RNA–Protein interactions for RNA: ENST00000568612.5

VPS35-208, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 697 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-208ENST00000568612 KLF1Q13351 362 aaPredicted RBP3.4□□□□□ -1.87
VPS35-208ENST00000568612 TUBB2AQ13885 445 aa3.4□□□□□ -1.87
VPS35-208ENST00000568612 PTGISQ16647 500 aa3.4□□□□□ -1.87
VPS35-208ENST00000568612 ABCB5Q2M3G0 1257 aa3.4□□□□□ -1.87
VPS35-208ENST00000568612 MST1LQ2TV78 715 aa3.4□□□□□ -1.87
VPS35-208ENST00000568612 CNPY1Q3B7I2 92 aa3.4□□□□□ -1.87
VPS35-208ENST00000568612 DENND2CQ68D51 928 aa3.4□□□□□ -1.87
VPS35-208ENST00000568612 KCTD16Q68DU8 428 aa3.4□□□□□ -1.87
VPS35-208ENST00000568612 SPECC1LQ69YQ0 1117 aa3.4□□□□□ -1.87
VPS35-208ENST00000568612 TATDN1Q6P1N9 297 aa3.4□□□□□ -1.87
VPS35-208ENST00000568612 ABRAXAS1Q6UWZ7 409 aa3.4□□□□□ -1.87
VPS35-208ENST00000568612 RTL10Q7L3V2 364 aa3.4□□□□□ -1.87
VPS35-208ENST00000568612 DOK3Q7L591 496 aa3.4□□□□□ -1.87
VPS35-208ENST00000568612 CATSPER4Q7RTX7 472 aa3.4□□□□□ -1.87
VPS35-208ENST00000568612 KCNK18Q7Z418 384 aa3.4□□□□□ -1.87
VPS35-208ENST00000568612 PATL1Q86TB9 770 aaKnown RBP3.4□□□□□ -1.87
VPS35-208ENST00000568612 SPATA24Q86W54 205 aa3.4□□□□□ -1.87
VPS35-208ENST00000568612 FAM9CQ8IZT9 166 aa3.4□□□□□ -1.87
VPS35-208ENST00000568612 LILRA3Q8N6C8 439 aaPredicted RBP3.4□□□□□ -1.87
VPS35-208ENST00000568612 PPFIBP2Q8ND30 876 aa3.4□□□□□ -1.87
VPS35-208ENST00000568612 OR7D4Q8NG98 312 aa3.4□□□□□ -1.87
VPS35-208ENST00000568612 OR10H5Q8NGA6 315 aa3.4□□□□□ -1.87
VPS35-208ENST00000568612 OR52N2Q8NGI0 321 aa3.4□□□□□ -1.87
VPS35-208ENST00000568612 CFAP61Q8NHU2 1237 aa3.4□□□□□ -1.87
VPS35-208ENST00000568612 GADD45GIP1Q8TAE8 222 aaPredicted RBP3.4□□□□□ -1.87
VPS35-208ENST00000568612 SPATA18Q8TC71 538 aa3.4□□□□□ -1.87
VPS35-208ENST00000568612 FNDC8Q8TC99 324 aa3.4□□□□□ -1.87
VPS35-208ENST00000568612 SLC22A8Q8TCC7 542 aa3.4□□□□□ -1.87
VPS35-208ENST00000568612 HCAR2Q8TDS4 363 aa3.4□□□□□ -1.87
VPS35-208ENST00000568612 ZNF473Q8WTR7 871 aaKnown RBP3.4□□□□□ -1.87
VPS35-208ENST00000568612 JDP2Q8WYK2 163 aa3.4□□□□□ -1.87
VPS35-208ENST00000568612 FAM149B1Q96BN6 582 aa3.4□□□□□ -1.87
VPS35-208ENST00000568612 EFHD2Q96C19 240 aaPredicted RBP3.4□□□□□ -1.87
VPS35-208ENST00000568612 CEP19Q96LK0 163 aa3.4□□□□□ -1.87
VPS35-208ENST00000568612 GDAP1L1Q96MZ0 367 aa3.4□□□□□ -1.87
VPS35-208ENST00000568612 OLFM3Q96PB7 478 aa3.4□□□□□ -1.87
VPS35-208ENST00000568612 ORAI2Q96SN7 254 aa3.4□□□□□ -1.87
VPS35-208ENST00000568612 DHRS9Q9BPW9 319 aa3.4□□□□□ -1.87
VPS35-208ENST00000568612 SLF1Q9BQI6 1058 aa3.4□□□□□ -1.87
VPS35-208ENST00000568612 SYT15Q9BQS2 421 aa3.4□□□□□ -1.87
VPS35-208ENST00000568612 PDCD2LQ9BRP1 358 aa3.4□□□□□ -1.87
VPS35-208ENST00000568612 NDC1Q9BTX1 674 aa3.4□□□□□ -1.87
VPS35-208ENST00000568612 TUBB2BQ9BVA1 445 aa3.4□□□□□ -1.87
VPS35-208ENST00000568612 MXD3Q9BW11 206 aa3.4□□□□□ -1.87
VPS35-208ENST00000568612 SPZ1Q9BXG8 430 aa3.4□□□□□ -1.87
VPS35-208ENST00000568612 MRPL9Q9BYD2 267 aaKnown RBP3.4□□□□□ -1.87
VPS35-208ENST00000568612 KRTAP4-5Q9BYR2 181 aa3.4□□□□□ -1.87
VPS35-208ENST00000568612 API5Q9BZZ5 524 aaKnown RBP3.4□□□□□ -1.87
VPS35-208ENST00000568612 TRIM5Q9C035 493 aa3.4□□□□□ -1.87
VPS35-208ENST00000568612 MTMR12Q9C0I1 747 aa3.4□□□□□ -1.87
VPS35-208ENST00000568612 PUS7LQ9H0K6 701 aaKnown RBP3.4□□□□□ -1.87
VPS35-208ENST00000568612 SNX25Q9H3E2 840 aa3.4□□□□□ -1.87
VPS35-208ENST00000568612 ZNF703Q9H7S9 590 aaPredicted RBP3.4□□□□□ -1.87
VPS35-208ENST00000568612 CYP4F11Q9HBI6 524 aa3.4□□□□□ -1.87
VPS35-208ENST00000568612 CNGB3Q9NQW8 809 aa3.4□□□□□ -1.87
VPS35-208ENST00000568612 SH3GLB2Q9NR46 395 aa3.4□□□□□ -1.87
VPS35-208ENST00000568612 ZNF277Q9NRM2 450 aaPredicted RBP3.4□□□□□ -1.87
VPS35-208ENST00000568612 EHD2Q9NZN4 543 aa3.4□□□□□ -1.87
VPS35-208ENST00000568612 EMC3Q9P0I2 261 aa3.4□□□□□ -1.87
VPS35-208ENST00000568612 FNIP2Q9P278 1114 aa3.4□□□□□ -1.87
VPS35-208ENST00000568612 HSFX1Q9UBD0 423 aa3.4□□□□□ -1.87
VPS35-208ENST00000568612 TRIM10Q9UDY6 481 aa3.4□□□□□ -1.87
VPS35-208ENST00000568612 TRPS1Q9UHF7 1281 aa3.4□□□□□ -1.87
VPS35-208ENST00000568612 BAIAP2L1Q9UHR4 511 aa3.4□□□□□ -1.87
VPS35-208ENST00000568612 SCOCQ9UIL1 159 aa3.4□□□□□ -1.87
VPS35-208ENST00000568612 GRID1Q9ULK0 1009 aa3.4□□□□□ -1.87
VPS35-208ENST00000568612 VANGL2Q9ULK5 521 aa3.4□□□□□ -1.87
VPS35-208ENST00000568612 HPCAL4Q9UM19 191 aa3.4□□□□□ -1.87
VPS35-208ENST00000568612 TMEM5Q9Y2B1 443 aa3.4□□□□□ -1.87
VPS35-208ENST00000568612 ATP11BQ9Y2G3 1177 aa3.4□□□□□ -1.87
VPS35-208ENST00000568612 DNAJC16Q9Y2G8 782 aa3.4□□□□□ -1.87
VPS35-208ENST00000568612 ATP6V1DQ9Y5K8 247 aa3.4□□□□□ -1.87
VPS35-208ENST00000568612 BIVM-ERCC5R4GMW8 1640 aa3.4□□□□□ -1.87
VPS35-208ENST00000568612 PLA2R1Q13018 1463 aa3.4□□□□□ -1.87
VPS35-208ENST00000568612 IQSEC2Q5JU85 1478 aa3.4□□□□□ -1.87
VPS35-208ENST00000568612 ZNF804BA4D1E1 1349 aa3.4□□□□□ -1.87
VPS35-208ENST00000568612 MROH7Q68CQ1 1323 aa3.4□□□□□ -1.87
VPS35-208ENST00000568612 SBNO1A3KN83 1393 aa3.39□□□□□ -1.87
VPS35-208ENST00000568612 INO80Q9ULG1 1556 aaPredicted RBP3.39□□□□□ -1.87
VPS35-208ENST00000568612 KDM6AO15550 1401 aaPredicted RBP3.39□□□□□ -1.87
VPS35-208ENST00000568612 NPHP4O75161 1426 aaPredicted RBP3.39□□□□□ -1.87
VPS35-208ENST00000568612 DAPK1P53355 1430 aa3.39□□□□□ -1.87
VPS35-208ENST00000568612 CYP2D7A0A087X1C5 515 aa3.39□□□□□ -1.87
VPS35-208ENST00000568612 ARHGAP10A1A4S6 786 aa3.39□□□□□ -1.87
VPS35-208ENST00000568612 FAM170AA1A519 330 aa3.39□□□□□ -1.87
VPS35-208ENST00000568612 GOLGA8IPA6NC78 632 aa3.39□□□□□ -1.87
VPS35-208ENST00000568612 C5orf60A6NFR6 353 aa3.39□□□□□ -1.87
VPS35-208ENST00000568612 SYCE1LA8MT33 242 aa3.39□□□□□ -1.87
VPS35-208ENST00000568612 hCG_1984214I3L0E3 225 aa3.39□□□□□ -1.87
VPS35-208ENST00000568612 GOLGA8RI6L899 631 aa3.39□□□□□ -1.87
VPS35-208ENST00000568612 LEFTY2O00292 366 aa3.39□□□□□ -1.87
VPS35-208ENST00000568612 FBP2O00757 339 aa3.39□□□□□ -1.87
VPS35-208ENST00000568612 HDAC3O15379 428 aa3.39□□□□□ -1.87
VPS35-208ENST00000568612 KATNA1O75449 491 aa3.39□□□□□ -1.87
VPS35-208ENST00000568612 PDE5AO76074 875 aa3.39□□□□□ -1.87
VPS35-208ENST00000568612 URI1O94763 535 aaPredicted RBP3.39□□□□□ -1.87
VPS35-208ENST00000568612 KLHL2O95198 593 aa3.39□□□□□ -1.87
VPS35-208ENST00000568612 ECDO95905 644 aaPredicted RBP3.39□□□□□ -1.87
VPS35-208ENST00000568612 ZBED1O96006 694 aa3.39□□□□□ -1.87
VPS35-208ENST00000568612 KRT6AP02538 564 aa3.39□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms