RNA–Protein interactions for RNA: ENST00000422491.6

USP54-204, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best) BASIC

Gene USP54, Length 2,777 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-204ENST00000422491 ANKRD60Q9BZ19 345 aa10.95□□□□□ -0.66
USP54-204ENST00000422491 SEMA6AQ9H2E6 1030 aa10.95□□□□□ -0.66
USP54-204ENST00000422491 CLK4Q9HAZ1 481 aaKnown RBP10.95□□□□□ -0.66
USP54-204ENST00000422491 TBC1D23Q9NUY8 699 aa10.95□□□□□ -0.66
USP54-204ENST00000422491 SERPINA10Q9UK55 444 aa10.95□□□□□ -0.66
USP54-204ENST00000422491 COQ6Q9Y2Z9 468 aa10.95□□□□□ -0.66
USP54-204ENST00000422491 LY75O60449 1722 aa10.95□□□□□ -0.66
USP54-204ENST00000422491 TESPA1A2RU30 521 aaPredicted RBP10.94□□□□□ -0.66
USP54-204ENST00000422491 TMEM114B3SHH9 223 aa10.94□□□□□ -0.66
USP54-204ENST00000422491 G3V2L1 256 aa10.94□□□□□ -0.66
USP54-204ENST00000422491 G3V3G9 751 aa10.94□□□□□ -0.66
USP54-204ENST00000422491 PLOD2O00469 737 aa10.94□□□□□ -0.66
USP54-204ENST00000422491 APOL1O14791 398 aa10.94□□□□□ -0.66
USP54-204ENST00000422491 ADAM23O75077 832 aa10.94□□□□□ -0.66
USP54-204ENST00000422491 GCATO75600 419 aa10.94□□□□□ -0.66
USP54-204ENST00000422491 CD19P15391 556 aa10.94□□□□□ -0.66
USP54-204ENST00000422491 HMOX2P30519 316 aa10.94□□□□□ -0.66
USP54-204ENST00000422491 HOXD12P35452 270 aa10.94□□□□□ -0.66
USP54-204ENST00000422491 CAP2P40123 477 aa10.94□□□□□ -0.66
USP54-204ENST00000422491 TNFSF9P41273 254 aa10.94□□□□□ -0.66
USP54-204ENST00000422491 AP3M2P53677 418 aa10.94□□□□□ -0.66
USP54-204ENST00000422491 ZNF829Q3KNS6 432 aaPredicted RBP10.94□□□□□ -0.66
USP54-204ENST00000422491 DCAF8Q5TAQ9 597 aa10.94□□□□□ -0.66
USP54-204ENST00000422491 KRT80Q6KB66 452 aa10.94□□□□□ -0.66
USP54-204ENST00000422491 DCLRE1AQ6PJP8 1040 aa10.94□□□□□ -0.66
USP54-204ENST00000422491 C4orf22Q6V702 233 aa10.94□□□□□ -0.66
USP54-204ENST00000422491 GPR141Q7Z602 305 aa10.94□□□□□ -0.66
USP54-204ENST00000422491 SETD3Q86TU7 594 aaPredicted RBP10.94□□□□□ -0.66
USP54-204ENST00000422491 BRSK2Q8IWQ3 736 aa10.94□□□□□ -0.66
USP54-204ENST00000422491 SLC15A3Q8IY34 581 aa10.94□□□□□ -0.66
USP54-204ENST00000422491 MYO1HQ8N1T3 1032 aa10.94□□□□□ -0.66
USP54-204ENST00000422491 FAM156AQ8NDB6 213 aa10.94□□□□□ -0.66
USP54-204ENST00000422491 PCDH19Q8TAB3 1148 aa10.94□□□□□ -0.66
USP54-204ENST00000422491 AGR3Q8TD06 166 aa10.94□□□□□ -0.66
USP54-204ENST00000422491 CDKL2Q92772 493 aa10.94□□□□□ -0.66
USP54-204ENST00000422491 BORCS5Q969J3 196 aa10.94□□□□□ -0.66
USP54-204ENST00000422491 SLC29A1Q99808 456 aa10.94□□□□□ -0.66
USP54-204ENST00000422491 TUT1Q9H6E5 874 aaKnown RBP10.94□□□□□ -0.66
USP54-204ENST00000422491 DOLKQ9UPQ8 538 aa10.94□□□□□ -0.66
USP54-204ENST00000422491 SLC8A2Q9UPR5 921 aa10.94□□□□□ -0.66
USP54-204ENST00000422491 TMEM247A6NEH6 219 aa10.94□□□□□ -0.66
USP54-204ENST00000422491 TMX2-CTNND1H3BSU7 103 aa10.94□□□□□ -0.66
USP54-204ENST00000422491 PSMD12O00232 456 aaPredicted RBP10.94□□□□□ -0.66
USP54-204ENST00000422491 FOXD2O60548 495 aaPredicted RBP10.94□□□□□ -0.66
USP54-204ENST00000422491 TADA2AO75478 443 aa10.94□□□□□ -0.66
USP54-204ENST00000422491 INHBBP09529 407 aa10.94□□□□□ -0.66
USP54-204ENST00000422491 ZNF12P17014 697 aa10.94□□□□□ -0.66
USP54-204ENST00000422491 TYK2P29597 1187 aa10.94□□□□□ -0.66
USP54-204ENST00000422491 PPARGP37231 505 aaPredicted RBP10.94□□□□□ -0.66
USP54-204ENST00000422491 MAGEA12P43365 314 aa10.94□□□□□ -0.66
USP54-204ENST00000422491 CRADDP78560 199 aa10.94□□□□□ -0.66
USP54-204ENST00000422491 PRKCEQ02156 737 aa10.94□□□□□ -0.66
USP54-204ENST00000422491 HERC3Q15034 1050 aa10.94□□□□□ -0.66
USP54-204ENST00000422491 FAM98CQ17RN3 349 aaKnown RBP10.94□□□□□ -0.66
USP54-204ENST00000422491 ZBED5Q49AG3 693 aa10.94□□□□□ -0.66
USP54-204ENST00000422491 DACT2Q5SW24 774 aa10.94□□□□□ -0.66
USP54-204ENST00000422491 SWSAP1Q6NVH7 229 aa10.94□□□□□ -0.66
USP54-204ENST00000422491 PODNQ7Z5L7 613 aa10.94□□□□□ -0.66
USP54-204ENST00000422491 CPNE9Q8IYJ1 553 aa10.94□□□□□ -0.66
USP54-204ENST00000422491 PLD6Q8N2A8 252 aaKnown RBP10.94□□□□□ -0.66
USP54-204ENST00000422491 ADAM32Q8TC27 787 aa10.94□□□□□ -0.66
USP54-204ENST00000422491 ADAMTS16Q8TE57 1224 aa10.94□□□□□ -0.66
USP54-204ENST00000422491 LRTOMTQ8WZ04 291 aa10.94□□□□□ -0.66
USP54-204ENST00000422491 PDCD2LQ9BRP1 358 aa10.94□□□□□ -0.66
USP54-204ENST00000422491 DCUN1D5Q9BTE7 237 aa10.94□□□□□ -0.66
USP54-204ENST00000422491 HIPK3Q9H422 1215 aa10.94□□□□□ -0.66
USP54-204ENST00000422491 SELENONQ9NZV5 590 aa10.94□□□□□ -0.66
USP54-204ENST00000422491 E2F8A0AVK6 867 aa10.94□□□□□ -0.66
USP54-204ENST00000422491 K7ERI5 159 aa10.94□□□□□ -0.66
USP54-204ENST00000422491 E2F6O75461 281 aa10.94□□□□□ -0.66
USP54-204ENST00000422491 CSPG5O95196 566 aa10.94□□□□□ -0.66
USP54-204ENST00000422491 VAPBO95292 243 aa10.94□□□□□ -0.66
USP54-204ENST00000422491 ADSLP30566 484 aaPredicted RBP10.94□□□□□ -0.66
USP54-204ENST00000422491 RPS6P62753 249 aaKnown RBP10.94□□□□□ -0.66
USP54-204ENST00000422491 NAB1Q13506 487 aa10.94□□□□□ -0.66
USP54-204ENST00000422491 SEMA5AQ13591 1074 aa10.94□□□□□ -0.66
USP54-204ENST00000422491 C15orf59Q2T9L4 293 aaPredicted RBP10.94□□□□□ -0.66
USP54-204ENST00000422491 FASTKD5Q7L8L6 764 aaKnown RBP10.94□□□□□ -0.66
USP54-204ENST00000422491 ZSCAN18Q8TBC5 510 aaPredicted RBP10.94□□□□□ -0.66
USP54-204ENST00000422491 ISL2Q96A47 359 aa10.94□□□□□ -0.66
USP54-204ENST00000422491 TMEM143Q96AN5 459 aa10.94□□□□□ -0.66
USP54-204ENST00000422491 ASB9Q96DX5 294 aa10.94□□□□□ -0.66
USP54-204ENST00000422491 SGF29Q96ES7 293 aa10.94□□□□□ -0.66
USP54-204ENST00000422491 CNPY3Q9BT09 278 aa10.94□□□□□ -0.66
USP54-204ENST00000422491 GLIS2Q9BZE0 524 aaPredicted RBP10.94□□□□□ -0.66
USP54-204ENST00000422491 BRD8Q9H0E9 1235 aa10.94□□□□□ -0.66
USP54-204ENST00000422491 XYLT2Q9H1B5 865 aa10.94□□□□□ -0.66
USP54-204ENST00000422491 SNX15Q9NRS6 342 aa10.94□□□□□ -0.66
USP54-204ENST00000422491 DUS2Q9NX74 493 aaKnown RBP10.94□□□□□ -0.66
USP54-204ENST00000422491 TUBA8Q9NY65 449 aaPredicted RBP10.94□□□□□ -0.66
USP54-204ENST00000422491 CDC14AQ9UNH5 594 aa10.94□□□□□ -0.66
USP54-204ENST00000422491 AP4S1Q9Y587 144 aa10.94□□□□□ -0.66
USP54-204ENST00000422491 SCN9AQ15858 1988 aa10.93□□□□□ -0.66
USP54-204ENST00000422491 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP10.93□□□□□ -0.66
USP54-204ENST00000422491 HTR3EA5X5Y0 456 aa10.93□□□□□ -0.66
USP54-204ENST00000422491 C2CD4BA6NLJ0 364 aa10.93□□□□□ -0.66
USP54-204ENST00000422491 SOBPA7XYQ1 873 aa10.93□□□□□ -0.66
USP54-204ENST00000422491 PALM2-AKAP2B1ALY0 433 aaPredicted RBP10.93□□□□□ -0.66
USP54-204ENST00000422491 C9IYK1 514 aa10.93□□□□□ -0.66
USP54-204ENST00000422491 NEMP1O14524 444 aa10.93□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms