RNA–Protein interactions for RNA: ENST00000414879.5

PTPRF-205, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,836 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-205ENST00000414879 KRT6CP48668 564 aa12.22□□□□□ -0.45
PTPRF-205ENST00000414879 CSE1LP55060 971 aaKnown RBP12.22□□□□□ -0.45
PTPRF-205ENST00000414879 C6orf10Q5SRN2 563 aa12.22□□□□□ -0.45
PTPRF-205ENST00000414879 RGS9BPQ6ZS82 235 aa12.22□□□□□ -0.45
PTPRF-205ENST00000414879 LPCAT1Q8NF37 534 aa12.22□□□□□ -0.45
PTPRF-205ENST00000414879 RIN3Q8TB24 985 aa12.22□□□□□ -0.45
PTPRF-205ENST00000414879 STARD8Q92502 1023 aa12.22□□□□□ -0.45
PTPRF-205ENST00000414879 ERP27Q96DN0 273 aa12.22□□□□□ -0.45
PTPRF-205ENST00000414879 SNX27Q96L92 541 aa12.22□□□□□ -0.45
PTPRF-205ENST00000414879 PGLYRP2Q96PD5 576 aa12.22□□□□□ -0.45
PTPRF-205ENST00000414879 EFCAB1Q9HAE3 211 aa12.22□□□□□ -0.45
PTPRF-205ENST00000414879 ZKSCAN7Q9P0L1 754 aaPredicted RBP12.22□□□□□ -0.45
PTPRF-205ENST00000414879 TBC1D14Q9P2M4 693 aa12.22□□□□□ -0.45
PTPRF-205ENST00000414879 CNTNAP1P78357 1384 aa12.22□□□□□ -0.45
PTPRF-205ENST00000414879 hCG_1818297A0A087WSY0 165 aa12.22□□□□□ -0.45
PTPRF-205ENST00000414879 WNT7AO00755 349 aa12.22□□□□□ -0.45
PTPRF-205ENST00000414879 SERPINE1P05121 402 aa12.22□□□□□ -0.45
PTPRF-205ENST00000414879 ENO1P06733 434 aaKnown RBP12.22□□□□□ -0.45
PTPRF-205ENST00000414879 COPAP53621 1224 aa12.22□□□□□ -0.45
PTPRF-205ENST00000414879 RFX8Q6ZV50 586 aa12.22□□□□□ -0.45
PTPRF-205ENST00000414879 SLC26A9Q7LBE3 791 aa12.22□□□□□ -0.45
PTPRF-205ENST00000414879 ARID3BQ8IVW6 561 aaPredicted RBP12.22□□□□□ -0.45
PTPRF-205ENST00000414879 HEXDCQ8WVB3 486 aa12.22□□□□□ -0.45
PTPRF-205ENST00000414879 ARL8AQ96BM9 186 aa12.22□□□□□ -0.45
PTPRF-205ENST00000414879 TSEN34Q9BSV6 310 aaKnown RBP12.22□□□□□ -0.45
PTPRF-205ENST00000414879 NMRK2Q9NPI5 230 aa12.22□□□□□ -0.45
PTPRF-205ENST00000414879 COMMD8Q9NX08 183 aa12.22□□□□□ -0.45
PTPRF-205ENST00000414879 POLG2Q9UHN1 485 aa12.22□□□□□ -0.45
PTPRF-205ENST00000414879 TNPO3Q9Y5L0 923 aaKnown RBP12.22□□□□□ -0.45
PTPRF-205ENST00000414879 ANKRD36CQ5JPF3 1778 aa12.22□□□□□ -0.45
PTPRF-205ENST00000414879 CCDC78A2IDD5 438 aa12.22□□□□□ -0.45
PTPRF-205ENST00000414879 MTA2O94776 668 aa12.22□□□□□ -0.45
PTPRF-205ENST00000414879 HDCP19113 662 aa12.22□□□□□ -0.45
PTPRF-205ENST00000414879 WARSP23381 471 aaKnown RBP12.22□□□□□ -0.45
PTPRF-205ENST00000414879 ZDHHC20Q5W0Z9 365 aa12.22□□□□□ -0.45
PTPRF-205ENST00000414879 EPS8L3Q8TE67 593 aaKnown RBP12.22□□□□□ -0.45
PTPRF-205ENST00000414879 REPS1Q96D71 796 aa12.22□□□□□ -0.45
PTPRF-205ENST00000414879 FUBP3Q96I24 572 aaKnown RBP eCLIP12.22□□□□□ -0.45
PTPRF-205ENST00000414879 DEFB118Q96PH6 123 aa12.22□□□□□ -0.45
PTPRF-205ENST00000414879 SLC9A7Q96T83 725 aa12.22□□□□□ -0.45
PTPRF-205ENST00000414879 HNRNPABQ99729 332 aaKnown RBP12.22□□□□□ -0.45
PTPRF-205ENST00000414879 NAALADL1Q9UQQ1 740 aa12.22□□□□□ -0.45
PTPRF-205ENST00000414879 GLI3P10071 1580 aa12.22□□□□□ -0.45
PTPRF-205ENST00000414879 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP12.22□□□□□ -0.45
PTPRF-205ENST00000414879 TTC36A6NLP5 189 aa12.22□□□□□ -0.45
PTPRF-205ENST00000414879 ALADP13716 330 aa12.22□□□□□ -0.45
PTPRF-205ENST00000414879 HK2P52789 917 aa12.22□□□□□ -0.45
PTPRF-205ENST00000414879 PATL1Q86TB9 770 aaKnown RBP12.22□□□□□ -0.45
PTPRF-205ENST00000414879 BRI3BPQ8WY22 251 aa12.22□□□□□ -0.45
PTPRF-205ENST00000414879 NDEL1Q9GZM8 345 aa12.22□□□□□ -0.45
PTPRF-205ENST00000414879 NXF3Q9H4D5 531 aaKnown RBP12.22□□□□□ -0.45
PTPRF-205ENST00000414879 WDR41Q9HAD4 459 aa12.22□□□□□ -0.45
PTPRF-205ENST00000414879 APPL1Q9UKG1 709 aa12.22□□□□□ -0.45
PTPRF-205ENST00000414879 SLURP2P0DP57 97 aa12.21□□□□□ -0.45
PTPRF-205ENST00000414879 CTNNB1P35222 781 aa12.21□□□□□ -0.45
PTPRF-205ENST00000414879 YBEYP58557 167 aaPredicted RBP12.21□□□□□ -0.45
PTPRF-205ENST00000414879 ARHGAP17Q68EM7 881 aa12.21□□□□□ -0.45
PTPRF-205ENST00000414879 NPAS4Q8IUM7 802 aa12.21□□□□□ -0.45
PTPRF-205ENST00000414879 USP20Q9Y2K6 914 aa12.21□□□□□ -0.45
PTPRF-205ENST00000414879 RBL1P28749 1068 aa12.21□□□□□ -0.45
PTPRF-205ENST00000414879 KDSRQ06136 332 aa12.21□□□□□ -0.45
PTPRF-205ENST00000414879 SGCGQ13326 291 aa12.21□□□□□ -0.45
PTPRF-205ENST00000414879 POTEHQ6S545 545 aa12.21□□□□□ -0.45
PTPRF-205ENST00000414879 RNF217Q8TC41 542 aa12.21□□□□□ -0.45
PTPRF-205ENST00000414879 BTN2A3PQ96KV6 586 aa12.21□□□□□ -0.45
PTPRF-205ENST00000414879 NINJ2Q9NZG7 142 aa12.21□□□□□ -0.45
PTPRF-205ENST00000414879 TNKS1BP1Q9C0C2 1729 aaKnown RBP12.21□□□□□ -0.45
PTPRF-205ENST00000414879 TRIM13O60858 407 aa12.21□□□□□ -0.46
PTPRF-205ENST00000414879 HSPA13P48723 471 aa12.21□□□□□ -0.46
PTPRF-205ENST00000414879 NKAPQ8N5F7 415 aaKnown RBP12.21□□□□□ -0.46
PTPRF-205ENST00000414879 MCOLN3Q8TDD5 553 aa12.21□□□□□ -0.46
PTPRF-205ENST00000414879 BSNDQ8WZ55 320 aa12.21□□□□□ -0.46
PTPRF-205ENST00000414879 SUSD6Q92537 303 aa12.21□□□□□ -0.46
PTPRF-205ENST00000414879 TMEM159Q96B96 161 aa12.21□□□□□ -0.46
PTPRF-205ENST00000414879 CELF6Q96J87 481 aaKnown RBP12.21□□□□□ -0.46
PTPRF-205ENST00000414879 CLCA2Q9UQC9 943 aa12.21□□□□□ -0.46
PTPRF-205ENST00000414879 HES2Q9Y543 173 aa12.21□□□□□ -0.46
PTPRF-205ENST00000414879 PDE2AO00408 941 aaPredicted RBP12.21□□□□□ -0.46
PTPRF-205ENST00000414879 CLDN11O75508 207 aa12.21□□□□□ -0.46
PTPRF-205ENST00000414879 MLNP12872 115 aa12.21□□□□□ -0.46
PTPRF-205ENST00000414879 RAP1GDS1P52306 607 aa12.21□□□□□ -0.46
PTPRF-205ENST00000414879 JAM2P57087 298 aa12.21□□□□□ -0.46
PTPRF-205ENST00000414879 DGKZQ13574 1117 aa12.21□□□□□ -0.46
PTPRF-205ENST00000414879 PEX6Q13608 980 aa12.21□□□□□ -0.46
PTPRF-205ENST00000414879 GRB14Q14449 540 aa12.21□□□□□ -0.46
PTPRF-205ENST00000414879 GLT6D1Q7Z4J2 308 aa12.21□□□□□ -0.46
PTPRF-205ENST00000414879 PHC3Q8NDX5 983 aa12.21□□□□□ -0.46
PTPRF-205ENST00000414879 KREMEN1Q96MU8 473 aa12.21□□□□□ -0.46
PTPRF-205ENST00000414879 OLFM3Q96PB7 478 aa12.21□□□□□ -0.46
PTPRF-205ENST00000414879 KLF6Q99612 283 aaPredicted RBP12.21□□□□□ -0.46
PTPRF-205ENST00000414879 SEMA4AQ9H3S1 761 aa12.21□□□□□ -0.46
PTPRF-205ENST00000414879 ATP13A3Q9H7F0 1226 aa12.21□□□□□ -0.46
PTPRF-205ENST00000414879 COG4Q9H9E3 785 aa12.21□□□□□ -0.46
PTPRF-205ENST00000414879 BLOC1S6Q9UL45 172 aa12.21□□□□□ -0.46
PTPRF-205ENST00000414879 C16orf96A6NNT2 1141 aa12.2□□□□□ -0.46
PTPRF-205ENST00000414879 C1QTNF3-AMACRE9PGA6 284 aa12.2□□□□□ -0.46
PTPRF-205ENST00000414879 KATNA1O75449 491 aa12.2□□□□□ -0.46
PTPRF-205ENST00000414879 GLUD1P00367 558 aa12.2□□□□□ -0.46
PTPRF-205ENST00000414879 CCND1P24385 295 aa12.2□□□□□ -0.46
PTPRF-205ENST00000414879 INPP1P49441 399 aa12.2□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 49.6 ms