RNA–Protein interactions for RNA: ENST00000395684.5

SHMT1-205, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best)

Gene SHMT1, Length 2,652 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-205ENST00000395684 CCNYQ8ND76 341 aa13.01□□□□□ -0.33
SHMT1-205ENST00000395684 AGR3Q8TD06 166 aa13.01□□□□□ -0.33
SHMT1-205ENST00000395684 NCSTNQ92542 709 aa13.01□□□□□ -0.33
SHMT1-205ENST00000395684 C18orf25Q96B23 403 aaPredicted RBP13.01□□□□□ -0.33
SHMT1-205ENST00000395684 LENG8Q96PV6 779 aaPredicted RBP13.01□□□□□ -0.33
SHMT1-205ENST00000395684 OR52B2Q96RD2 323 aa13.01□□□□□ -0.33
SHMT1-205ENST00000395684 AGAP2Q99490 1192 aa13.01□□□□□ -0.33
SHMT1-205ENST00000395684 NAT9Q9BTE0 207 aa13.01□□□□□ -0.33
SHMT1-205ENST00000395684 CDH19Q9H159 772 aa13.01□□□□□ -0.33
SHMT1-205ENST00000395684 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP13.01□□□□□ -0.33
SHMT1-205ENST00000395684 ARHGAP26Q9UNA1 814 aa13.01□□□□□ -0.33
SHMT1-205ENST00000395684 DNAJC25-GNG10A0A024R161 153 aa13.01□□□□□ -0.33
SHMT1-205ENST00000395684 PALM2-AKAP2B1ALY0 433 aaPredicted RBP13.01□□□□□ -0.33
SHMT1-205ENST00000395684 USP12O75317 370 aa13.01□□□□□ -0.33
SHMT1-205ENST00000395684 GLUD2P49448 558 aa13.01□□□□□ -0.33
SHMT1-205ENST00000395684 IRF9Q00978 393 aa13.01□□□□□ -0.33
SHMT1-205ENST00000395684 BST2Q10589 180 aaKnown RBP13.01□□□□□ -0.33
SHMT1-205ENST00000395684 GRM2Q14416 872 aa13.01□□□□□ -0.33
SHMT1-205ENST00000395684 CCDC153Q494R4 210 aa13.01□□□□□ -0.33
SHMT1-205ENST00000395684 MMEL1Q495T6 779 aa13.01□□□□□ -0.33
SHMT1-205ENST00000395684 FSTL4Q6MZW2 842 aa13.01□□□□□ -0.33
SHMT1-205ENST00000395684 FBXL19Q6PCT2 694 aa13.01□□□□□ -0.33
SHMT1-205ENST00000395684 ST13P4Q8IZP2 240 aaPredicted RBP13.01□□□□□ -0.33
SHMT1-205ENST00000395684 ARHGAP18Q8N392 663 aa13.01□□□□□ -0.33
SHMT1-205ENST00000395684 OR52K1Q8NGK4 314 aa13.01□□□□□ -0.33
SHMT1-205ENST00000395684 MPHOSPH6Q99547 160 aaKnown RBP13.01□□□□□ -0.33
SHMT1-205ENST00000395684 CPNE1Q99829 537 aa13.01□□□□□ -0.33
SHMT1-205ENST00000395684 PRDM12Q9H4Q4 367 aa13.01□□□□□ -0.33
SHMT1-205ENST00000395684 CAB39LQ9H9S4 337 aa13.01□□□□□ -0.33
SHMT1-205ENST00000395684 GJD2Q9UKL4 321 aa13.01□□□□□ -0.33
SHMT1-205ENST00000395684 CASQ2O14958 399 aaPredicted RBP13□□□□□ -0.33
SHMT1-205ENST00000395684 HSPA4LO95757 839 aa13□□□□□ -0.33
SHMT1-205ENST00000395684 LGALS2P05162 132 aa13□□□□□ -0.33
SHMT1-205ENST00000395684 GRM5P41594 1212 aa13□□□□□ -0.33
SHMT1-205ENST00000395684 RPL34P49207 117 aaKnown RBP13□□□□□ -0.33
SHMT1-205ENST00000395684 XIAPP98170 497 aa13□□□□□ -0.33
SHMT1-205ENST00000395684 GLRA4Q5JXX5 417 aa13□□□□□ -0.33
SHMT1-205ENST00000395684 STRADAQ7RTN6 431 aa13□□□□□ -0.33
SHMT1-205ENST00000395684 STRA8Q7Z7C7 330 aa13□□□□□ -0.33
SHMT1-205ENST00000395684 DEFB106AQ8N104 65 aa13□□□□□ -0.33
SHMT1-205ENST00000395684 ISL2Q96A47 359 aa13□□□□□ -0.33
SHMT1-205ENST00000395684 RBBP8Q99708 897 aa13□□□□□ -0.33
SHMT1-205ENST00000395684 CENPKQ9BS16 269 aa13□□□□□ -0.33
SHMT1-205ENST00000395684 VCX3BQ9H321 246 aa13□□□□□ -0.33
SHMT1-205ENST00000395684 DMAP1Q9NPF5 467 aaPredicted RBP13□□□□□ -0.33
SHMT1-205ENST00000395684 ACSS2Q9NR19 701 aa13□□□□□ -0.33
SHMT1-205ENST00000395684 SNTG2Q9NY99 539 aa13□□□□□ -0.33
SHMT1-205ENST00000395684 CDY2AQ9Y6F7 541 aa13□□□□□ -0.33
SHMT1-205ENST00000395684 CDY1Q9Y6F8 540 aa13□□□□□ -0.33
SHMT1-205ENST00000395684 KCNK1O00180 336 aa13□□□□□ -0.33
SHMT1-205ENST00000395684 IRF6O14896 467 aa13□□□□□ -0.33
SHMT1-205ENST00000395684 STK10O94804 968 aaKnown RBP13□□□□□ -0.33
SHMT1-205ENST00000395684 ETS2P15036 469 aa13□□□□□ -0.33
SHMT1-205ENST00000395684 GARSP41250 739 aaKnown RBP13□□□□□ -0.33
SHMT1-205ENST00000395684 ACVR1CQ8NER5 493 aa13□□□□□ -0.33
SHMT1-205ENST00000395684 RNF139Q8WU17 664 aa13□□□□□ -0.33
SHMT1-205ENST00000395684 AGAP3Q96P47 875 aa13□□□□□ -0.33
SHMT1-205ENST00000395684 GORASP1Q9BQQ3 440 aa13□□□□□ -0.33
SHMT1-205ENST00000395684 RTKNQ9BST9 563 aa13□□□□□ -0.33
SHMT1-205ENST00000395684 ETAA1Q9NY74 926 aa13□□□□□ -0.33
SHMT1-205ENST00000395684 HES2Q9Y543 173 aa13□□□□□ -0.33
SHMT1-205ENST00000395684 MCM3APO60318 1980 aa12.99□□□□□ -0.33
SHMT1-205ENST00000395684 SYNJ2BP-COX16A0A087WUM0 186 aa12.99□□□□□ -0.33
SHMT1-205ENST00000395684 A0A096LPK6 155 aa12.99□□□□□ -0.33
SHMT1-205ENST00000395684 GOLGA8QA0A0J9YX86 632 aa12.99□□□□□ -0.33
SHMT1-205ENST00000395684 GOLGA8OA6NCC3 632 aa12.99□□□□□ -0.33
SHMT1-205ENST00000395684 GOLGA8NF8WBI6 632 aa12.99□□□□□ -0.33
SHMT1-205ENST00000395684 LTFP02788 710 aa12.99□□□□□ -0.33
SHMT1-205ENST00000395684 PABPC4LP0CB38 370 aaKnown RBP12.99□□□□□ -0.33
SHMT1-205ENST00000395684 GLDCP23378 1020 aa12.99□□□□□ -0.33
SHMT1-205ENST00000395684 PRDX6P30041 224 aa12.99□□□□□ -0.33
SHMT1-205ENST00000395684 SERPINB5P36952 375 aa12.99□□□□□ -0.33
SHMT1-205ENST00000395684 MATKP42679 507 aa12.99□□□□□ -0.33
SHMT1-205ENST00000395684 BCAT1P54687 386 aa12.99□□□□□ -0.33
SHMT1-205ENST00000395684 ARHGAP1Q07960 439 aa12.99□□□□□ -0.33
SHMT1-205ENST00000395684 TTLL4Q14679 1199 aa12.99□□□□□ -0.33
SHMT1-205ENST00000395684 PDK3Q15120 406 aa12.99□□□□□ -0.33
SHMT1-205ENST00000395684 ZBTB6Q15916 424 aa12.99□□□□□ -0.33
SHMT1-205ENST00000395684 FSCBQ5H9T9 825 aa12.99□□□□□ -0.33
SHMT1-205ENST00000395684 SPANXN3Q5MJ09 141 aa12.99□□□□□ -0.33
SHMT1-205ENST00000395684 ZNF618Q5T7W0 954 aa12.99□□□□□ -0.33
SHMT1-205ENST00000395684 OTUD1Q5VV17 481 aaPredicted RBP12.99□□□□□ -0.33
SHMT1-205ENST00000395684 UGT2A3Q6UWM9 527 aa12.99□□□□□ -0.33
SHMT1-205ENST00000395684 PID1Q7Z2X4 250 aa12.99□□□□□ -0.33
SHMT1-205ENST00000395684 UNC93AQ86WB7 457 aa12.99□□□□□ -0.33
SHMT1-205ENST00000395684 NME8Q8N427 588 aa12.99□□□□□ -0.33
SHMT1-205ENST00000395684 KBTBD7Q8WVZ9 684 aa12.99□□□□□ -0.33
SHMT1-205ENST00000395684 COX16Q9P0S2 106 aa12.99□□□□□ -0.33
SHMT1-205ENST00000395684 RBPJLQ9UBG7 517 aa12.99□□□□□ -0.33
SHMT1-205ENST00000395684 SSX2IPQ9Y2D8 614 aa12.99□□□□□ -0.33
SHMT1-205ENST00000395684 INPP5FQ9Y2H2 1132 aa12.99□□□□□ -0.33
SHMT1-205ENST00000395684 ZCWPW2A0A1B0GU75 182 aa12.99□□□□□ -0.33
SHMT1-205ENST00000395684 CAPN8A6NHC0 703 aa12.99□□□□□ -0.33
SHMT1-205ENST00000395684 CREB3O43889 395 aa12.99□□□□□ -0.33
SHMT1-205ENST00000395684 ZNF286BP0CG31 522 aa12.99□□□□□ -0.33
SHMT1-205ENST00000395684 CYP2C8P10632 490 aa12.99□□□□□ -0.33
SHMT1-205ENST00000395684 SPRP35270 261 aaPredicted RBP12.99□□□□□ -0.33
SHMT1-205ENST00000395684 SCNN1AP37088 669 aa12.99□□□□□ -0.33
SHMT1-205ENST00000395684 NUMBP49757 651 aa12.99□□□□□ -0.33
SHMT1-205ENST00000395684 SULT1E1P49888 294 aa12.99□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms