RNA–Protein interactions for RNA: ENST00000595242.3

SCAF1-202, Transcript of SR-related CTD associated factor 1, humanhuman

APPRIS ALT2 TSL 3

Gene SCAF1, Length 463 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF1-202ENST00000595242 METTL12A8MUP2 240 aa13.41□□□□□ -0.26
SCAF1-202ENST00000595242 HOXC11O43248 304 aaPredicted RBP13.41□□□□□ -0.26
SCAF1-202ENST00000595242 LDHAP00338 332 aaKnown RBP13.41□□□□□ -0.26
SCAF1-202ENST00000595242 OAS1P00973 400 aaKnown RBP13.41□□□□□ -0.26
SCAF1-202ENST00000595242 HNF1BP35680 557 aa13.41□□□□□ -0.26
SCAF1-202ENST00000595242 GRIK1P39086 918 aa13.41□□□□□ -0.26
SCAF1-202ENST00000595242 GRK6P43250 576 aa13.41□□□□□ -0.26
SCAF1-202ENST00000595242 NAA30Q147X3 362 aaPredicted RBP13.41□□□□□ -0.26
SCAF1-202ENST00000595242 PSMD6Q15008 389 aa13.41□□□□□ -0.26
SCAF1-202ENST00000595242 KRT39Q6A163 491 aa13.41□□□□□ -0.26
SCAF1-202ENST00000595242 SMYD5Q6GMV2 418 aa13.41□□□□□ -0.26
SCAF1-202ENST00000595242 FAM171BQ6P995 826 aa13.41□□□□□ -0.26
SCAF1-202ENST00000595242 VPS36Q86VN1 386 aa13.41□□□□□ -0.26
SCAF1-202ENST00000595242 OSTM1Q86WC4 334 aa13.41□□□□□ -0.26
SCAF1-202ENST00000595242 RDH13Q8NBN7 331 aa13.41□□□□□ -0.26
SCAF1-202ENST00000595242 POMGNT1Q8WZA1 660 aa13.41□□□□□ -0.26
SCAF1-202ENST00000595242 OTUB2Q96DC9 234 aa13.41□□□□□ -0.26
SCAF1-202ENST00000595242 SAAL1Q96ER3 474 aa13.41□□□□□ -0.26
SCAF1-202ENST00000595242 ALS2CR12Q96Q35 445 aa13.41□□□□□ -0.26
SCAF1-202ENST00000595242 ARID3AQ99856 593 aa13.41□□□□□ -0.26
SCAF1-202ENST00000595242 EHD2Q9NZN4 543 aa13.41□□□□□ -0.26
SCAF1-202ENST00000595242 NAGPAQ9UK23 515 aa13.41□□□□□ -0.26
SCAF1-202ENST00000595242 JRKLQ9Y4A0 524 aa13.41□□□□□ -0.26
SCAF1-202ENST00000595242 CAPN6Q9Y6Q1 641 aa13.41□□□□□ -0.26
SCAF1-202ENST00000595242 DUSP10Q9Y6W6 482 aa13.41□□□□□ -0.26
SCAF1-202ENST00000595242 A0A0A6YYK5 440 aaPredicted RBP13.4□□□□□ -0.26
SCAF1-202ENST00000595242 GOLGA8IPA6NC78 632 aa13.4□□□□□ -0.26
SCAF1-202ENST00000595242 GOLGA8JA6NMD2 632 aa13.4□□□□□ -0.26
SCAF1-202ENST00000595242 B8ZZF3 427 aa13.4□□□□□ -0.26
SCAF1-202ENST00000595242 ATP2C2O75185 946 aa13.4□□□□□ -0.26
SCAF1-202ENST00000595242 ATP1A1P05023 1023 aaKnown RBP13.4□□□□□ -0.26
SCAF1-202ENST00000595242 H2AFXP16104 143 aaPredicted RBP13.4□□□□□ -0.26
SCAF1-202ENST00000595242 GCLMP48507 274 aa13.4□□□□□ -0.26
SCAF1-202ENST00000595242 CSNK1EP49674 416 aaKnown RBP13.4□□□□□ -0.26
SCAF1-202ENST00000595242 TLE3Q04726 772 aa13.4□□□□□ -0.26
SCAF1-202ENST00000595242 SRSF1Q07955 248 aaKnown RBP eCLIP13.4□□□□□ -0.26
SCAF1-202ENST00000595242 ERCC6LQ2NKX8 1250 aa13.4□□□□□ -0.26
SCAF1-202ENST00000595242 KIF19Q2TAC6 998 aa13.4□□□□□ -0.26
SCAF1-202ENST00000595242 VSTM1Q6UX27 236 aa13.4□□□□□ -0.26
SCAF1-202ENST00000595242 C4orf50Q6ZRC1 276 aa13.4□□□□□ -0.26
SCAF1-202ENST00000595242 METTL3Q86U44 580 aaKnown RBP13.4□□□□□ -0.26
SCAF1-202ENST00000595242 TMEM25Q86YD3 366 aa13.4□□□□□ -0.26
SCAF1-202ENST00000595242 C1orf216Q8TAB5 229 aa13.4□□□□□ -0.26
SCAF1-202ENST00000595242 SNIP1Q8TAD8 396 aaKnown RBP13.4□□□□□ -0.26
SCAF1-202ENST00000595242 UBXN4Q92575 508 aa13.4□□□□□ -0.26
SCAF1-202ENST00000595242 GOLGA1Q92805 767 aa13.4□□□□□ -0.26
SCAF1-202ENST00000595242 CEP295NLQ96MC4 621 aa13.4□□□□□ -0.26
SCAF1-202ENST00000595242 NOX5Q96PH1 765 aa13.4□□□□□ -0.26
SCAF1-202ENST00000595242 TTLL2Q9BWV7 592 aa13.4□□□□□ -0.26
SCAF1-202ENST00000595242 ITM2CQ9NQX7 267 aa13.4□□□□□ -0.26
SCAF1-202ENST00000595242 SPHK2Q9NRA0 654 aa13.4□□□□□ -0.26
SCAF1-202ENST00000595242 ADAMTS1Q9UHI8 967 aa13.4□□□□□ -0.26
SCAF1-202ENST00000595242 SNX11Q9Y5W9 270 aa13.4□□□□□ -0.26
SCAF1-202ENST00000595242 MACROD2A1Z1Q3 448 aa13.39□□□□□ -0.27
SCAF1-202ENST00000595242 ZNF233A6NK53 670 aa13.39□□□□□ -0.27
SCAF1-202ENST00000595242 WASH3PC4AMC7 463 aa13.39□□□□□ -0.27
SCAF1-202ENST00000595242 DDX3XO00571 662 aaKnown RBP eCLIP13.39□□□□□ -0.276e-7■■□□□ 12.6
SCAF1-202ENST00000595242 WISP1O95388 367 aa13.39□□□□□ -0.27
SCAF1-202ENST00000595242 BDNFP23560 247 aa13.39□□□□□ -0.27
SCAF1-202ENST00000595242 PCSK1P29120 753 aa13.39□□□□□ -0.27
SCAF1-202ENST00000595242 POLR2BP30876 1174 aaKnown RBP13.39□□□□□ -0.27
SCAF1-202ENST00000595242 LHX1P48742 406 aa13.39□□□□□ -0.27
SCAF1-202ENST00000595242 CLDN6P56747 220 aa13.39□□□□□ -0.27
SCAF1-202ENST00000595242 TAF10Q12962 218 aa13.39□□□□□ -0.27
SCAF1-202ENST00000595242 RTP5Q14D33 572 aa13.39□□□□□ -0.27
SCAF1-202ENST00000595242 GRAMD4Q6IC98 578 aa13.39□□□□□ -0.27
SCAF1-202ENST00000595242 ALKBH5Q6P6C2 394 aaKnown RBP13.39□□□□□ -0.27
SCAF1-202ENST00000595242 ZNF572Q7Z3I7 529 aaPredicted RBP13.39□□□□□ -0.27
SCAF1-202ENST00000595242 ARHGEF19Q8IW93 802 aa13.39□□□□□ -0.27
SCAF1-202ENST00000595242 BBS7Q8IWZ6 715 aa13.39□□□□□ -0.27
SCAF1-202ENST00000595242 FBXL13Q8NEE6 735 aa13.39□□□□□ -0.27
SCAF1-202ENST00000595242 FGF11Q92914 225 aa13.39□□□□□ -0.27
SCAF1-202ENST00000595242 FAM81BQ96LP2 452 aa13.39□□□□□ -0.27
SCAF1-202ENST00000595242 SEMA4CQ9C0C4 833 aa13.39□□□□□ -0.27
SCAF1-202ENST00000595242 NRSN2Q9GZP1 204 aa13.39□□□□□ -0.27
SCAF1-202ENST00000595242 DNAJC17Q9NVM6 304 aaKnown RBP13.39□□□□□ -0.27
SCAF1-202ENST00000595242 USP36Q9P275 1121 aaKnown RBP13.39□□□□□ -0.27
SCAF1-202ENST00000595242 FTSJ1Q9UET6 329 aa13.39□□□□□ -0.27
SCAF1-202ENST00000595242 SALL4Q9UJQ4 1053 aa13.39□□□□□ -0.27
SCAF1-202ENST00000595242 AGO2Q9UKV8 859 aaKnown RBP13.39□□□□□ -0.27
SCAF1-202ENST00000595242 AGAP1Q9UPQ3 857 aa13.39□□□□□ -0.27
SCAF1-202ENST00000595242 SH3BP1Q9Y3L3 701 aa13.39□□□□□ -0.27
SCAF1-202ENST00000595242 SAR1BQ9Y6B6 198 aa13.39□□□□□ -0.27
SCAF1-202ENST00000595242 ARID1BQ8NFD5 2236 aaPredicted RBP13.39□□□□□ -0.27
SCAF1-202ENST00000595242 USP9XQ93008 2570 aaPredicted RBP13.38□□□□□ -0.27
SCAF1-202ENST00000595242 PLXNA2O75051 1894 aa13.38□□□□□ -0.27
SCAF1-202ENST00000595242 PRRT4C9JH25 899 aa13.38□□□□□ -0.27
SCAF1-202ENST00000595242 TULP1O00294 542 aaPredicted RBP13.38□□□□□ -0.27
SCAF1-202ENST00000595242 KCNK3O14649 394 aa13.38□□□□□ -0.27
SCAF1-202ENST00000595242 GABRDO14764 452 aa13.38□□□□□ -0.27
SCAF1-202ENST00000595242 PCDHGA12O60330 932 aa13.38□□□□□ -0.27
SCAF1-202ENST00000595242 MOCS3O95396 460 aa13.38□□□□□ -0.27
SCAF1-202ENST00000595242 ITGB3P05106 788 aa13.38□□□□□ -0.27
SCAF1-202ENST00000595242 TPMTP51580 245 aa13.38□□□□□ -0.27
SCAF1-202ENST00000595242 AFF3P51826 1226 aaKnown RBP13.38□□□□□ -0.27
SCAF1-202ENST00000595242 NOP14P78316 857 aaKnown RBP13.38□□□□□ -0.27
SCAF1-202ENST00000595242 ARID5AQ03989 594 aa13.38□□□□□ -0.27
SCAF1-202ENST00000595242 CKAP4Q07065 602 aaKnown RBP13.38□□□□□ -0.27
SCAF1-202ENST00000595242 TARDBPQ13148 414 aaKnown RBP eCLIP13.38□□□□□ -0.27
SCAF1-202ENST00000595242 SCARA3Q6AZY7 606 aa13.38□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms