RNA–Protein interactions for RNA: ENST00000397053.6

UPF2-203, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 5 BASIC

Gene UPF2, Length 5,369 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-203ENST00000397053 IGDCC4Q8TDY8 1250 aa7.33□□□□□ -1.24
UPF2-203ENST00000397053 TPD52L3Q96J77 140 aa7.33□□□□□ -1.24
UPF2-203ENST00000397053 MAP3K14Q99558 947 aa7.33□□□□□ -1.24
UPF2-203ENST00000397053 UNKQ9C0B0 810 aaKnown RBP7.33□□□□□ -1.24
UPF2-203ENST00000397053 THAP2Q9H0W7 228 aa7.33□□□□□ -1.24
UPF2-203ENST00000397053 COMMD8Q9NX08 183 aa7.33□□□□□ -1.24
UPF2-203ENST00000397053 AP4S1Q9Y587 144 aa7.33□□□□□ -1.24
UPF2-203ENST00000397053 CNTNAP4Q9C0A0 1308 aa7.33□□□□□ -1.24
UPF2-203ENST00000397053 TRIM24O15164 1050 aa7.33□□□□□ -1.24
UPF2-203ENST00000397053 PGK1P00558 417 aa7.33□□□□□ -1.24
UPF2-203ENST00000397053 SLC35G4P0C7Q5 338 aa7.33□□□□□ -1.24
UPF2-203ENST00000397053 H2AFXP16104 143 aaPredicted RBP7.33□□□□□ -1.24
UPF2-203ENST00000397053 CYP2F1P24903 491 aa7.33□□□□□ -1.24
UPF2-203ENST00000397053 S100A3P33764 101 aa7.33□□□□□ -1.24
UPF2-203ENST00000397053 RPL4P36578 427 aaKnown RBP7.33□□□□□ -1.24
UPF2-203ENST00000397053 MAPK8P45983 427 aa7.33□□□□□ -1.24
UPF2-203ENST00000397053 GSSP48637 474 aa7.33□□□□□ -1.24
UPF2-203ENST00000397053 PSMC6P62333 389 aa7.33□□□□□ -1.24
UPF2-203ENST00000397053 ILF2Q12905 390 aaKnown RBP7.33□□□□□ -1.24
UPF2-203ENST00000397053 SLC29A2Q14542 456 aa7.33□□□□□ -1.24
UPF2-203ENST00000397053 TRIM16LQ309B1 348 aa7.33□□□□□ -1.24
UPF2-203ENST00000397053 FAM171BQ6P995 826 aa7.33□□□□□ -1.24
UPF2-203ENST00000397053 BNC2Q6ZN30 1099 aaPredicted RBP7.33□□□□□ -1.24
UPF2-203ENST00000397053 GPC2Q8N158 579 aa7.33□□□□□ -1.24
UPF2-203ENST00000397053 CACTIN-AS1Q8N1I8 211 aa7.33□□□□□ -1.24
UPF2-203ENST00000397053 STK40Q8N2I9 435 aa7.33□□□□□ -1.24
UPF2-203ENST00000397053 OR2W6PQ8NHA6 318 aa7.33□□□□□ -1.24
UPF2-203ENST00000397053 ADAM32Q8TC27 787 aa7.33□□□□□ -1.24
UPF2-203ENST00000397053 FIG4Q92562 907 aa7.33□□□□□ -1.24
UPF2-203ENST00000397053 PEG3Q9GZU2 1588 aa7.33□□□□□ -1.24
UPF2-203ENST00000397053 BTN3A1O00481 513 aa7.33□□□□□ -1.24
UPF2-203ENST00000397053 ZNF862O60290 1169 aa7.33□□□□□ -1.24
UPF2-203ENST00000397053 TFPIP10646 304 aa7.33□□□□□ -1.24
UPF2-203ENST00000397053 LBPP18428 481 aa7.33□□□□□ -1.24
UPF2-203ENST00000397053 ITPKBP27987 946 aa7.33□□□□□ -1.24
UPF2-203ENST00000397053 RANBP1P43487 201 aa7.33□□□□□ -1.24
UPF2-203ENST00000397053 CNGA2Q16280 664 aa7.33□□□□□ -1.24
UPF2-203ENST00000397053 ZNF470Q6ECI4 717 aa7.33□□□□□ -1.24
UPF2-203ENST00000397053 KRT74Q7RTS7 529 aa7.33□□□□□ -1.24
UPF2-203ENST00000397053 SPATA20Q8TB22 786 aa7.33□□□□□ -1.24
UPF2-203ENST00000397053 TAS1R2Q8TE23 839 aa7.33□□□□□ -1.24
UPF2-203ENST00000397053 ATL1Q8WXF7 558 aa7.33□□□□□ -1.24
UPF2-203ENST00000397053 ZNF354BQ96LW1 612 aa7.33□□□□□ -1.24
UPF2-203ENST00000397053 DEFB118Q96PH6 123 aa7.33□□□□□ -1.24
UPF2-203ENST00000397053 SLC4A9Q96Q91 983 aa7.33□□□□□ -1.24
UPF2-203ENST00000397053 SLC9A7Q96T83 725 aa7.33□□□□□ -1.24
UPF2-203ENST00000397053 IDI2Q9BXS1 227 aa7.33□□□□□ -1.24
UPF2-203ENST00000397053 TM6SF2Q9BZW4 377 aa7.33□□□□□ -1.24
UPF2-203ENST00000397053 POLR1EQ9GZS1 481 aaKnown RBP7.33□□□□□ -1.24
UPF2-203ENST00000397053 CYLDQ9NQC7 956 aa7.33□□□□□ -1.24
UPF2-203ENST00000397053 TMEM51Q9NW97 253 aa7.33□□□□□ -1.24
UPF2-203ENST00000397053 CLIC5Q9NZA1 410 aa7.33□□□□□ -1.24
UPF2-203ENST00000397053 STARD13Q9Y3M8 1113 aa7.33□□□□□ -1.24
UPF2-203ENST00000397053 MCIDASD6RGH6 385 aa7.33□□□□□ -1.24
UPF2-203ENST00000397053 KCNK1O00180 336 aa7.33□□□□□ -1.24
UPF2-203ENST00000397053 VAPBO95292 243 aa7.33□□□□□ -1.24
UPF2-203ENST00000397053 SGPL1O95470 568 aa7.33□□□□□ -1.24
UPF2-203ENST00000397053 LSM8O95777 96 aaKnown RBP7.33□□□□□ -1.24
UPF2-203ENST00000397053 YBX3P16989 372 aaKnown RBP eCLIP7.33□□□□□ -1.24
UPF2-203ENST00000397053 HOXC12P31275 282 aa7.33□□□□□ -1.24
UPF2-203ENST00000397053 PSMD4P55036 377 aaKnown RBP7.33□□□□□ -1.24
UPF2-203ENST00000397053 IRX1P78414 480 aaPredicted RBP7.33□□□□□ -1.24
UPF2-203ENST00000397053 MCL1Q07820 350 aa7.33□□□□□ -1.24
UPF2-203ENST00000397053 NDUFAF6Q330K2 333 aa7.33□□□□□ -1.24
UPF2-203ENST00000397053 FAM98BQ52LJ0 330 aaKnown RBP7.33□□□□□ -1.24
UPF2-203ENST00000397053 DDI2Q5TDH0 399 aa7.33□□□□□ -1.24
UPF2-203ENST00000397053 LRIG3Q6UXM1 1119 aa7.33□□□□□ -1.24
UPF2-203ENST00000397053 USP50Q70EL3 339 aaPredicted RBP7.33□□□□□ -1.24
UPF2-203ENST00000397053 FAM83AQ86UY5 434 aa7.33□□□□□ -1.24
UPF2-203ENST00000397053 ZNF410Q86VK4 478 aa7.33□□□□□ -1.24
UPF2-203ENST00000397053 C4orf19Q8IY42 314 aa7.33□□□□□ -1.24
UPF2-203ENST00000397053 SLC2A14Q8TDB8 520 aa7.33□□□□□ -1.24
UPF2-203ENST00000397053 ATG4AQ8WYN0 398 aa7.33□□□□□ -1.24
UPF2-203ENST00000397053 CENPIQ92674 756 aaPredicted RBP7.33□□□□□ -1.24
UPF2-203ENST00000397053 SENP8Q96LD8 212 aa7.33□□□□□ -1.24
UPF2-203ENST00000397053 NMRAL1Q9HBL8 299 aa7.33□□□□□ -1.24
UPF2-203ENST00000397053 SLC24A3Q9HC58 644 aa7.33□□□□□ -1.24
UPF2-203ENST00000397053 INTS7Q9NVH2 962 aaKnown RBP7.33□□□□□ -1.24
UPF2-203ENST00000397053 MTPAPQ9NVV4 582 aaKnown RBP eCLIP7.33□□□□□ -1.241e-7■□□□□ 11.2
UPF2-203ENST00000397053 FAM153AQ9UHL3 310 aa7.33□□□□□ -1.24
UPF2-203ENST00000397053 ZMYM5Q9UJ78 669 aa7.33□□□□□ -1.24
UPF2-203ENST00000397053 TMEM191CA6NGB0 347 aa7.32□□□□□ -1.24
UPF2-203ENST00000397053 RAD51CO43502 376 aa7.32□□□□□ -1.24
UPF2-203ENST00000397053 LTFP02788 710 aa7.32□□□□□ -1.24
UPF2-203ENST00000397053 IGFALSP35858 605 aa7.32□□□□□ -1.24
UPF2-203ENST00000397053 ADCYAP1R1P41586 468 aa7.32□□□□□ -1.24
UPF2-203ENST00000397053 ITGA1P56199 1179 aa7.32□□□□□ -1.24
UPF2-203ENST00000397053 ERVK-9P63128 1117 aa7.32□□□□□ -1.24
UPF2-203ENST00000397053 ERVK-24P63145 666 aa7.32□□□□□ -1.24
UPF2-203ENST00000397053 PPATQ06203 517 aa7.32□□□□□ -1.24
UPF2-203ENST00000397053 DDR2Q16832 855 aa7.32□□□□□ -1.24
UPF2-203ENST00000397053 TRIQKQ629K1 86 aa7.32□□□□□ -1.24
UPF2-203ENST00000397053 BHLHB9Q6PI77 547 aa7.32□□□□□ -1.24
UPF2-203ENST00000397053 SLC26A11Q86WA9 606 aa7.32□□□□□ -1.24
UPF2-203ENST00000397053 FLCNQ8NFG4 579 aa7.32□□□□□ -1.24
UPF2-203ENST00000397053 TBCBQ99426 244 aa7.32□□□□□ -1.24
UPF2-203ENST00000397053 SEPHS2Q99611 448 aa7.32□□□□□ -1.24
UPF2-203ENST00000397053 ZSWIM1Q9BR11 485 aa7.32□□□□□ -1.24
UPF2-203ENST00000397053 TTLL2Q9BWV7 592 aa7.32□□□□□ -1.24
UPF2-203ENST00000397053 CEP41Q9BYV8 373 aa7.32□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 85.1 ms