RNA–Protein interactions for RNA: ENST00000576019.5

VPS53-219, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 613 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-219ENST00000576019 CNTN6Q9UQ52 1028 aa6.23□□□□□ -1.41
VPS53-219ENST00000576019 NIP7Q9Y221 180 aaKnown RBP eCLIP6.23□□□□□ -1.41
VPS53-219ENST00000576019 USP15Q9Y4E8 981 aaPredicted RBP6.23□□□□□ -1.41
VPS53-219ENST00000576019 WDFY3Q8IZQ1 3526 aa6.23□□□□□ -1.41
VPS53-219ENST00000576019 SH3TC1Q8TE82 1336 aa6.23□□□□□ -1.41
VPS53-219ENST00000576019 TEX15Q9BXT5 2789 aa6.23□□□□□ -1.41
VPS53-219ENST00000576019 ITPR3Q14573 2671 aa6.22□□□□□ -1.41
VPS53-219ENST00000576019 GBF1Q92538 1859 aa6.22□□□□□ -1.41
VPS53-219ENST00000576019 PNMA6EA0A0J9YXQ4 647 aa6.22□□□□□ -1.41
VPS53-219ENST00000576019 FAM90A20PA6NIJ5 464 aa6.22□□□□□ -1.41
VPS53-219ENST00000576019 KIF28PB7ZC32 967 aa6.22□□□□□ -1.41
VPS53-219ENST00000576019 PEX12O00623 359 aa6.22□□□□□ -1.41
VPS53-219ENST00000576019 CCP110O43303 1012 aa6.22□□□□□ -1.41
VPS53-219ENST00000576019 MTSS1O43312 755 aa6.22□□□□□ -1.41
VPS53-219ENST00000576019 PIAS2O75928 621 aa6.22□□□□□ -1.41
VPS53-219ENST00000576019 KIF20AO95235 890 aa6.22□□□□□ -1.41
VPS53-219ENST00000576019 TGDSO95455 350 aa6.22□□□□□ -1.41
VPS53-219ENST00000576019 IGHA1P01876 353 aa6.22□□□□□ -1.41
VPS53-219ENST00000576019 CYP21A2P08686 494 aa6.22□□□□□ -1.41
VPS53-219ENST00000576019 CETPP11597 493 aa6.22□□□□□ -1.41
VPS53-219ENST00000576019 GYPEP15421 78 aa6.22□□□□□ -1.41
VPS53-219ENST00000576019 PNLIPP16233 465 aa6.22□□□□□ -1.41
VPS53-219ENST00000576019 EPHA8P29322 1005 aaPredicted RBP6.22□□□□□ -1.41
VPS53-219ENST00000576019 AVPR2P30518 371 aa6.22□□□□□ -1.41
VPS53-219ENST00000576019 TRHRP34981 398 aaPredicted RBP6.22□□□□□ -1.41
VPS53-219ENST00000576019 MTHFSP49914 203 aa6.22□□□□□ -1.41
VPS53-219ENST00000576019 ERVFC1P60507 584 aa6.22□□□□□ -1.41
VPS53-219ENST00000576019 PPARDQ03181 441 aa6.22□□□□□ -1.41
VPS53-219ENST00000576019 ZP2Q05996 745 aa6.22□□□□□ -1.41
VPS53-219ENST00000576019 STK4Q13043 487 aa6.22□□□□□ -1.41
VPS53-219ENST00000576019 RSPO4Q2I0M5 234 aaPredicted RBP6.22□□□□□ -1.41
VPS53-219ENST00000576019 DUSP28Q4G0W2 176 aa6.22□□□□□ -1.41
VPS53-219ENST00000576019 C1orf141Q5JVX7 400 aa6.22□□□□□ -1.41
VPS53-219ENST00000576019 GPR139Q6DWJ6 353 aa6.22□□□□□ -1.41
VPS53-219ENST00000576019 NAA16Q6N069 864 aaPredicted RBP6.22□□□□□ -1.41
VPS53-219ENST00000576019 RPTNQ6XPR3 784 aa6.22□□□□□ -1.41
VPS53-219ENST00000576019 IKBIPQ70UQ0 350 aa6.22□□□□□ -1.41
VPS53-219ENST00000576019 MED25Q71SY5 747 aa6.22□□□□□ -1.41
VPS53-219ENST00000576019 CXXC5Q7LFL8 322 aaKnown RBP6.22□□□□□ -1.41
VPS53-219ENST00000576019 CEP97Q8IW35 865 aa6.22□□□□□ -1.41
VPS53-219ENST00000576019 CARNMT1Q8N4J0 409 aa6.22□□□□□ -1.41
VPS53-219ENST00000576019 MSANTD4Q8NCY6 345 aa6.22□□□□□ -1.41
VPS53-219ENST00000576019 DNERQ8NFT8 737 aa6.22□□□□□ -1.41
VPS53-219ENST00000576019 LINS1Q8NG48 757 aa6.22□□□□□ -1.41
VPS53-219ENST00000576019 HMGB4Q8WW32 186 aa6.22□□□□□ -1.41
VPS53-219ENST00000576019 ALG3Q92685 438 aa6.22□□□□□ -1.41
VPS53-219ENST00000576019 CEP95Q96GE4 821 aa6.22□□□□□ -1.41
VPS53-219ENST00000576019 FEM1CQ96JP0 617 aa6.22□□□□□ -1.41
VPS53-219ENST00000576019 SYT3Q9BQG1 590 aa6.22□□□□□ -1.41
VPS53-219ENST00000576019 FUZQ9BT04 418 aa6.22□□□□□ -1.41
VPS53-219ENST00000576019 SPATA5L1Q9BVQ7 753 aa6.22□□□□□ -1.41
VPS53-219ENST00000576019 UPF3BQ9BZI7 483 aaKnown RBP6.22□□□□□ -1.41
VPS53-219ENST00000576019 UNKLQ9H9P5 680 aaKnown RBP6.22□□□□□ -1.41
VPS53-219ENST00000576019 ZDHHC7Q9NXF8 308 aa6.22□□□□□ -1.41
VPS53-219ENST00000576019 PLA2G3Q9NZ20 509 aa6.22□□□□□ -1.41
VPS53-219ENST00000576019 JKAMPQ9P055 326 aa6.22□□□□□ -1.41
VPS53-219ENST00000576019 MUTYHQ9UIF7 546 aa6.22□□□□□ -1.41
VPS53-219ENST00000576019 COL4A1P02462 1669 aa6.22□□□□□ -1.41
VPS53-219ENST00000576019 CEP295Q9C0D2 2601 aa6.22□□□□□ -1.41
VPS53-219ENST00000576019 ABCC4O15439 1325 aa6.22□□□□□ -1.41
VPS53-219ENST00000576019 RLFQ13129 1914 aa6.21□□□□□ -1.41
VPS53-219ENST00000576019 FRMPD3Q5JV73 1810 aa6.21□□□□□ -1.42
VPS53-219ENST00000576019 IQCJ-SCHIP1C9J366 451 aaPredicted RBP6.21□□□□□ -1.42
VPS53-219ENST00000576019 TNPO2O14787 897 aaKnown RBP6.21□□□□□ -1.42
VPS53-219ENST00000576019 CCNT2O60583 730 aaKnown RBP6.21□□□□□ -1.42
VPS53-219ENST00000576019 RASAL1O95294 804 aa6.21□□□□□ -1.42
VPS53-219ENST00000576019 ITGB2P05107 769 aa6.21□□□□□ -1.42
VPS53-219ENST00000576019 UBL4AP11441 157 aa6.21□□□□□ -1.42
VPS53-219ENST00000576019 SLC5A2P31639 672 aa6.21□□□□□ -1.42
VPS53-219ENST00000576019 PIK3CAP42336 1068 aa6.21□□□□□ -1.42
VPS53-219ENST00000576019 PRKCQQ04759 706 aa6.21□□□□□ -1.42
VPS53-219ENST00000576019 SLC39A6Q13433 755 aa6.21□□□□□ -1.42
VPS53-219ENST00000576019 ATP1A4Q13733 1029 aa6.21□□□□□ -1.42
VPS53-219ENST00000576019 DCTN1Q14203 1278 aa6.21□□□□□ -1.42
VPS53-219ENST00000576019 INSCQ1MX18 579 aa6.21□□□□□ -1.42
VPS53-219ENST00000576019 AMOTQ4VCS5 1084 aa6.21□□□□□ -1.42
VPS53-219ENST00000576019 DGAT2L7PQ6IED9 249 aa6.21□□□□□ -1.42
VPS53-219ENST00000576019 ZNF449Q6P9G9 518 aa6.21□□□□□ -1.42
VPS53-219ENST00000576019 RASGRP2Q7LDG7 609 aa6.21□□□□□ -1.42
VPS53-219ENST00000576019 CLEC14AQ86T13 490 aa6.21□□□□□ -1.42
VPS53-219ENST00000576019 PRPF39Q86UA1 669 aaKnown RBP6.21□□□□□ -1.42
VPS53-219ENST00000576019 ZC3H18Q86VM9 953 aaKnown RBP6.21□□□□□ -1.42
VPS53-219ENST00000576019 PDSS2Q86YH6 399 aa6.21□□□□□ -1.42
VPS53-219ENST00000576019 AVL9Q8NBF6 648 aa6.21□□□□□ -1.42
VPS53-219ENST00000576019 SLC22A17Q8WUG5 538 aa6.21□□□□□ -1.42
VPS53-219ENST00000576019 PHF7Q9BWX1 381 aaPredicted RBP6.21□□□□□ -1.42
VPS53-219ENST00000576019 TAS2R10Q9NYW0 307 aa6.21□□□□□ -1.42
VPS53-219ENST00000576019 YBX2Q9Y2T7 364 aaKnown RBP6.21□□□□□ -1.42
VPS53-219ENST00000576019 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP6.2□□□□□ -1.42
VPS53-219ENST00000576019 C17orf113A0A1B0GUU1 675 aa6.2□□□□□ -1.42
VPS53-219ENST00000576019 AQP7P3A6NL99 342 aa6.2□□□□□ -1.42
VPS53-219ENST00000576019 EFCAB8A8MWE9 144 aa6.2□□□□□ -1.42
VPS53-219ENST00000576019 UBE2CO00762 179 aa6.2□□□□□ -1.42
VPS53-219ENST00000576019 TAF5LO75529 589 aa6.2□□□□□ -1.42
VPS53-219ENST00000576019 LMNAP02545 664 aaKnown RBP6.2□□□□□ -1.42
VPS53-219ENST00000576019 PROS1P07225 676 aa6.2□□□□□ -1.42
VPS53-219ENST00000576019 NR2F1P10589 423 aa6.2□□□□□ -1.42
VPS53-219ENST00000576019 ATP5JP18859 108 aa6.2□□□□□ -1.42
VPS53-219ENST00000576019 ABCD1P33897 745 aa6.2□□□□□ -1.42
VPS53-219ENST00000576019 MCM2P49736 904 aa6.2□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 47.7 ms