RNA–Protein interactions for RNA: ENST00000563874.5

CLN3-210, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 3,081 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-210ENST00000563874 SIKE1Q9BRV8 207 aa13.55□□□□□ -0.24
CLN3-210ENST00000563874 DPEP3Q9H4B8 488 aa13.55□□□□□ -0.24
CLN3-210ENST00000563874 DMAP1Q9NPF5 467 aaPredicted RBP13.55□□□□□ -0.24
CLN3-210ENST00000563874 CLIC5Q9NZA1 410 aa13.55□□□□□ -0.24
CLN3-210ENST00000563874 AKT3Q9Y243 479 aa13.55□□□□□ -0.24
CLN3-210ENST00000563874 INPP5FQ9Y2H2 1132 aa13.55□□□□□ -0.24
CLN3-210ENST00000563874 A0A0A0MRY4 1105 aa13.55□□□□□ -0.24
CLN3-210ENST00000563874 RNF103O00237 685 aa13.55□□□□□ -0.24
CLN3-210ENST00000563874 NEMP1O14524 444 aa13.55□□□□□ -0.24
CLN3-210ENST00000563874 GAS2O43903 313 aaKnown RBP13.55□□□□□ -0.24
CLN3-210ENST00000563874 MFSD11O43934 449 aa13.55□□□□□ -0.24
CLN3-210ENST00000563874 HSPA4LO95757 839 aa13.55□□□□□ -0.24
CLN3-210ENST00000563874 ADORA2BP29275 332 aa13.55□□□□□ -0.24
CLN3-210ENST00000563874 LAMB3Q13751 1172 aa13.55□□□□□ -0.24
CLN3-210ENST00000563874 GJC2Q5T442 439 aaPredicted RBP13.55□□□□□ -0.24
CLN3-210ENST00000563874 STEAP4Q687X5 459 aa13.55□□□□□ -0.24
CLN3-210ENST00000563874 FBXW8Q8N3Y1 598 aa13.55□□□□□ -0.24
CLN3-210ENST00000563874 DDX55Q8NHQ9 600 aaKnown RBP eCLIP13.55□□□□□ -0.24
CLN3-210ENST00000563874 ADAM32Q8TC27 787 aa13.55□□□□□ -0.24
CLN3-210ENST00000563874 ACMSDQ8TDX5 336 aa13.55□□□□□ -0.24
CLN3-210ENST00000563874 NMD3Q96D46 503 aaKnown RBP13.55□□□□□ -0.24
CLN3-210ENST00000563874 KLRG1Q96E93 195 aa13.55□□□□□ -0.24
CLN3-210ENST00000563874 SPATA13Q96N96 652 aa13.55□□□□□ -0.24
CLN3-210ENST00000563874 LENG8Q96PV6 779 aaPredicted RBP13.55□□□□□ -0.24
CLN3-210ENST00000563874 OR52B2Q96RD2 323 aa13.55□□□□□ -0.24
CLN3-210ENST00000563874 EPAS1Q99814 870 aa13.55□□□□□ -0.24
CLN3-210ENST00000563874 SLC4A5Q9BY07 1137 aa13.55□□□□□ -0.24
CLN3-210ENST00000563874 GCOM2Q9BZD3 368 aaPredicted RBP13.55□□□□□ -0.24
CLN3-210ENST00000563874 SNX15Q9NRS6 342 aa13.55□□□□□ -0.24
CLN3-210ENST00000563874 DNAJC28Q9NX36 388 aa13.55□□□□□ -0.24
CLN3-210ENST00000563874 PCDHGB4Q9UN71 923 aa13.55□□□□□ -0.24
CLN3-210ENST00000563874 PCDHGB5Q9Y5G0 923 aa13.55□□□□□ -0.24
CLN3-210ENST00000563874 H3BNX3 289 aa13.54□□□□□ -0.24
CLN3-210ENST00000563874 TGFB3P10600 412 aa13.54□□□□□ -0.24
CLN3-210ENST00000563874 GRK2P25098 689 aa13.54□□□□□ -0.24
CLN3-210ENST00000563874 RBP5P82980 135 aa13.54□□□□□ -0.24
CLN3-210ENST00000563874 IRF9Q00978 393 aa13.54□□□□□ -0.24
CLN3-210ENST00000563874 EN1Q05925 392 aaPredicted RBP13.54□□□□□ -0.24
CLN3-210ENST00000563874 PPM1LQ5SGD2 360 aa13.54□□□□□ -0.24
CLN3-210ENST00000563874 CELF3Q5SZQ8 465 aaKnown RBP13.54□□□□□ -0.24
CLN3-210ENST00000563874 LBX2Q6XYB7 198 aa13.54□□□□□ -0.24
CLN3-210ENST00000563874 TMEM110Q86TL2 294 aa13.54□□□□□ -0.24
CLN3-210ENST00000563874 RNF148Q8N7C7 305 aa13.54□□□□□ -0.24
CLN3-210ENST00000563874 SLC35F5Q8WV83 523 aa13.54□□□□□ -0.24
CLN3-210ENST00000563874 AGAP2Q99490 1192 aa13.54□□□□□ -0.24
CLN3-210ENST00000563874 NDNQ99608 321 aa13.54□□□□□ -0.24
CLN3-210ENST00000563874 UBE2OQ9C0C9 1292 aaKnown RBP13.54□□□□□ -0.24
CLN3-210ENST00000563874 WDR55Q9H6Y2 383 aaPredicted RBP13.54□□□□□ -0.24
CLN3-210ENST00000563874 VRTNQ9H8Y1 702 aa13.54□□□□□ -0.24
CLN3-210ENST00000563874 PRMT7Q9NVM4 692 aaPredicted RBP13.54□□□□□ -0.24
CLN3-210ENST00000563874 ZDHHC7Q9NXF8 308 aa13.54□□□□□ -0.24
CLN3-210ENST00000563874 GGA3Q9NZ52 723 aa13.54□□□□□ -0.24
CLN3-210ENST00000563874 DGKIO75912 1065 aa13.54□□□□□ -0.24
CLN3-210ENST00000563874 PDGFRBP09619 1106 aa13.54□□□□□ -0.24
CLN3-210ENST00000563874 CCDC130P13994 396 aa13.54□□□□□ -0.24
CLN3-210ENST00000563874 DESP17661 470 aa13.54□□□□□ -0.24
CLN3-210ENST00000563874 CCR10P46092 362 aa13.54□□□□□ -0.24
CLN3-210ENST00000563874 FOLH1Q04609 750 aa13.54□□□□□ -0.24
CLN3-210ENST00000563874 SESTD1Q86VW0 696 aa13.54□□□□□ -0.24
CLN3-210ENST00000563874 ARHGAP18Q8N392 663 aa13.54□□□□□ -0.24
CLN3-210ENST00000563874 DCLK2Q8N568 766 aa13.54□□□□□ -0.24
CLN3-210ENST00000563874 OR6B3Q8NGW1 331 aa13.54□□□□□ -0.24
CLN3-210ENST00000563874 P2RY11Q96G91 374 aa13.54□□□□□ -0.24
CLN3-210ENST00000563874 FAM210AQ96ND0 272 aa13.54□□□□□ -0.24
CLN3-210ENST00000563874 FCRL3Q96P31 734 aaPredicted RBP13.54□□□□□ -0.24
CLN3-210ENST00000563874 STN1Q9H668 368 aaKnown RBP13.54□□□□□ -0.24
CLN3-210ENST00000563874 ASB7Q9H672 318 aa13.54□□□□□ -0.24
CLN3-210ENST00000563874 KCNK1O00180 336 aa13.53□□□□□ -0.24
CLN3-210ENST00000563874 AMHP03971 560 aa13.53□□□□□ -0.24
CLN3-210ENST00000563874 MCF2P10911 925 aa13.53□□□□□ -0.24
CLN3-210ENST00000563874 PGAM1P18669 254 aa13.53□□□□□ -0.24
CLN3-210ENST00000563874 NUDT2P50583 147 aa13.53□□□□□ -0.24
CLN3-210ENST00000563874 BTKQ06187 659 aa13.53□□□□□ -0.24
CLN3-210ENST00000563874 KLF10Q13118 480 aa13.53□□□□□ -0.24
CLN3-210ENST00000563874 PKDCCQ504Y2 493 aa13.53□□□□□ -0.24
CLN3-210ENST00000563874 C4orf22Q6V702 233 aa13.53□□□□□ -0.24
CLN3-210ENST00000563874 NME8Q8N427 588 aa13.53□□□□□ -0.24
CLN3-210ENST00000563874 ICA1LQ8NDH6 482 aa13.53□□□□□ -0.24
CLN3-210ENST00000563874 VCX3BQ9H321 246 aa13.53□□□□□ -0.24
CLN3-210ENST00000563874 PDGFCQ9NRA1 345 aa13.53□□□□□ -0.24
CLN3-210ENST00000563874 ARHGAP26Q9UNA1 814 aa13.53□□□□□ -0.24
CLN3-210ENST00000563874 DOCK1Q14185 1865 aa13.53□□□□□ -0.24
CLN3-210ENST00000563874 NR2C2P49116 596 aa13.53□□□□□ -0.24
CLN3-210ENST00000563874 GLRA4Q5JXX5 417 aa13.53□□□□□ -0.24
CLN3-210ENST00000563874 STXBP5Q5T5C0 1151 aa13.53□□□□□ -0.24
CLN3-210ENST00000563874 LRRC8BQ6P9F7 803 aa13.53□□□□□ -0.24
CLN3-210ENST00000563874 JADE3Q92613 823 aa13.53□□□□□ -0.24
CLN3-210ENST00000563874 SPATC1LQ9H0A9 340 aa13.53□□□□□ -0.24
CLN3-210ENST00000563874 MORF4L1Q9UBU8 362 aa13.53□□□□□ -0.24
CLN3-210ENST00000563874 GINS2Q9Y248 185 aa13.53□□□□□ -0.24
CLN3-210ENST00000563874 SSX2IPQ9Y2D8 614 aa13.53□□□□□ -0.24
CLN3-210ENST00000563874 HES2Q9Y543 173 aa13.53□□□□□ -0.24
CLN3-210ENST00000563874 C15orf38-AP3S2A0A0A6YYH1 394 aa13.53□□□□□ -0.24
CLN3-210ENST00000563874 CCDC78A2IDD5 438 aa13.53□□□□□ -0.24
CLN3-210ENST00000563874 GOLGA8TH3BQL2 631 aa13.53□□□□□ -0.24
CLN3-210ENST00000563874 CREB3O43889 395 aa13.53□□□□□ -0.24
CLN3-210ENST00000563874 LTFP02788 710 aa13.53□□□□□ -0.24
CLN3-210ENST00000563874 CHRNGP07510 517 aa13.53□□□□□ -0.24
CLN3-210ENST00000563874 INSRRP14616 1297 aa13.53□□□□□ -0.24
CLN3-210ENST00000563874 MX2P20592 715 aa13.53□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms