RNA–Protein interactions for RNA: ENST00000637968.1

SCN1A-216, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,614 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-216ENST00000637968 B4E1Z4 1266 aa5.87□□□□□ -1.47
SCN1A-216ENST00000637968 RBAK-RBAKDNI3L0D1 243 aa5.87□□□□□ -1.47
SCN1A-216ENST00000637968 PLSCR1O15162 318 aa5.87□□□□□ -1.47
SCN1A-216ENST00000637968 TRIM24O15164 1050 aa5.87□□□□□ -1.47
SCN1A-216ENST00000637968 GMDSO60547 372 aa5.87□□□□□ -1.47
SCN1A-216ENST00000637968 APOC1P02654 83 aa5.87□□□□□ -1.47
SCN1A-216ENST00000637968 SERPINA6P08185 405 aa5.87□□□□□ -1.47
SCN1A-216ENST00000637968 ZNF806P0C7X5 589 aa5.87□□□□□ -1.47
SCN1A-216ENST00000637968 HOXB1P14653 301 aaPredicted RBP5.87□□□□□ -1.47
SCN1A-216ENST00000637968 KCNJ1P48048 391 aa5.87□□□□□ -1.47
SCN1A-216ENST00000637968 HK2P52789 917 aa5.87□□□□□ -1.47
SCN1A-216ENST00000637968 ATXN3P54252 364 aaPredicted RBP5.87□□□□□ -1.47
SCN1A-216ENST00000637968 NLRP11P59045 1033 aaKnown RBP5.87□□□□□ -1.47
SCN1A-216ENST00000637968 FKBP3Q00688 224 aaKnown RBP5.87□□□□□ -1.47
SCN1A-216ENST00000637968 PDIA2Q13087 525 aaKnown RBP5.87□□□□□ -1.47
SCN1A-216ENST00000637968 STX5Q13190 355 aa5.87□□□□□ -1.47
SCN1A-216ENST00000637968 COL9A3Q14050 684 aaPredicted RBP5.87□□□□□ -1.47
SCN1A-216ENST00000637968 GALEQ14376 348 aa5.87□□□□□ -1.47
SCN1A-216ENST00000637968 C4orf46Q504U0 113 aa5.87□□□□□ -1.47
SCN1A-216ENST00000637968 DCAF17Q5H9S7 520 aaPredicted RBP5.87□□□□□ -1.47
SCN1A-216ENST00000637968 BROXQ5VW32 411 aa5.87□□□□□ -1.47
SCN1A-216ENST00000637968 PYHIN1Q6K0P9 492 aa5.87□□□□□ -1.47
SCN1A-216ENST00000637968 ANKRD26P1Q6NSI1 321 aa5.87□□□□□ -1.47
SCN1A-216ENST00000637968 NLRX1Q86UT6 975 aa5.87□□□□□ -1.47
SCN1A-216ENST00000637968 OR8H1Q8NGG4 311 aa5.87□□□□□ -1.47
SCN1A-216ENST00000637968 SEC31BQ9NQW1 1179 aa5.87□□□□□ -1.47
SCN1A-216ENST00000637968 RAD54BQ9Y620 910 aa5.87□□□□□ -1.47
SCN1A-216ENST00000637968 PNMA8CA0A1B0GUJ8 204 aa5.86□□□□□ -1.47
SCN1A-216ENST00000637968 PI4K2BG5E9Z4 385 aa5.86□□□□□ -1.47
SCN1A-216ENST00000637968 TLR3O15455 904 aaKnown RBP5.86□□□□□ -1.47
SCN1A-216ENST00000637968 RHOBTB3O94955 611 aa5.86□□□□□ -1.47
SCN1A-216ENST00000637968 CALML3P27482 149 aa5.86□□□□□ -1.47
SCN1A-216ENST00000637968 POLR2BP30876 1174 aaKnown RBP5.86□□□□□ -1.47
SCN1A-216ENST00000637968 HOXA7P31268 230 aaPredicted RBP5.86□□□□□ -1.47
SCN1A-216ENST00000637968 GP5P40197 560 aa5.86□□□□□ -1.47
SCN1A-216ENST00000637968 NR2C2P49116 596 aa5.86□□□□□ -1.47
SCN1A-216ENST00000637968 TMBIM6P55061 237 aa5.86□□□□□ -1.47
SCN1A-216ENST00000637968 HLFQ16534 295 aa5.86□□□□□ -1.47
SCN1A-216ENST00000637968 RNASEH2BQ5TBB1 312 aaKnown RBP5.86□□□□□ -1.47
SCN1A-216ENST00000637968 PAOXQ6QHF9 649 aa5.86□□□□□ -1.47
SCN1A-216ENST00000637968 CRTC3Q6UUV7 619 aa5.86□□□□□ -1.47
SCN1A-216ENST00000637968 ZDHHC24Q6UX98 284 aa5.86□□□□□ -1.47
SCN1A-216ENST00000637968 NT5DC3Q86UY8 548 aa5.86□□□□□ -1.47
SCN1A-216ENST00000637968 KIF18BQ86Y91 864 aa5.86□□□□□ -1.47
SCN1A-216ENST00000637968 GALNT13Q8IUC8 556 aa5.86□□□□□ -1.47
SCN1A-216ENST00000637968 SYTL1Q8IYJ3 562 aa5.86□□□□□ -1.47
SCN1A-216ENST00000637968 TCP10LQ8TDR4 215 aa5.86□□□□□ -1.47
SCN1A-216ENST00000637968 EYA1Q99502 592 aa5.86□□□□□ -1.47
SCN1A-216ENST00000637968 MCMBPQ9BTE3 642 aa5.86□□□□□ -1.47
SCN1A-216ENST00000637968 APOL6Q9BWW8 343 aa5.86□□□□□ -1.47
SCN1A-216ENST00000637968 ZC3H12CQ9C0D7 883 aaKnown RBP5.86□□□□□ -1.47
SCN1A-216ENST00000637968 CHMP1AQ9HD42 196 aaPredicted RBP5.86□□□□□ -1.47
SCN1A-216ENST00000637968 PCDHB16Q9NRJ7 776 aa5.86□□□□□ -1.47
SCN1A-216ENST00000637968 MTRRQ9UBK8 725 aa5.86□□□□□ -1.47
SCN1A-216ENST00000637968 PRKAG2Q9UGJ0 569 aa5.86□□□□□ -1.47
SCN1A-216ENST00000637968 PCYOX1Q9UHG3 505 aa5.86□□□□□ -1.47
SCN1A-216ENST00000637968 CDH7Q9ULB5 785 aa5.86□□□□□ -1.47
SCN1A-216ENST00000637968 MAPRE3Q9UPY8 281 aa5.86□□□□□ -1.47
SCN1A-216ENST00000637968 TRAF6Q9Y4K3 522 aa5.86□□□□□ -1.47
SCN1A-216ENST00000637968 NDUFB9Q9Y6M9 179 aa5.86□□□□□ -1.47
SCN1A-216ENST00000637968 FPGT-TNNI3KV9GXZ4 949 aa5.86□□□□□ -1.47
SCN1A-216ENST00000637968 UBE4BO95155 1302 aa5.86□□□□□ -1.47
SCN1A-216ENST00000637968 A0A0G2JPF8 293 aa5.86□□□□□ -1.47
SCN1A-216ENST00000637968 OR6C65A6NJZ3 312 aa5.86□□□□□ -1.47
SCN1A-216ENST00000637968 PRR5-ARHGAP8B1AHC4 643 aa5.86□□□□□ -1.47
SCN1A-216ENST00000637968 HNRNPCL3B7ZW38 293 aa5.86□□□□□ -1.47
SCN1A-216ENST00000637968 ATE1O95260 518 aa5.86□□□□□ -1.47
SCN1A-216ENST00000637968 SLC4A1P02730 911 aa5.86□□□□□ -1.47
SCN1A-216ENST00000637968 HNRNPCL4P0DMR1 293 aa5.86□□□□□ -1.47
SCN1A-216ENST00000637968 ENO3P13929 434 aaPredicted RBP5.86□□□□□ -1.47
SCN1A-216ENST00000637968 NUDT2P50583 147 aa5.86□□□□□ -1.47
SCN1A-216ENST00000637968 SLC18A1P54219 525 aa5.86□□□□□ -1.47
SCN1A-216ENST00000637968 CSNK2BP67870 215 aa5.86□□□□□ -1.47
SCN1A-216ENST00000637968 ARHGAP8P85298 464 aa5.86□□□□□ -1.47
SCN1A-216ENST00000637968 LGALS3BPQ08380 585 aa5.86□□□□□ -1.47
SCN1A-216ENST00000637968 DBPQ10586 325 aaPredicted RBP5.86□□□□□ -1.47
SCN1A-216ENST00000637968 MTMR2Q13614 643 aa5.86□□□□□ -1.47
SCN1A-216ENST00000637968 POLD3Q15054 466 aaPredicted RBP5.86□□□□□ -1.47
SCN1A-216ENST00000637968 DALRD3Q5D0E6 543 aaKnown RBP5.86□□□□□ -1.47
SCN1A-216ENST00000637968 ARMC4Q5T2S8 1044 aa5.86□□□□□ -1.47
SCN1A-216ENST00000637968 SHEQ5VZ18 495 aa5.86□□□□□ -1.47
SCN1A-216ENST00000637968 KCTD8Q6ZWB6 473 aa5.86□□□□□ -1.47
SCN1A-216ENST00000637968 RAB43Q86YS6 212 aa5.86□□□□□ -1.47
SCN1A-216ENST00000637968 SFRP1Q8N474 314 aa5.86□□□□□ -1.47
SCN1A-216ENST00000637968 LHFPL5Q8TAF8 219 aa5.86□□□□□ -1.47
SCN1A-216ENST00000637968 EPS8L1Q8TE68 723 aa5.86□□□□□ -1.47
SCN1A-216ENST00000637968 DDX17Q92841 729 aaKnown RBP5.86□□□□□ -1.47
SCN1A-216ENST00000637968 FAM20AQ96MK3 541 aa5.86□□□□□ -1.47
SCN1A-216ENST00000637968 ADAM33Q9BZ11 813 aa5.86□□□□□ -1.47
SCN1A-216ENST00000637968 WNT8AQ9H1J5 351 aa5.86□□□□□ -1.47
SCN1A-216ENST00000637968 CLEC4MQ9H2X3 399 aaPredicted RBP5.86□□□□□ -1.47
SCN1A-216ENST00000637968 NARFLQ9H6Q4 476 aa5.86□□□□□ -1.47
SCN1A-216ENST00000637968 RGS17Q9UGC6 210 aaPredicted RBP5.86□□□□□ -1.47
SCN1A-216ENST00000637968 CNOT11Q9UKZ1 510 aaKnown RBP5.86□□□□□ -1.47
SCN1A-216ENST00000637968 BCL9O00512 1426 aa5.86□□□□□ -1.47
SCN1A-216ENST00000637968 MYH10P35580 1976 aa5.86□□□□□ -1.47
SCN1A-216ENST00000637968 TRAV6A0A075B6T7 132 aa5.86□□□□□ -1.47
SCN1A-216ENST00000637968 FOXO6A8MYZ6 492 aa5.86□□□□□ -1.47
SCN1A-216ENST00000637968 TCEA3O75764 348 aa5.86□□□□□ -1.47
SCN1A-216ENST00000637968 RSL1D1O76021 490 aaKnown RBP5.86□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms