89□□□□□ -0.67
TCOF1-204ENST00000427724 INPPL1O15357 1258 aa10.89□□□□□ -0.67
TCOF1-204ENST00000427724 NOL3O60936 208 aaKnown RBP10.89□□□□□ -0.67
TCOF1-204ENST00000427724 PAEPP09466 180 aa10.89□□□□□ -0.67
TCOF1-204ENST00000427724 CHRM3P20309 590 aa10.89□□□□□ -0.67
TCOF1-204ENST00000427724 MTHFRP42898 656 aa10.89□□□□□ -0.67
TCOF1-204ENST00000427724 AUHQ13825 339 aaKnown RBP10.89□□□□□ -0.67
TCOF1-204ENST00000427724 RCN1Q15293 331 aa10.89□□□□□ -0.67
TCOF1-204ENST00000427724 CHCHD3Q9NX63 227 aaKnown RBP10.89□□□□□ -0.67
TCOF1-204ENST00000427724 SENP1Q9P0U3 644 aa10.89□□□□□ -0.67
TCOF1-204ENST00000427724 CAMSAP3Q9P1Y5 1249 aaPredicted RBP10.89□□□□□ -0.67
TCOF1-204ENST00000427724 ARHGAP28Q9P2N2 729 aa10.89□□□□□ -0.67
TCOF1-204ENST00000427724 GJD2Q9UKL4 321 aa10.89□□□□□ -0.67
TCOF1-204ENST00000427724 PHTF1Q9UMS5 762 aa10.89□□□□□ -0.67
TCOF1-204ENST00000427724 C1QTNF3-AMACRE9PGA6 284 aa10.89□□□□□ -0.67
TCOF1-204ENST00000427724 BAIAP3O94812 1187 aa10.89□□□□□ -0.67
TCOF1-204ENST00000427724 IGSF6O95976 241 aa10.89□□□□□ -0.67
TCOF1-204ENST00000427724 PECAM1P16284 738 aaPredicted RBP10.89□□□□□ -0.67
TCOF1-204ENST00000427724 KRT4P19013 534 aa10.89□□□□□ -0.67
TCOF1-204ENST00000427724 BMPR1AP36894 532 aa10.89□□□□□ -0.67
TCOF1-204ENST00000427724 KPNA2P52292 529 aaKnown RBP10.89□□□□□ -0.67
TCOF1-204ENST00000427724 NCKAP1LP55160 1127 aa10.89□□□□□ -0.67
TCOF1-204ENST00000427724 ERVK-21P61565 698 aa10.89□□□□□ -0.67
TCOF1-204ENST00000427724 CENPCQ03188 943 aa10.89□□□□□ -0.67
TCOF1-204ENST00000427724 MFSD4BQ5TF39 518 aa10.89□□□□□ -0.67
TCOF1-204ENST00000427724 GRAMD4Q6IC98 578 aa10.89□□□□□ -0.67
TCOF1-204ENST00000427724 DHX30Q7L2E3 1194 aaKnown RBP eCLIP10.89□□□□□ -0.67
TCOF1-204ENST00000427724 ZNF572Q7Z3I7 529 aaPredicted RBP10.89□□□□□ -0.67
TCOF1-204ENST00000427724 PRUNE1Q86TP1 453 aa10.89□□□□□ -0.67
TCOF1-204ENST00000427724 CFAP52Q8N1V2 620 aa10.89□□□□□ -0.67
TCOF1-204ENST00000427724 FAM71DQ8N9W8 422 aa10.89□□□□□ -0.67
TCOF1-204ENST00000427724 PPHLN1Q8NEY8 458 aaKnown RBP10.89□□□□□ -0.67
TCOF1-204ENST00000427724 SRPK1Q96SB4 655 aaKnown RBP10.89□□□□□ -0.67
TCOF1-204ENST00000427724 NRDE2Q9H7Z3 1164 aa10.89□□□□□ -0.67
TCOF1-204ENST00000427724 RRN3Q9NYV6 651 aa10.89□□□□□ -0.67
TCOF1-204ENST00000427724 PSMC3IPQ9P2W1 217 aaPredicted RBP10.89□□□□□ -0.67
TCOF1-204ENST00000427724 MARCOQ9UEW3 520 aaPredicted RBP10.89□□□□□ -0.67
TCOF1-204ENST00000427724 TRIM33Q9UPN9 1127 aa10.89□□□□□ -0.67
TCOF1-204ENST00000427724 TCRBV7S2A1N4TA0A589 114 aa10.89□□□□□ -0.67
TCOF1-204ENST00000427724 KRT38O76015 456 aa10.89□□□□□ -0.67
TCOF1-204ENST00000427724 NCF2P19878 526 aaPredicted RBP10.89□□□□□ -0.67
TCOF1-204ENST00000427724 SERPINB3P29508 390 aa10.89□□□□□ -0.67
TCOF1-204ENST00000427724 GCNT1Q02742 428 aa10.89□□□□□ -0.67
TCOF1-204ENST00000427724 MCL1Q07820 350 aa10.89□□□□□ -0.67
TCOF1-204ENST00000427724 COL13A1Q5TAT6 717 aaPredicted RBP10.89□□□□□ -0.67
TCOF1-204ENST00000427724 ARHGAP22Q7Z5H3 698 aa10.89□□□□□ -0.67
TCOF1-204ENST00000427724 ANKRD52Q8NB46 1076 aa10.89□□□□□ -0.67
TCOF1-204ENST00000427724 LPCAT1Q8NF37 534 aa10.89□□□□□ -0.67
TCOF1-204ENST00000427724 NDE1Q9NXR1 346 aa10.89□□□□□ -0.67
TCOF1-204ENST00000427724 COG5Q9UP83 839 aa10.89□□□□□ -0.67
TCOF1-204ENST00000427724 PHF24Q9UPV7 400 aa10.89□□□□□ -0.67
TCOF1-204ENST00000427724 SPTA1P02549 2419 aa10.89□□□□□ -0.67
TCOF1-204ENST00000427724 DHPSP49366 369 aaPredicted RBP10.88□□□□□ -0.67
TCOF1-204ENST00000427724 CLK2P49760 499 aaKnown RBP10.88□□□□□ -0.67
TCOF1-204ENST00000427724 VCPP55072 806 aaKnown RBP10.88□□□□□ -0.67
TCOF1-204ENST00000427724 DEFB103AP81534 67 aa10.88□□□□□ -0.67
TCOF1-204ENST00000427724 ASPHQ12797 758 aa10.88□□□□□ -0.67
TCOF1-204ENST00000427724 ZACNQ401N2 412 aa10.88□□□□□ -0.67
TCOF1-204ENST00000427724 HABP4Q5JVS0 413 aaKnown RBP10.88□□□□□ -0.67
TCOF1-204ENST00000427724 TRIM67Q6ZTA4 783 aa10.88□□□□□ -0.67
TCOF1-204ENST00000427724 TRIM42Q8IWZ5 723 aa10.88□□□□□ -0.67
TCOF1-204ENST00000427724 C1QTNF7Q9BXJ2 289 aa10.88□□□□□ -0.67
TCOF1-204ENST00000427724 USP18Q9UMW8 372 aa10.88□□□□□ -0.67
TCOF1-204ENST00000427724 NCANO14594 1321 aa10.88□□□□□ -0.67
TCOF1-204ENST00000427724 PTPRJQ12913 1337 aa10.88□□□□□ -0.67
TCOF1-204ENST00000427724 C4AP0C0L4 1744 aa10.88□□□□□ -0.67
TCOF1-204ENST00000427724 A8MUI8 341 aa10.88□□□□□ -0.67
TCOF1-204ENST00000427724 SERPINF2P08697 491 aa10.88□□□□□ -0.67
TCOF1-204ENST00000427724 C21orf59P57076 290 aa10.88□□□□□ -0.67
TCOF1-204ENST00000427724 SLC6A3Q01959 620 aa10.88□□□□□ -0.67
TCOF1-204ENST00000427724 BCL2L1Q07817 233 aa10.88□□□□□ -0.67
TCOF1-204ENST00000427724 XRCC4Q13426 336 aa10.88□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms