RNA–Protein interactions for RNA: ENST00000287008.7

PCDH1-201, Transcript of protocadherin 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene PCDH1, Length 4,793 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1-201ENST00000287008 ZSCAN5CA6NGD5 496 aaPredicted RBP18.9■□□□□ 0.62
PCDH1-201ENST00000287008 LRRC38Q5VT99 294 aa18.9■□□□□ 0.62
PCDH1-201ENST00000287008 LRRC49Q8IUZ0 686 aa18.9■□□□□ 0.62
PCDH1-201ENST00000287008 OSBPL1AQ9BXW6 950 aa18.9■□□□□ 0.62
PCDH1-201ENST00000287008 SPATS2LQ9NUQ6 558 aaKnown RBP18.9■□□□□ 0.62
PCDH1-201ENST00000287008 A8MX80 341 aa18.9■□□□□ 0.62
PCDH1-201ENST00000287008 TFE3P19532 575 aaPredicted RBP18.9■□□□□ 0.62
PCDH1-201ENST00000287008 SLC45A4Q5BKX6 768 aa18.9■□□□□ 0.62
PCDH1-201ENST00000287008 NEPROQ6NW34 567 aa18.9■□□□□ 0.62
PCDH1-201ENST00000287008 HJURPQ8NCD3 748 aaPredicted RBP18.9■□□□□ 0.62
PCDH1-201ENST00000287008 LRRC39Q96DD0 335 aa18.9■□□□□ 0.62
PCDH1-201ENST00000287008 MYCBPQ99417 103 aaPredicted RBP18.9■□□□□ 0.62
PCDH1-201ENST00000287008 SH3GL1Q99961 368 aa18.9■□□□□ 0.62
PCDH1-201ENST00000287008 PADI4Q9UM07 663 aa18.9■□□□□ 0.62
PCDH1-201ENST00000287008 BCL9LQ86UU0 1499 aa18.9■□□□□ 0.62
PCDH1-201ENST00000287008 A0A096LPK6 155 aa18.89■□□□□ 0.62
PCDH1-201ENST00000287008 SKP1P63208 163 aa18.89■□□□□ 0.62
PCDH1-201ENST00000287008 KCNA10Q16322 511 aa18.89■□□□□ 0.62
PCDH1-201ENST00000287008 KIAA1324Q6UXG2 1013 aaKnown RBP18.89■□□□□ 0.62
PCDH1-201ENST00000287008 ZBTB14O43829 449 aa18.89■□□□□ 0.61
PCDH1-201ENST00000287008 CAPN15O75808 1086 aa18.89■□□□□ 0.61
PCDH1-201ENST00000287008 SSTR1P30872 391 aa18.89■□□□□ 0.61
PCDH1-201ENST00000287008 SMARCB1Q12824 385 aa18.89■□□□□ 0.61
PCDH1-201ENST00000287008 MAMLD1Q13495 774 aa18.89■□□□□ 0.61
PCDH1-201ENST00000287008 FUT11Q495W5 492 aa18.89■□□□□ 0.61
PCDH1-201ENST00000287008 FAM35AQ86V20 835 aa18.89■□□□□ 0.61
PCDH1-201ENST00000287008 MON1AQ86VX9 555 aa18.89■□□□□ 0.61
PCDH1-201ENST00000287008 BTN2A2Q8WVV5 523 aa18.89■□□□□ 0.61
PCDH1-201ENST00000287008 MLPHQ9BV36 600 aaPredicted RBP18.89■□□□□ 0.61
PCDH1-201ENST00000287008 SNRNP25Q9BV90 132 aaKnown RBP18.89■□□□□ 0.61
PCDH1-201ENST00000287008 UNKQ9C0B0 810 aaKnown RBP18.89■□□□□ 0.61
PCDH1-201ENST00000287008 PADI3Q9ULW8 664 aa18.89■□□□□ 0.61
PCDH1-201ENST00000287008 CES2O00748 559 aa18.89■□□□□ 0.61
PCDH1-201ENST00000287008 TM9SF1O15321 606 aa18.89■□□□□ 0.61
PCDH1-201ENST00000287008 SEPT4O43236 478 aa18.89■□□□□ 0.61
PCDH1-201ENST00000287008 KRT20P35900 424 aa18.89■□□□□ 0.61
PCDH1-201ENST00000287008 GLUD2P49448 558 aa18.89■□□□□ 0.61
PCDH1-201ENST00000287008 HIRAP54198 1017 aaPredicted RBP18.89■□□□□ 0.61
PCDH1-201ENST00000287008 CES3Q6UWW8 571 aa18.89■□□□□ 0.61
PCDH1-201ENST00000287008 RNF168Q8IYW5 571 aaPredicted RBP18.89■□□□□ 0.61
PCDH1-201ENST00000287008 CYGBQ8WWM9 190 aa18.89■□□□□ 0.61
PCDH1-201ENST00000287008 PDE2AO00408 941 aaPredicted RBP18.89■□□□□ 0.61
PCDH1-201ENST00000287008 CCNE2O96020 404 aa18.89■□□□□ 0.61
PCDH1-201ENST00000287008 BLVRAP53004 296 aa18.89■□□□□ 0.61
PCDH1-201ENST00000287008 PRMT2P55345 433 aa18.89■□□□□ 0.61
PCDH1-201ENST00000287008 NFYCQ13952 458 aa18.89■□□□□ 0.61
PCDH1-201ENST00000287008 TARBP2Q15633 366 aaKnown RBP18.89■□□□□ 0.61
PCDH1-201ENST00000287008 BBS2Q9BXC9 721 aa18.89■□□□□ 0.61
PCDH1-201ENST00000287008 IMPAD1Q9NX62 359 aa18.89■□□□□ 0.61
PCDH1-201ENST00000287008 NAALADL1Q9UQQ1 740 aa18.89■□□□□ 0.61
PCDH1-201ENST00000287008 A0A0B4J269 797 aa18.88■□□□□ 0.61
PCDH1-201ENST00000287008 CPSF4O95639 269 aaKnown RBP18.88■□□□□ 0.61
PCDH1-201ENST00000287008 CDC25CP30307 473 aa18.88■□□□□ 0.61
PCDH1-201ENST00000287008 SERPINB5P36952 375 aa18.88■□□□□ 0.61
PCDH1-201ENST00000287008 DDR2Q16832 855 aa18.88■□□□□ 0.61
PCDH1-201ENST00000287008 METTL3Q86U44 580 aaKnown RBP18.88■□□□□ 0.61
PCDH1-201ENST00000287008 MAGEB18Q96M61 343 aa18.88■□□□□ 0.61
PCDH1-201ENST00000287008 TLE6Q9H808 572 aa18.88■□□□□ 0.61
PCDH1-201ENST00000287008 DNAJC18Q9H819 358 aa18.88■□□□□ 0.61
PCDH1-201ENST00000287008 DERAQ9Y315 318 aa18.88■□□□□ 0.61
PCDH1-201ENST00000287008 A0A0A0MRY4 1105 aa18.88■□□□□ 0.61
PCDH1-201ENST00000287008 H3BMM5 538 aa18.88■□□□□ 0.61
PCDH1-201ENST00000287008 TRIM13O60858 407 aa18.88■□□□□ 0.61
PCDH1-201ENST00000287008 TNNI3P19429 210 aa18.88■□□□□ 0.61
PCDH1-201ENST00000287008 GABRR2P28476 465 aa18.88■□□□□ 0.61
PCDH1-201ENST00000287008 AQP5P55064 265 aa18.88■□□□□ 0.61
PCDH1-201ENST00000287008 CHRNB3Q05901 458 aa18.88■□□□□ 0.61
PCDH1-201ENST00000287008 CCDC85BQ15834 202 aaPredicted RBP18.88■□□□□ 0.61
PCDH1-201ENST00000287008 LLGL2Q6P1M3 1020 aa18.88■□□□□ 0.61
PCDH1-201ENST00000287008 AHCYL2Q96HN2 611 aaKnown RBP18.88■□□□□ 0.61
PCDH1-201ENST00000287008 SPATA13Q96N96 652 aa18.88■□□□□ 0.61
PCDH1-201ENST00000287008 BTBD7Q9P203 1132 aa18.88■□□□□ 0.61
PCDH1-201ENST00000287008 TREHO43280 583 aa18.88■□□□□ 0.61
PCDH1-201ENST00000287008 ZNF862O60290 1169 aa18.88■□□□□ 0.61
PCDH1-201ENST00000287008 MT-CO1P00395 513 aa18.88■□□□□ 0.61
PCDH1-201ENST00000287008 PGS1Q32NB8 556 aa18.88■□□□□ 0.61
PCDH1-201ENST00000287008 SDHAF4Q5VUM1 108 aa18.88■□□□□ 0.61
PCDH1-201ENST00000287008 CHMP1BQ7LBR1 199 aa18.88■□□□□ 0.61
PCDH1-201ENST00000287008 KIF2BQ8N4N8 673 aa18.88■□□□□ 0.61
PCDH1-201ENST00000287008 CXorf40AQ8TE69 158 aa18.88■□□□□ 0.61
PCDH1-201ENST00000287008 MAML3Q96JK9 1138 aa18.88■□□□□ 0.61
PCDH1-201ENST00000287008 OLFM3Q96PB7 478 aa18.88■□□□□ 0.61
PCDH1-201ENST00000287008 NLNQ9BYT8 704 aa18.88■□□□□ 0.61
PCDH1-201ENST00000287008 VAV3Q9UKW4 847 aa18.88■□□□□ 0.61
PCDH1-201ENST00000287008 BMP10O95393 424 aa18.88■□□□□ 0.61
PCDH1-201ENST00000287008 ZNF280AP59817 542 aaPredicted RBP18.88■□□□□ 0.61
PCDH1-201ENST00000287008 INSCQ1MX18 579 aa18.88■□□□□ 0.61
PCDH1-201ENST00000287008 BMT2Q1RMZ1 405 aa18.88■□□□□ 0.61
PCDH1-201ENST00000287008 N4BP2L1Q5TBK1 243 aaPredicted RBP18.88■□□□□ 0.61
PCDH1-201ENST00000287008 KDM7AQ6ZMT4 941 aa18.88■□□□□ 0.61
PCDH1-201ENST00000287008 RBM23Q86U06 439 aaKnown RBP18.88■□□□□ 0.61
PCDH1-201ENST00000287008 CPNE1Q99829 537 aa18.88■□□□□ 0.61
PCDH1-201ENST00000287008 ATP13A3Q9H7F0 1226 aa18.88■□□□□ 0.61
PCDH1-201ENST00000287008 RAD18Q9NS91 495 aa18.88■□□□□ 0.61
PCDH1-201ENST00000287008 SH3BP4Q9P0V3 963 aa18.88■□□□□ 0.61
PCDH1-201ENST00000287008 TRPC4Q9UBN4 977 aa18.88■□□□□ 0.61
PCDH1-201ENST00000287008 TMCC3Q9ULS5 477 aa18.88■□□□□ 0.61
PCDH1-201ENST00000287008 TBL1XO60907 577 aa18.87■□□□□ 0.61
PCDH1-201ENST00000287008 IFNA14P01570 189 aa18.87■□□□□ 0.61
PCDH1-201ENST00000287008 TYMPP19971 482 aa18.87■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 46.5 ms