RNA–Protein interactions for RNA: ENST00000635750.1

SCN1A-209, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,299 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-209ENST00000635750 FNDC5Q8NAU1 212 aa5.66□□□□□ -1.5
SCN1A-209ENST00000635750 ACTRT2Q8TDY3 377 aa5.66□□□□□ -1.5
SCN1A-209ENST00000635750 METTL21AQ8WXB1 218 aa5.66□□□□□ -1.5
SCN1A-209ENST00000635750 HPS3Q969F9 1004 aa5.66□□□□□ -1.5
SCN1A-209ENST00000635750 FAM136AQ96C01 138 aa5.66□□□□□ -1.5
SCN1A-209ENST00000635750 SMARCD1Q96GM5 515 aa5.66□□□□□ -1.5
SCN1A-209ENST00000635750 CPB2Q96IY4 423 aa5.66□□□□□ -1.5
SCN1A-209ENST00000635750 SENP6Q9GZR1 1112 aaPredicted RBP5.66□□□□□ -1.5
SCN1A-209ENST00000635750 RRAGCQ9HB90 399 aa5.66□□□□□ -1.5
SCN1A-209ENST00000635750 MTMR4Q9NYA4 1195 aa5.66□□□□□ -1.5
SCN1A-209ENST00000635750 ERI2A8K979 691 aaKnown RBP5.66□□□□□ -1.5
SCN1A-209ENST00000635750 CDC40O60508 579 aaKnown RBP eCLIP5.66□□□□□ -1.5
SCN1A-209ENST00000635750 MSCO60682 206 aa5.66□□□□□ -1.5
SCN1A-209ENST00000635750 SEC22BO75396 215 aa5.66□□□□□ -1.5
SCN1A-209ENST00000635750 VTNP04004 478 aa5.66□□□□□ -1.5
SCN1A-209ENST00000635750 PNMA6AP0CW24 399 aaPredicted RBP5.66□□□□□ -1.5
SCN1A-209ENST00000635750 TEAD4Q15561 434 aa5.66□□□□□ -1.5
SCN1A-209ENST00000635750 PUS10Q3MIT2 529 aaKnown RBP5.66□□□□□ -1.5
SCN1A-209ENST00000635750 ARMC12Q5T9G4 340 aa5.66□□□□□ -1.5
SCN1A-209ENST00000635750 MPZL3Q6UWV2 235 aa5.66□□□□□ -1.5
SCN1A-209ENST00000635750 ILDR2Q71H61 639 aa5.66□□□□□ -1.5
SCN1A-209ENST00000635750 FIG4Q92562 907 aa5.66□□□□□ -1.5
SCN1A-209ENST00000635750 SLC24A3Q9HC58 644 aa5.66□□□□□ -1.5
SCN1A-209ENST00000635750 PRDM8Q9NQV8 689 aa5.66□□□□□ -1.5
SCN1A-209ENST00000635750 TPRKBQ9Y3C4 175 aa5.66□□□□□ -1.5
SCN1A-209ENST00000635750 IRAK3Q9Y616 596 aa5.66□□□□□ -1.5
SCN1A-209ENST00000635750 ALG6Q9Y672 507 aa5.66□□□□□ -1.5
SCN1A-209ENST00000635750 ATP6V1B1P15313 513 aa5.66□□□□□ -1.5
SCN1A-209ENST00000635750 ARF4P18085 180 aaPredicted RBP5.66□□□□□ -1.5
SCN1A-209ENST00000635750 CBWD6Q4V339 395 aa5.66□□□□□ -1.5
SCN1A-209ENST00000635750 SPANXN2Q5MJ10 180 aa5.66□□□□□ -1.5
SCN1A-209ENST00000635750 INTS11Q5TA45 600 aaKnown RBP5.66□□□□□ -1.5
SCN1A-209ENST00000635750 AGBL2Q5U5Z8 902 aa5.66□□□□□ -1.5
SCN1A-209ENST00000635750 MZT2BQ6NZ67 158 aa5.66□□□□□ -1.5
SCN1A-209ENST00000635750 PTAR1Q7Z6K3 402 aaPredicted RBP5.66□□□□□ -1.5
SCN1A-209ENST00000635750 LPCAT1Q8NF37 534 aa5.66□□□□□ -1.5
SCN1A-209ENST00000635750 RIT1Q92963 219 aa5.66□□□□□ -1.5
SCN1A-209ENST00000635750 OSBPL3Q9H4L5 887 aa5.66□□□□□ -1.5
SCN1A-209ENST00000635750 PIF1Q9H611 641 aa5.66□□□□□ -1.5
SCN1A-209ENST00000635750 ZDHHC6Q9H6R6 413 aa5.66□□□□□ -1.5
SCN1A-209ENST00000635750 CKLFQ9UBR5 152 aa5.66□□□□□ -1.5
SCN1A-209ENST00000635750 ADGRG1Q9Y653 693 aa5.66□□□□□ -1.5
SCN1A-209ENST00000635750 IDH3BO43837 385 aa5.66□□□□□ -1.5
SCN1A-209ENST00000635750 TSPAN3O60637 253 aa5.66□□□□□ -1.5
SCN1A-209ENST00000635750 TMCC2O75069 709 aa5.66□□□□□ -1.5
SCN1A-209ENST00000635750 NDUFB10O96000 172 aa5.66□□□□□ -1.5
SCN1A-209ENST00000635750 BMP7P18075 431 aa5.66□□□□□ -1.5
SCN1A-209ENST00000635750 CCND1P24385 295 aa5.66□□□□□ -1.5
SCN1A-209ENST00000635750 PRKAA2P54646 552 aa5.66□□□□□ -1.5
SCN1A-209ENST00000635750 TERF2Q15554 542 aa5.66□□□□□ -1.5
SCN1A-209ENST00000635750 TMC5Q6UXY8 1006 aa5.66□□□□□ -1.5
SCN1A-209ENST00000635750 BNC2Q6ZN30 1099 aaPredicted RBP5.66□□□□□ -1.5
SCN1A-209ENST00000635750 OAFQ86UD1 273 aa5.66□□□□□ -1.5
SCN1A-209ENST00000635750 HPS6Q86YV9 775 aa5.66□□□□□ -1.5
SCN1A-209ENST00000635750 GPR135Q8IZ08 494 aa5.66□□□□□ -1.5
SCN1A-209ENST00000635750 SPATA4Q8NEY3 305 aa5.66□□□□□ -1.5
SCN1A-209ENST00000635750 OR56A4Q8NGH8 313 aa5.66□□□□□ -1.5
SCN1A-209ENST00000635750 UBASH3BQ8TF42 649 aa5.66□□□□□ -1.5
SCN1A-209ENST00000635750 WDR60Q8WVS4 1066 aa5.66□□□□□ -1.5
SCN1A-209ENST00000635750 SLC9A6Q92581 669 aa5.66□□□□□ -1.5
SCN1A-209ENST00000635750 C18orf25Q96B23 403 aaPredicted RBP5.66□□□□□ -1.5
SCN1A-209ENST00000635750 Q96MT0 163 aa5.66□□□□□ -1.5
SCN1A-209ENST00000635750 FAM129BQ96TA1 746 aa5.66□□□□□ -1.5
SCN1A-209ENST00000635750 RHOBTB2Q9BYZ6 727 aa5.66□□□□□ -1.5
SCN1A-209ENST00000635750 SHCBP1LQ9BZQ2 653 aa5.66□□□□□ -1.5
SCN1A-209ENST00000635750 BATF3Q9NR55 127 aa5.66□□□□□ -1.5
SCN1A-209ENST00000635750 HCN3Q9P1Z3 774 aa5.66□□□□□ -1.5
SCN1A-209ENST00000635750 PCDHGA3Q9Y5H0 932 aa5.66□□□□□ -1.5
SCN1A-209ENST00000635750 PPP2R3BQ9Y5P8 575 aa5.66□□□□□ -1.5
SCN1A-209ENST00000635750 CDHR2Q9BYE9 1310 aa5.66□□□□□ -1.5
SCN1A-209ENST00000635750 ADGRL3Q9HAR2 1447 aa5.66□□□□□ -1.5
SCN1A-209ENST00000635750 CRABP2P29373 138 aa5.66□□□□□ -1.5
SCN1A-209ENST00000635750 CTNNB1P35222 781 aa5.66□□□□□ -1.5
SCN1A-209ENST00000635750 SLC7A2P52569 658 aa5.66□□□□□ -1.5
SCN1A-209ENST00000635750 HK2P52789 917 aa5.66□□□□□ -1.5
SCN1A-209ENST00000635750 GALCP54803 685 aa5.66□□□□□ -1.5
SCN1A-209ENST00000635750 VBP1P61758 197 aa5.66□□□□□ -1.5
SCN1A-209ENST00000635750 RPP38P78345 283 aaKnown RBP5.66□□□□□ -1.5
SCN1A-209ENST00000635750 LLGL2Q6P1M3 1020 aa5.66□□□□□ -1.5
SCN1A-209ENST00000635750 HHIPL2Q6UWX4 724 aa5.66□□□□□ -1.5
SCN1A-209ENST00000635750 ZNF621Q6ZSS3 439 aa5.66□□□□□ -1.5
SCN1A-209ENST00000635750 MILR1Q7Z6M3 343 aa5.66□□□□□ -1.5
SCN1A-209ENST00000635750 AMIGO1Q86WK6 493 aa5.66□□□□□ -1.5
SCN1A-209ENST00000635750 HEATR4Q86WZ0 1026 aa5.66□□□□□ -1.5
SCN1A-209ENST00000635750 AGBL3Q8NEM8 1001 aa5.66□□□□□ -1.5
SCN1A-209ENST00000635750 ZNF563Q8TA94 476 aa5.66□□□□□ -1.5
SCN1A-209ENST00000635750 APBB2Q92870 758 aa5.66□□□□□ -1.5
SCN1A-209ENST00000635750 PRMT6Q96LA8 375 aaPredicted RBP5.66□□□□□ -1.5
SCN1A-209ENST00000635750 RNF208Q9H0X6 261 aa5.66□□□□□ -1.5
SCN1A-209ENST00000635750 UBP1Q9NZI7 540 aa5.66□□□□□ -1.5
SCN1A-209ENST00000635750 TMEM216Q9P0N5 145 aa5.66□□□□□ -1.5
SCN1A-209ENST00000635750 ITGA11Q9UKX5 1188 aa5.66□□□□□ -1.5
SCN1A-209ENST00000635750 GIT1Q9Y2X7 761 aa5.66□□□□□ -1.5
SCN1A-209ENST00000635750 PCDHB11Q9Y5F2 797 aa5.66□□□□□ -1.5
SCN1A-209ENST00000635750 A0A0A6YYK5 440 aaPredicted RBP5.66□□□□□ -1.5
SCN1A-209ENST00000635750 LOC100653049A0A140TA62 436 aa5.66□□□□□ -1.5
SCN1A-209ENST00000635750 QSOX1O00391 747 aa5.66□□□□□ -1.5
SCN1A-209ENST00000635750 OGTO15294 1046 aa5.66□□□□□ -1.5
SCN1A-209ENST00000635750 SIN3BO75182 1162 aa5.66□□□□□ -1.5
SCN1A-209ENST00000635750 FASP25445 335 aa5.66□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms