RNA–Protein interactions for RNA: ENST00000636228.1

CLN3-246, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,224 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-246ENST00000636228 AZIN2Q96A70 460 aa16.75■□□□□ 0.27
CLN3-246ENST00000636228 TTC17Q96AE7 1141 aa16.75■□□□□ 0.27
CLN3-246ENST00000636228 TIGD1Q96MW7 591 aa16.75■□□□□ 0.27
CLN3-246ENST00000636228 ORAI3Q9BRQ5 295 aa16.75■□□□□ 0.27
CLN3-246ENST00000636228 RSPH9Q9H1X1 276 aaPredicted RBP16.75■□□□□ 0.27
CLN3-246ENST00000636228 ACP6Q9NPH0 428 aa16.75■□□□□ 0.27
CLN3-246ENST00000636228 TOR4AQ9NXH8 423 aa16.75■□□□□ 0.27
CLN3-246ENST00000636228 HOOK1Q9UJC3 728 aaKnown RBP16.75■□□□□ 0.27
CLN3-246ENST00000636228 LHX6Q9UPM6 363 aa16.75■□□□□ 0.27
CLN3-246ENST00000636228 CTNND2Q9UQB3 1225 aa16.75■□□□□ 0.27
CLN3-246ENST00000636228 TTC34A8MYJ7 566 aa16.74■□□□□ 0.27
CLN3-246ENST00000636228 H0Y8X5 98 aa16.74■□□□□ 0.27
CLN3-246ENST00000636228 MID1O15344 667 aa16.74■□□□□ 0.27
CLN3-246ENST00000636228 IGHV4-34P06331 123 aa16.74■□□□□ 0.27
CLN3-246ENST00000636228 C7P10643 843 aa16.74■□□□□ 0.27
CLN3-246ENST00000636228 KRT5P13647 590 aa16.74■□□□□ 0.27
CLN3-246ENST00000636228 CD27P26842 260 aa16.74■□□□□ 0.27
CLN3-246ENST00000636228 ST8SIA6P61647 398 aa16.74■□□□□ 0.27
CLN3-246ENST00000636228 CETN1Q12798 172 aa16.74■□□□□ 0.27
CLN3-246ENST00000636228 TEAD4Q15561 434 aa16.74■□□□□ 0.27
CLN3-246ENST00000636228 CCDC157Q569K6 752 aa16.74■□□□□ 0.27
CLN3-246ENST00000636228 MS4A13Q5J8X5 152 aa16.74■□□□□ 0.27
CLN3-246ENST00000636228 LRSAM1Q6UWE0 723 aa16.74■□□□□ 0.27
CLN3-246ENST00000636228 PROSER1Q86XN7 944 aa16.74■□□□□ 0.27
CLN3-246ENST00000636228 BAHD1Q8TBE0 780 aaPredicted RBP16.74■□□□□ 0.27
CLN3-246ENST00000636228 MDM1Q8TC05 714 aa16.74■□□□□ 0.27
CLN3-246ENST00000636228 SLC39A13Q96H72 371 aa16.74■□□□□ 0.27
CLN3-246ENST00000636228 SERPINB11Q96P15 392 aa16.74■□□□□ 0.27
CLN3-246ENST00000636228 GTPBP4Q9BZE4 634 aaKnown RBP16.74■□□□□ 0.27
CLN3-246ENST00000636228 INTS2Q9H0H0 1204 aaKnown RBP16.74■□□□□ 0.27
CLN3-246ENST00000636228 PABPC3Q9H361 631 aaKnown RBP16.74■□□□□ 0.27
CLN3-246ENST00000636228 FBRSQ9HAH7 460 aa16.74■□□□□ 0.27
CLN3-246ENST00000636228 EBF2Q9HAK2 575 aa16.74■□□□□ 0.27
CLN3-246ENST00000636228 SGK2Q9HBY8 427 aa16.74■□□□□ 0.27
CLN3-246ENST00000636228 FBXL12Q9NXK8 326 aa16.74■□□□□ 0.27
CLN3-246ENST00000636228 CYTH4Q9UIA0 394 aa16.74■□□□□ 0.27
CLN3-246ENST00000636228 SLCO3A1Q9UIG8 710 aa16.74■□□□□ 0.27
CLN3-246ENST00000636228 ERVW-1Q9UQF0 538 aa16.74■□□□□ 0.27
CLN3-246ENST00000636228 NCKAP1Q9Y2A7 1128 aa16.74■□□□□ 0.27
CLN3-246ENST00000636228 TLR6Q9Y2C9 796 aa16.74■□□□□ 0.27
CLN3-246ENST00000636228 PCDHGB2Q9Y5G2 931 aa16.74■□□□□ 0.27
CLN3-246ENST00000636228 A0A1W2PP55 124 aa16.73■□□□□ 0.27
CLN3-246ENST00000636228 P4HA2O15460 535 aa16.73■□□□□ 0.27
CLN3-246ENST00000636228 FLRT2O43155 660 aa16.73■□□□□ 0.27
CLN3-246ENST00000636228 GALCP54803 685 aa16.73■□□□□ 0.27
CLN3-246ENST00000636228 PITX1P78337 314 aaPredicted RBP16.73■□□□□ 0.27
CLN3-246ENST00000636228 GCNT1Q02742 428 aa16.73■□□□□ 0.27
CLN3-246ENST00000636228 CDH18Q13634 790 aa16.73■□□□□ 0.27
CLN3-246ENST00000636228 TAF5Q15542 800 aa16.73■□□□□ 0.27
CLN3-246ENST00000636228 HNRNPA1L2Q32P51 320 aaKnown RBP16.73■□□□□ 0.27
CLN3-246ENST00000636228 TTC31Q49AM3 519 aaPredicted RBP16.73■□□□□ 0.27
CLN3-246ENST00000636228 ZC3H12AQ5D1E8 599 aaKnown RBP16.73■□□□□ 0.27
CLN3-246ENST00000636228 PITRM1Q5JRX3 1037 aa16.73■□□□□ 0.27
CLN3-246ENST00000636228 C9orf64Q5T6V5 341 aa16.73■□□□□ 0.27
CLN3-246ENST00000636228 RAP1GAP2Q684P5 730 aa16.73■□□□□ 0.27
CLN3-246ENST00000636228 KIAA0895LQ68EN5 471 aa16.73■□□□□ 0.27
CLN3-246ENST00000636228 ADAT2Q7Z6V5 191 aaKnown RBP16.73■□□□□ 0.27
CLN3-246ENST00000636228 MMAAQ8IVH4 418 aaKnown RBP16.73■□□□□ 0.27
CLN3-246ENST00000636228 TRIM59Q8IWR1 403 aa16.73■□□□□ 0.27
CLN3-246ENST00000636228 APCDD1Q8J025 514 aa16.73■□□□□ 0.27
CLN3-246ENST00000636228 LGI2Q8N0V4 545 aa16.73■□□□□ 0.27
CLN3-246ENST00000636228 RPL10LQ96L21 214 aaKnown RBP16.73■□□□□ 0.27
CLN3-246ENST00000636228 DDX50Q9BQ39 737 aaKnown RBP16.73■□□□□ 0.27
CLN3-246ENST00000636228 NEUROG2Q9H2A3 272 aa16.73■□□□□ 0.27
CLN3-246ENST00000636228 UBE2TQ9NPD8 197 aaPredicted RBP16.73■□□□□ 0.27
CLN3-246ENST00000636228 TJP2Q9UDY2 1190 aa16.73■□□□□ 0.27
CLN3-246ENST00000636228 TYW5A2RUC4 315 aaKnown RBP16.72■□□□□ 0.27
CLN3-246ENST00000636228 CAPN9O14815 690 aa16.72■□□□□ 0.27
CLN3-246ENST00000636228 PAPSS1O43252 624 aaPredicted RBP16.72■□□□□ 0.27
CLN3-246ENST00000636228 RNASEH2AO75792 299 aaKnown RBP16.72■□□□□ 0.27
CLN3-246ENST00000636228 LETM1O95202 739 aaPredicted RBP16.72■□□□□ 0.27
CLN3-246ENST00000636228 GRIA4P48058 902 aa16.72■□□□□ 0.27
CLN3-246ENST00000636228 RPL34P49207 117 aaKnown RBP16.72■□□□□ 0.27
CLN3-246ENST00000636228 SUZ12Q15022 739 aaKnown RBP16.72■□□□□ 0.27
CLN3-246ENST00000636228 CST6Q15828 149 aa16.72■□□□□ 0.27
CLN3-246ENST00000636228 GJB7Q6PEY0 223 aa16.72■□□□□ 0.27
CLN3-246ENST00000636228 NCEH1Q6PIU2 408 aa16.72■□□□□ 0.27
CLN3-246ENST00000636228 CIR1Q86X95 450 aaPredicted RBP16.72■□□□□ 0.27
CLN3-246ENST00000636228 CCDC117Q8IWD4 279 aaPredicted RBP16.72■□□□□ 0.27
CLN3-246ENST00000636228 SLC6A18Q96N87 628 aa16.72■□□□□ 0.27
CLN3-246ENST00000636228 FAM129BQ96TA1 746 aa16.72■□□□□ 0.27
CLN3-246ENST00000636228 CDC6Q99741 560 aa16.72■□□□□ 0.27
CLN3-246ENST00000636228 SRRTQ9BXP5 876 aaKnown RBP16.72■□□□□ 0.27
CLN3-246ENST00000636228 IRX2Q9BZI1 471 aaPredicted RBP16.72■□□□□ 0.27
CLN3-246ENST00000636228 CCDC86Q9H6F5 360 aaKnown RBP16.72■□□□□ 0.27
CLN3-246ENST00000636228 OSGEPQ9NPF4 335 aa16.72■□□□□ 0.27
CLN3-246ENST00000636228 KIAA1522Q9P206 1035 aaPredicted RBP16.72■□□□□ 0.27
CLN3-246ENST00000636228 CEP83Q9Y592 693 aa16.72■□□□□ 0.27
CLN3-246ENST00000636228 CKAP5Q14008 2032 aa16.72■□□□□ 0.27
CLN3-246ENST00000636228 MUC22E2RYF6 1773 aaPredicted RBP16.72■□□□□ 0.27
CLN3-246ENST00000636228 SYNJ2BP-COX16A0A087WUM0 186 aa16.71■□□□□ 0.27
CLN3-246ENST00000636228 E5RJQ4 531 aa16.71■□□□□ 0.27
CLN3-246ENST00000636228 WNT9AO14904 365 aa16.71■□□□□ 0.27
CLN3-246ENST00000636228 RNASEH1O60930 286 aaKnown RBP16.71■□□□□ 0.27
CLN3-246ENST00000636228 GADD45BO75293 160 aaPredicted RBP16.71■□□□□ 0.27
CLN3-246ENST00000636228 LUC7L3O95232 432 aaKnown RBP16.71■□□□□ 0.27
CLN3-246ENST00000636228 AFPP02771 609 aaKnown RBP16.71■□□□□ 0.27
CLN3-246ENST00000636228 ASLP04424 464 aa16.71■□□□□ 0.27
CLN3-246ENST00000636228 TACR2P21452 398 aa16.71■□□□□ 0.27
CLN3-246ENST00000636228 SLC8A1P32418 973 aa16.71■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms