RNA–Protein interactions for RNA: ENST00000299138.11

VPS35-201, Transcript of VPS35, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS35, Length 6,790 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-201ENST00000299138 PCDHGC3Q9UN70 934 aa6.55□□□□□ -1.36
VPS35-201ENST00000299138 PHF24Q9UPV7 400 aa6.55□□□□□ -1.36
VPS35-201ENST00000299138 PCDHA10Q9Y5I2 948 aa6.55□□□□□ -1.36
VPS35-201ENST00000299138 PMF1-BGLAPU3KQ54 211 aa6.55□□□□□ -1.36
VPS35-201ENST00000299138 C15orf38-AP3S2A0A0A6YYH1 394 aa6.54□□□□□ -1.36
VPS35-201ENST00000299138 SLITRK3O94933 977 aa6.54□□□□□ -1.36
VPS35-201ENST00000299138 ZBED1O96006 694 aa6.54□□□□□ -1.36
VPS35-201ENST00000299138 SRGAP2CP0DJJ0 459 aa6.54□□□□□ -1.36
VPS35-201ENST00000299138 NCK1P16333 377 aa6.54□□□□□ -1.36
VPS35-201ENST00000299138 KLRC2P26717 231 aa6.54□□□□□ -1.36
VPS35-201ENST00000299138 ALDH6A1Q02252 535 aaKnown RBP6.54□□□□□ -1.36
VPS35-201ENST00000299138 PRKD1Q15139 912 aaPredicted RBP6.54□□□□□ -1.36
VPS35-201ENST00000299138 STXBP2Q15833 593 aa6.54□□□□□ -1.36
VPS35-201ENST00000299138 ZACNQ401N2 412 aa6.54□□□□□ -1.36
VPS35-201ENST00000299138 DSTYKQ6XUX3 929 aa6.54□□□□□ -1.36
VPS35-201ENST00000299138 ARPINQ7Z6K5 226 aa6.54□□□□□ -1.36
VPS35-201ENST00000299138 TRIM74Q86UV6 250 aa6.54□□□□□ -1.36
VPS35-201ENST00000299138 TRIM73Q86UV7 250 aa6.54□□□□□ -1.36
VPS35-201ENST00000299138 PPM1NQ8N819 430 aa6.54□□□□□ -1.36
VPS35-201ENST00000299138 UNKQ9C0B0 810 aaKnown RBP6.54□□□□□ -1.36
VPS35-201ENST00000299138 ANKHQ9HCJ1 492 aa6.54□□□□□ -1.36
VPS35-201ENST00000299138 S100A14Q9HCY8 104 aa6.54□□□□□ -1.36
VPS35-201ENST00000299138 GABBR1Q9UBS5 961 aa6.54□□□□□ -1.36
VPS35-201ENST00000299138 HESX1Q9UBX0 185 aa6.54□□□□□ -1.36
VPS35-201ENST00000299138 SLC9A2Q9UBY0 812 aa6.54□□□□□ -1.36
VPS35-201ENST00000299138 NUP50Q9UKX7 468 aa6.54□□□□□ -1.36
VPS35-201ENST00000299138 PCDHGB4Q9UN71 923 aa6.54□□□□□ -1.36
VPS35-201ENST00000299138 SSNA1O43805 119 aa6.54□□□□□ -1.36
VPS35-201ENST00000299138 PSMB9P28065 219 aa6.54□□□□□ -1.36
VPS35-201ENST00000299138 NMT1P30419 496 aaKnown RBP6.54□□□□□ -1.36
VPS35-201ENST00000299138 OAZ1P54368 228 aa6.54□□□□□ -1.36
VPS35-201ENST00000299138 OSTNP61366 133 aa6.54□□□□□ -1.36
VPS35-201ENST00000299138 RFTN1Q14699 578 aaPredicted RBP6.54□□□□□ -1.36
VPS35-201ENST00000299138 ITPRIPL1Q6GPH6 555 aa6.54□□□□□ -1.36
VPS35-201ENST00000299138 ISLR2Q6UXK2 745 aa6.54□□□□□ -1.36
VPS35-201ENST00000299138 SAPCD2Q86UD0 394 aa6.54□□□□□ -1.36
VPS35-201ENST00000299138 CHCHD4Q8N4Q1 142 aa6.54□□□□□ -1.36
VPS35-201ENST00000299138 RBM15BQ8NDT2 890 aaKnown RBP6.54□□□□□ -1.36
VPS35-201ENST00000299138 ACTRT2Q8TDY3 377 aa6.54□□□□□ -1.36
VPS35-201ENST00000299138 GAL3ST3Q96A11 431 aa6.54□□□□□ -1.36
VPS35-201ENST00000299138 IFT43Q96FT9 208 aa6.54□□□□□ -1.36
VPS35-201ENST00000299138 ZDHHC15Q96MV8 337 aa6.54□□□□□ -1.36
VPS35-201ENST00000299138 TRIM62Q9BVG3 475 aa6.54□□□□□ -1.36
VPS35-201ENST00000299138 XPO5Q9HAV4 1204 aaKnown RBP eCLIP6.54□□□□□ -1.36
VPS35-201ENST00000299138 PNPLA3Q9NST1 481 aa6.54□□□□□ -1.36
VPS35-201ENST00000299138 TOGARAM1Q9Y4F4 1720 aa6.54□□□□□ -1.36
VPS35-201ENST00000299138 NCAM2O15394 837 aa6.54□□□□□ -1.36
VPS35-201ENST00000299138 BAG6P46379 1132 aa6.54□□□□□ -1.36
VPS35-201ENST00000299138 MSLNQ13421 630 aaPredicted RBP6.54□□□□□ -1.36
VPS35-201ENST00000299138 NFIXQ14938 502 aa6.54□□□□□ -1.36
VPS35-201ENST00000299138 SIX1Q15475 284 aaPredicted RBP6.54□□□□□ -1.36
VPS35-201ENST00000299138 FAM160B1Q5W0V3 765 aa6.54□□□□□ -1.36
VPS35-201ENST00000299138 PACS1Q6VY07 963 aa6.54□□□□□ -1.36
VPS35-201ENST00000299138 ILDR2Q71H61 639 aa6.54□□□□□ -1.36
VPS35-201ENST00000299138 CLHC1Q8NHS4 586 aa6.54□□□□□ -1.36
VPS35-201ENST00000299138 SYTL5Q8TDW5 730 aaPredicted RBP6.54□□□□□ -1.36
VPS35-201ENST00000299138 PDCD6IPQ8WUM4 868 aaKnown RBP6.54□□□□□ -1.36
VPS35-201ENST00000299138 SLC7A3Q8WY07 619 aa6.54□□□□□ -1.36
VPS35-201ENST00000299138 S100PBPQ96BU1 408 aa6.54□□□□□ -1.36
VPS35-201ENST00000299138 COPS7BQ9H9Q2 264 aaPredicted RBP6.54□□□□□ -1.36
VPS35-201ENST00000299138 ERAP1Q9NZ08 941 aa6.54□□□□□ -1.36
VPS35-201ENST00000299138 TMED5Q9Y3A6 229 aa6.54□□□□□ -1.36
VPS35-201ENST00000299138 SNAP23O00161 211 aa6.54□□□□□ -1.36
VPS35-201ENST00000299138 MED26O95402 600 aa6.54□□□□□ -1.36
VPS35-201ENST00000299138 VIL1P09327 827 aaKnown RBP6.54□□□□□ -1.36
VPS35-201ENST00000299138 CRHR1P34998 444 aa6.54□□□□□ -1.36
VPS35-201ENST00000299138 ADAM17P78536 824 aa6.54□□□□□ -1.36
VPS35-201ENST00000299138 TRAF2Q12933 501 aa6.54□□□□□ -1.36
VPS35-201ENST00000299138 PRKAA1Q13131 559 aa6.54□□□□□ -1.36
VPS35-201ENST00000299138 PLA2G4EQ3MJ16 856 aa6.54□□□□□ -1.36
VPS35-201ENST00000299138 CCDC157Q569K6 752 aa6.54□□□□□ -1.36
VPS35-201ENST00000299138 C6orf10Q5SRN2 563 aa6.54□□□□□ -1.36
VPS35-201ENST00000299138 TYW3Q6IPR3 259 aaKnown RBP6.54□□□□□ -1.36
VPS35-201ENST00000299138 PROSER1Q86XN7 944 aa6.54□□□□□ -1.36
VPS35-201ENST00000299138 CACTIN-AS1Q8N1I8 211 aa6.54□□□□□ -1.36
VPS35-201ENST00000299138 CNTD1Q8N815 330 aa6.54□□□□□ -1.36
VPS35-201ENST00000299138 CNDP2Q96KP4 475 aaKnown RBP6.54□□□□□ -1.36
VPS35-201ENST00000299138 YME1L1Q96TA2 773 aa6.54□□□□□ -1.36
VPS35-201ENST00000299138 NUDT12Q9BQG2 462 aa6.54□□□□□ -1.36
VPS35-201ENST00000299138 C11orf70Q9BRQ4 267 aa6.54□□□□□ -1.36
VPS35-201ENST00000299138 TMEM134Q9H6X4 195 aa6.54□□□□□ -1.36
VPS35-201ENST00000299138 CD320Q9NPF0 282 aa6.54□□□□□ -1.36
VPS35-201ENST00000299138 PCDH12Q9NPG4 1184 aa6.54□□□□□ -1.36
VPS35-201ENST00000299138 RAD18Q9NS91 495 aa6.54□□□□□ -1.36
VPS35-201ENST00000299138 LMCD1Q9NZU5 365 aa6.54□□□□□ -1.36
VPS35-201ENST00000299138 hCG_1818297A0A087WSY0 165 aa6.54□□□□□ -1.36
VPS35-201ENST00000299138 UNGP13051 313 aaPredicted RBP6.54□□□□□ -1.36
VPS35-201ENST00000299138 ALOX15P16050 662 aaPredicted RBP6.54□□□□□ -1.36
VPS35-201ENST00000299138 PSMA3P25788 255 aa6.54□□□□□ -1.36
VPS35-201ENST00000299138 STAT3P40763 770 aa6.54□□□□□ -1.36
VPS35-201ENST00000299138 TUBA1BP68363 451 aa6.54□□□□□ -1.36
VPS35-201ENST00000299138 NCF4Q15080 339 aa6.54□□□□□ -1.36
VPS35-201ENST00000299138 AASDHQ4L235 1098 aaPredicted RBP6.54□□□□□ -1.36
VPS35-201ENST00000299138 PDCD4Q53EL6 469 aaKnown RBP6.54□□□□□ -1.36
VPS35-201ENST00000299138 OR52E8Q6IFG1 317 aa6.54□□□□□ -1.36
VPS35-201ENST00000299138 PKN3Q6P5Z2 889 aa6.54□□□□□ -1.36
VPS35-201ENST00000299138 C3orf62Q6ZUJ4 267 aa6.54□□□□□ -1.36
VPS35-201ENST00000299138 TUBA1AQ71U36 451 aa6.54□□□□□ -1.36
VPS35-201ENST00000299138 LMO3Q8TAP4 145 aa6.54□□□□□ -1.36
VPS35-201ENST00000299138 TCP10LQ8TDR4 215 aa6.54□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms