RNA–Protein interactions for RNA: ENST00000593582.5

TRIM28-203, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 533 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-203ENST00000593582 SCNN1AP37088 669 aa15.79■□□□□ 0.12
TRIM28-203ENST00000593582 COPAP53621 1224 aa15.79■□□□□ 0.12
TRIM28-203ENST00000593582 JAM2P57087 298 aa15.79■□□□□ 0.12
TRIM28-203ENST00000593582 ST8SIA6P61647 398 aa15.79■□□□□ 0.12
TRIM28-203ENST00000593582 CAMK2GQ13555 558 aaPredicted RBP15.79■□□□□ 0.12
TRIM28-203ENST00000593582 PTPRNQ16849 979 aa15.79■□□□□ 0.12
TRIM28-203ENST00000593582 RABGAP1LQ5R372 815 aa15.79■□□□□ 0.12
TRIM28-203ENST00000593582 FAM102AQ5T9C2 384 aaPredicted RBP15.79■□□□□ 0.12
TRIM28-203ENST00000593582 TTC39BQ5VTQ0 682 aaPredicted RBP15.79■□□□□ 0.12
TRIM28-203ENST00000593582 NEK11Q8NG66 645 aa15.79■□□□□ 0.12
TRIM28-203ENST00000593582 OR2T3Q8NH03 318 aa15.79■□□□□ 0.12
TRIM28-203ENST00000593582 LMLNQ96KR4 655 aa15.79■□□□□ 0.12
TRIM28-203ENST00000593582 EDEM2Q9BV94 578 aa15.79■□□□□ 0.12
TRIM28-203ENST00000593582 NLRC4Q9NPP4 1024 aa15.79■□□□□ 0.12
TRIM28-203ENST00000593582 ITM2CQ9NQX7 267 aa15.79■□□□□ 0.12
TRIM28-203ENST00000593582 TMEM51Q9NW97 253 aa15.79■□□□□ 0.12
TRIM28-203ENST00000593582 KIAA1522Q9P206 1035 aaPredicted RBP15.79■□□□□ 0.12
TRIM28-203ENST00000593582 SIK3Q9Y2K2 1263 aa15.79■□□□□ 0.12
TRIM28-203ENST00000593582 THADAQ6YHU6 1953 aa15.78■□□□□ 0.12
TRIM28-203ENST00000593582 LNP1A1A4G5 178 aa15.78■□□□□ 0.12
TRIM28-203ENST00000593582 PATE3B3GLJ2 98 aa15.78■□□□□ 0.12
TRIM28-203ENST00000593582 EPHB6O15197 1021 aa15.78■□□□□ 0.12
TRIM28-203ENST00000593582 ASLP04424 464 aa15.78■□□□□ 0.12
TRIM28-203ENST00000593582 CSKP41240 450 aa15.78■□□□□ 0.12
TRIM28-203ENST00000593582 STAT1P42224 750 aa15.78■□□□□ 0.12
TRIM28-203ENST00000593582 TPMTP51580 245 aa15.78■□□□□ 0.12
TRIM28-203ENST00000593582 CDR2Q01850 454 aa15.78■□□□□ 0.12
TRIM28-203ENST00000593582 ZNF33AQ06730 810 aa15.78■□□□□ 0.12
TRIM28-203ENST00000593582 NCAPHQ15003 741 aa15.78■□□□□ 0.12
TRIM28-203ENST00000593582 ANO6Q4KMQ2 910 aa15.78■□□□□ 0.12
TRIM28-203ENST00000593582 TRIM61Q5EBN2 209 aa15.78■□□□□ 0.12
TRIM28-203ENST00000593582 FSCBQ5H9T9 825 aa15.78■□□□□ 0.12
TRIM28-203ENST00000593582 NAA35Q5VZE5 725 aa15.78■□□□□ 0.12
TRIM28-203ENST00000593582 SND1Q7KZF4 910 aaKnown RBP eCLIP15.78■□□□□ 0.12
TRIM28-203ENST00000593582 XYLT1Q86Y38 959 aa15.78■□□□□ 0.12
TRIM28-203ENST00000593582 AOPEPQ8N6M6 819 aa15.78■□□□□ 0.12
TRIM28-203ENST00000593582 ZNF366Q8N895 744 aa15.78■□□□□ 0.12
TRIM28-203ENST00000593582 CPA5Q8WXQ8 436 aa15.78■□□□□ 0.12
TRIM28-203ENST00000593582 FOXJ1Q92949 421 aa15.78■□□□□ 0.12
TRIM28-203ENST00000593582 TTC17Q96AE7 1141 aa15.78■□□□□ 0.12
TRIM28-203ENST00000593582 TOE1Q96GM8 510 aaKnown RBP15.78■□□□□ 0.12
TRIM28-203ENST00000593582 HSPA12BQ96MM6 686 aa15.78■□□□□ 0.12
TRIM28-203ENST00000593582 PRMT1Q99873 361 aaKnown RBP15.78■□□□□ 0.12
TRIM28-203ENST00000593582 NUSAP1Q9BXS6 441 aaKnown RBP15.78■□□□□ 0.12
TRIM28-203ENST00000593582 FBRSQ9HAH7 460 aa15.78■□□□□ 0.12
TRIM28-203ENST00000593582 CD93Q9NPY3 652 aa15.78■□□□□ 0.12
TRIM28-203ENST00000593582 TMEM74BQ9NUR3 256 aa15.78■□□□□ 0.12
TRIM28-203ENST00000593582 USP36Q9P275 1121 aaKnown RBP15.78■□□□□ 0.12
TRIM28-203ENST00000593582 SUN2Q9UH99 717 aa15.78■□□□□ 0.12
TRIM28-203ENST00000593582 EVLQ9UI08 416 aaPredicted RBP15.78■□□□□ 0.12
TRIM28-203ENST00000593582 NOCTQ9UK39 431 aaKnown RBP15.78■□□□□ 0.12
TRIM28-203ENST00000593582 PILRBQ9UKJ0 227 aa15.78■□□□□ 0.12
TRIM28-203ENST00000593582 PAXBP1Q9Y5B6 917 aa15.78■□□□□ 0.12
TRIM28-203ENST00000593582 ATXN2Q99700 1313 aaKnown RBP15.77■□□□□ 0.12
TRIM28-203ENST00000593582 PLXND1Q9Y4D7 1925 aa15.77■□□□□ 0.12
TRIM28-203ENST00000593582 A0A1B0GVM2 712 aa15.77■□□□□ 0.12
TRIM28-203ENST00000593582 FAM170AA1A519 330 aa15.77■□□□□ 0.12
TRIM28-203ENST00000593582 TCAF2A6NFQ2 919 aa15.77■□□□□ 0.12
TRIM28-203ENST00000593582 SULT1E1P49888 294 aa15.77■□□□□ 0.12
TRIM28-203ENST00000593582 NOMO3P69849 1222 aa15.77■□□□□ 0.12
TRIM28-203ENST00000593582 IRX4P78413 519 aa15.77■□□□□ 0.12
TRIM28-203ENST00000593582 SLC12A1Q13621 1099 aa15.77■□□□□ 0.12
TRIM28-203ENST00000593582 AUHQ13825 339 aaKnown RBP15.77■□□□□ 0.12
TRIM28-203ENST00000593582 SLC25A52Q3SY17 297 aa15.77■□□□□ 0.12
TRIM28-203ENST00000593582 PITRM1Q5JRX3 1037 aa15.77■□□□□ 0.12
TRIM28-203ENST00000593582 SYCP2LQ5T4T6 812 aa15.77■□□□□ 0.12
TRIM28-203ENST00000593582 CAVIN1Q6NZI2 390 aaKnown RBP15.77■□□□□ 0.12
TRIM28-203ENST00000593582 MMS22LQ6ZRQ5 1243 aa15.77■□□□□ 0.12
TRIM28-203ENST00000593582 RABEPKQ7Z6M1 372 aa15.77■□□□□ 0.12
TRIM28-203ENST00000593582 CACUL1Q86Y37 369 aa15.77■□□□□ 0.12
TRIM28-203ENST00000593582 CEP76Q8TAP6 659 aa15.77■□□□□ 0.12
TRIM28-203ENST00000593582 SLC20A1Q8WUM9 679 aa15.77■□□□□ 0.12
TRIM28-203ENST00000593582 ZNF419Q96HQ0 510 aaPredicted RBP15.77■□□□□ 0.12
TRIM28-203ENST00000593582 RPRD1AQ96P16 312 aaPredicted RBP15.77■□□□□ 0.12
TRIM28-203ENST00000593582 ERGIC2Q96RQ1 377 aa15.77■□□□□ 0.12
TRIM28-203ENST00000593582 NPY6RQ99463 290 aa15.77■□□□□ 0.12
TRIM28-203ENST00000593582 NUP58Q9BVL2 599 aa15.77■□□□□ 0.12
TRIM28-203ENST00000593582 WDCPQ9H6R7 721 aa15.77■□□□□ 0.12
TRIM28-203ENST00000593582 PIGVQ9NUD9 493 aa15.77■□□□□ 0.12
TRIM28-203ENST00000593582 INTS6Q9UL03 887 aaKnown RBP15.77■□□□□ 0.12
TRIM28-203ENST00000593582 MED19A0JLT2 244 aaPredicted RBP15.76■□□□□ 0.11
TRIM28-203ENST00000593582 GOLGA8SH3BPF8 625 aa15.76■□□□□ 0.11
TRIM28-203ENST00000593582 PAGE1O75459 146 aa15.76■□□□□ 0.11
TRIM28-203ENST00000593582 F9P00740 461 aa15.76■□□□□ 0.11
TRIM28-203ENST00000593582 IGLV3-19P01714 112 aa15.76■□□□□ 0.11
TRIM28-203ENST00000593582 CFIP05156 583 aa15.76■□□□□ 0.11
TRIM28-203ENST00000593582 ATP1A3P13637 1013 aa15.76■□□□□ 0.11
TRIM28-203ENST00000593582 CXCR3P49682 368 aa15.76■□□□□ 0.11
TRIM28-203ENST00000593582 OXCT1P55809 520 aa15.76■□□□□ 0.11
TRIM28-203ENST00000593582 ECT2LQ008S8 904 aa15.76■□□□□ 0.11
TRIM28-203ENST00000593582 DEUP1Q05D60 604 aa15.76■□□□□ 0.11
TRIM28-203ENST00000593582 C2CD6Q53TS8 623 aa15.76■□□□□ 0.11
TRIM28-203ENST00000593582 BRMS1LQ5PSV4 323 aa15.76■□□□□ 0.11
TRIM28-203ENST00000593582 PEAR1Q5VY43 1037 aaPredicted RBP15.76■□□□□ 0.11
TRIM28-203ENST00000593582 RNF219Q5W0B1 726 aaPredicted RBP15.76■□□□□ 0.11
TRIM28-203ENST00000593582 FBXL22Q6P050 247 aa15.76■□□□□ 0.11
TRIM28-203ENST00000593582 SLC23A3Q6PIS1 610 aa15.76■□□□□ 0.11
TRIM28-203ENST00000593582 TRIM72Q6ZMU5 477 aa15.76■□□□□ 0.11
TRIM28-203ENST00000593582 APTXQ7Z2E3 356 aaKnown RBP15.76■□□□□ 0.11
TRIM28-203ENST00000593582 CIR1Q86X95 450 aaPredicted RBP15.76■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms