RNA–Protein interactions for RNA: ENST00000642141.1

SCN1A-222, Transcript of sodium voltage-gated channel alpha subunit 1, human

Gene SCN1A, Length 921 nt, Biotype processed transcript, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SCN1A-222	ENST00000642141	FAM114A1	Q8IWE2	563 aa		10.65	□□□□□ -0.7
SCN1A-222	ENST00000642141	APCDD1	Q8J025	514 aa		10.65	□□□□□ -0.7
SCN1A-222	ENST00000642141	DDX51	Q8N8A6	666 aa	Known RBP eCLIP	10.65	□□□□□ -0.7
SCN1A-222	ENST00000642141	FOXJ1	Q92949	421 aa		10.65	□□□□□ -0.7
SCN1A-222	ENST00000642141	AZIN2	Q96A70	460 aa		10.65	□□□□□ -0.7
SCN1A-222	ENST00000642141	PDCL3	Q9H2J4	239 aa		10.65	□□□□□ -0.7
SCN1A-222	ENST00000642141	IL21R	Q9HBE5	538 aa		10.65	□□□□□ -0.7
SCN1A-222	ENST00000642141	LMBRD1	Q9NUN5	540 aa		10.65	□□□□□ -0.7
SCN1A-222	ENST00000642141	TAB2	Q9NYJ8	693 aa		10.65	□□□□□ -0.7
SCN1A-222	ENST00000642141	SLCO3A1	Q9UIG8	710 aa		10.65	□□□□□ -0.7
SCN1A-222	ENST00000642141	SNX10	Q9Y5X0	201 aa		10.65	□□□□□ -0.7
SCN1A-222	ENST00000642141	FHOD1	Q9Y613	1164 aa		10.65	□□□□□ -0.7
SCN1A-222	ENST00000642141	TNRC6B	Q9UPQ9	1833 aa	Known RBP	10.65	□□□□□ -0.71
SCN1A-222	ENST00000642141	CNOT1	A5YKK6	2376 aa	Known RBP	10.65	□□□□□ -0.71
SCN1A-222	ENST00000642141	CEP192	Q8TEP8	1941 aa		10.64	□□□□□ -0.71
SCN1A-222	ENST00000642141	METTL12	A8MUP2	240 aa		10.64	□□□□□ -0.71
SCN1A-222	ENST00000642141	KCNU1	A8MYU2	1149 aa		10.64	□□□□□ -0.71
SCN1A-222	ENST00000642141		F5H5T6	163 aa		10.64	□□□□□ -0.71
SCN1A-222	ENST00000642141	OPHN1	O60890	802 aa		10.64	□□□□□ -0.71
SCN1A-222	ENST00000642141	SIN3B	O75182	1162 aa		10.64	□□□□□ -0.71
SCN1A-222	ENST00000642141	KRT37	O76014	449 aa		10.64	□□□□□ -0.71
SCN1A-222	ENST00000642141	FSBP	O95073	299 aa		10.64	□□□□□ -0.71
SCN1A-222	ENST00000642141	LUC7L3	O95232	432 aa	Known RBP	10.64	□□□□□ -0.71
SCN1A-222	ENST00000642141	IGLV3-25	P01717	112 aa		10.64	□□□□□ -0.71
SCN1A-222	ENST00000642141	DNTT	P04053	509 aa		10.64	□□□□□ -0.71
SCN1A-222	ENST00000642141	SYP	P08247	313 aa		10.64	□□□□□ -0.71
SCN1A-222	ENST00000642141	CEACAM1	P13688	526 aa		10.64	□□□□□ -0.71
SCN1A-222	ENST00000642141	VAV1	P15498	845 aa		10.64	□□□□□ -0.71
SCN1A-222	ENST00000642141	PDGFRA	P16234	1089 aa		10.64	□□□□□ -0.71
SCN1A-222	ENST00000642141	TFE3	P19532	575 aa	Predicted RBP	10.64	□□□□□ -0.71
SCN1A-222	ENST00000642141	MZF1	P28698	734 aa	Predicted RBP	10.64	□□□□□ -0.71
SCN1A-222	ENST00000642141	HOXD12	P35452	270 aa		10.64	□□□□□ -0.71
SCN1A-222	ENST00000642141	DPP6	P42658	865 aa		10.64	□□□□□ -0.71
SCN1A-222	ENST00000642141	CSNK1E	P49674	416 aa	Known RBP	10.64	□□□□□ -0.71
SCN1A-222	ENST00000642141	STK19	P49842	368 aa	Predicted RBP	10.64	□□□□□ -0.71
SCN1A-222	ENST00000642141	KLK7	P49862	253 aa		10.64	□□□□□ -0.71
SCN1A-222	ENST00000642141	IRAK1	P51617	712 aa		10.64	□□□□□ -0.71
SCN1A-222	ENST00000642141	ST8SIA6	P61647	398 aa		10.64	□□□□□ -0.71
SCN1A-222	ENST00000642141	SIM1	P81133	766 aa	Predicted RBP	10.64	□□□□□ -0.71
SCN1A-222	ENST00000642141	CENPC	Q03188	943 aa		10.64	□□□□□ -0.71
SCN1A-222	ENST00000642141	GRIK2	Q13002	908 aa		10.64	□□□□□ -0.71
SCN1A-222	ENST00000642141	NNT	Q13423	1086 aa		10.64	□□□□□ -0.71
SCN1A-222	ENST00000642141	E2F5	Q15329	346 aa		10.64	□□□□□ -0.71
SCN1A-222	ENST00000642141	PTPN20	Q4JDL3	420 aa		10.64	□□□□□ -0.71
SCN1A-222	ENST00000642141	PITRM1	Q5JRX3	1037 aa		10.64	□□□□□ -0.71
SCN1A-222	ENST00000642141	EFHC1	Q5JVL4	640 aa		10.64	□□□□□ -0.71
SCN1A-222	ENST00000642141	DPY19L2P1	Q6NXN4	242 aa		10.64	□□□□□ -0.71
SCN1A-222	ENST00000642141	OLFML1	Q6UWY5	402 aa		10.64	□□□□□ -0.71
SCN1A-222	ENST00000642141	LAYN	Q6UX15	382 aa		10.64	□□□□□ -0.71
SCN1A-222	ENST00000642141	C11orf57	Q6ZUT1	292 aa	Predicted RBP	10.64	□□□□□ -0.71
SCN1A-222	ENST00000642141	PHLDB2	Q86SQ0	1253 aa		10.64	□□□□□ -0.71
SCN1A-222	ENST00000642141	FAM71A	Q8IYT1	594 aa		10.64	□□□□□ -0.71
SCN1A-222	ENST00000642141	ATP6V0D2	Q8N8Y2	350 aa		10.64	□□□□□ -0.71
SCN1A-222	ENST00000642141	CADM4	Q8NFZ8	388 aa		10.64	□□□□□ -0.71
SCN1A-222	ENST00000642141	TTC17	Q96AE7	1141 aa		10.64	□□□□□ -0.71
SCN1A-222	ENST00000642141	BTN2A3P	Q96KV6	586 aa		10.64	□□□□□ -0.71
SCN1A-222	ENST00000642141	MRGPRX3	Q96LB0	322 aa		10.64	□□□□□ -0.71
SCN1A-222	ENST00000642141	FAM81B	Q96LP2	452 aa		10.64	□□□□□ -0.71
SCN1A-222	ENST00000642141	NOX5	Q96PH1	765 aa		10.64	□□□□□ -0.71
SCN1A-222	ENST00000642141	SLC2A13	Q96QE2	648 aa		10.64	□□□□□ -0.71
SCN1A-222	ENST00000642141	TRIM62	Q9BVG3	475 aa		10.64	□□□□□ -0.71
SCN1A-222	ENST00000642141	SIK2	Q9H0K1	926 aa		10.64	□□□□□ -0.71
SCN1A-222	ENST00000642141	VPS16	Q9H269	839 aa		10.64	□□□□□ -0.71
SCN1A-222	ENST00000642141	SLTM	Q9NWH9	1034 aa	Known RBP eCLIP	10.64	□□□□□ -0.71
SCN1A-222	ENST00000642141	SUN2	Q9UH99	717 aa		10.64	□□□□□ -0.71
SCN1A-222	ENST00000642141	SLC12A6	Q9UHW9	1150 aa		10.64	□□□□□ -0.71
SCN1A-222	ENST00000642141	ERVW-1	Q9UQF0	538 aa		10.64	□□□□□ -0.71
SCN1A-222	ENST00000642141	CHD8	Q9HCK8	2581 aa		10.63	□□□□□ -0.71
SCN1A-222	ENST00000642141	PLXND1	Q9Y4D7	1925 aa		10.63	□□□□□ -0.71
SCN1A-222	ENST00000642141		A0A1B0GTW7	788 aa		10.63	□□□□□ -0.71
SCN1A-222	ENST00000642141		A0A1B0GVT2	93 aa		10.63	□□□□□ -0.71
SCN1A-222	ENST00000642141	GOLGA8S	H3BPF8	625 aa		10.63	□□□□□ -0.71
SCN1A-222	ENST00000642141		M0QYT0	321 aa		10.63	□□□□□ -0.71
SCN1A-222	ENST00000642141	KCNK3	O14649	394 aa		10.63	□□□□□ -0.71
SCN1A-222	ENST00000642141	MID1	O15344	667 aa		10.63	□□□□□ -0.71
SCN1A-222	ENST00000642141	BCAT2	O15382	392 aa	Predicted RBP	10.63	□□□□□ -0.71
SCN1A-222	ENST00000642141	SH3BP5	O60239	455 aa		10.63	□□□□□ -0.71
SCN1A-222	ENST00000642141	HSF2BP	O75031	334 aa		10.63	□□□□□ -0.71
SCN1A-222	ENST00000642141	SEMA4F	O95754	770 aa		10.63	□□□□□ -0.71
SCN1A-222	ENST00000642141	CD59	P13987	128 aa		10.63	□□□□□ -0.71
SCN1A-222	ENST00000642141	CSRP1	P21291	193 aa	Known RBP	10.63	□□□□□ -0.71
SCN1A-222	ENST00000642141	ABCB4	P21439	1286 aa		10.63	□□□□□ -0.71
SCN1A-222	ENST00000642141	ERCC5	P28715	1186 aa	Predicted RBP	10.63	□□□□□ -0.71
SCN1A-222	ENST00000642141	CCR1	P32246	355 aa		10.63	□□□□□ -0.71
SCN1A-222	ENST00000642141	ECT2L	Q008S8	904 aa		10.63	□□□□□ -0.71
SCN1A-222	ENST00000642141	SLC6A3	Q01959	620 aa		10.63	□□□□□ -0.71
SCN1A-222	ENST00000642141	SEMA3B	Q13214	749 aa		10.63	□□□□□ -0.71
SCN1A-222	ENST00000642141	MEA1	Q16626	185 aa		10.63	□□□□□ -0.71
SCN1A-222	ENST00000642141	TCP11X2	Q5H9J9	407 aa		10.63	□□□□□ -0.71
SCN1A-222	ENST00000642141	C9orf64	Q5T6V5	341 aa		10.63	□□□□□ -0.71
SCN1A-222	ENST00000642141	KLHDC7A	Q5VTJ3	777 aa		10.63	□□□□□ -0.71
SCN1A-222	ENST00000642141	RNF219	Q5W0B1	726 aa	Predicted RBP	10.63	□□□□□ -0.71
SCN1A-222	ENST00000642141	ZNF776	Q68DI1	518 aa	Predicted RBP	10.63	□□□□□ -0.71
SCN1A-222	ENST00000642141	FBXL22	Q6P050	247 aa		10.63	□□□□□ -0.71
SCN1A-222	ENST00000642141	BEND5	Q7L4P6	421 aa		10.63	□□□□□ -0.71
SCN1A-222	ENST00000642141	RABEPK	Q7Z6M1	372 aa		10.63	□□□□□ -0.71
SCN1A-222	ENST00000642141	C14orf80	Q86SX3	495 aa		10.63	□□□□□ -0.71
SCN1A-222	ENST00000642141	PIP4P1	Q86T03	277 aa		10.63	□□□□□ -0.71
SCN1A-222	ENST00000642141	MMAA	Q8IVH4	418 aa	Known RBP	10.63	□□□□□ -0.71
SCN1A-222	ENST00000642141	CCAR2	Q8N163	923 aa	Known RBP	10.63	□□□□□ -0.71

Retrieved 100 of 20,778 RNA–protein pairs in 94.7 ms