RNA–Protein interactions for RNA: ENST00000561026.5

SNX1-213, Transcript of sorting nexin 1, humanhuman

TSL 1 (best) BASIC

Gene SNX1, Length 1,374 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-213ENST00000561026 SEMA4FO95754 770 aa16.79■□□□□ 0.28
SNX1-213ENST00000561026 TRUB2O95900 331 aaKnown RBP16.79■□□□□ 0.28
SNX1-213ENST00000561026 IGLV3-25P01717 112 aa16.79■□□□□ 0.28
SNX1-213ENST00000561026 APOEP02649 317 aa16.79■□□□□ 0.28
SNX1-213ENST00000561026 ASLP04424 464 aa16.79■□□□□ 0.28
SNX1-213ENST00000561026 RDXP35241 583 aaKnown RBP16.79■□□□□ 0.28
SNX1-213ENST00000561026 USP8P40818 1118 aa16.79■□□□□ 0.28
SNX1-213ENST00000561026 ST8SIA6P61647 398 aa16.79■□□□□ 0.28
SNX1-213ENST00000561026 BNC1Q01954 994 aa16.79■□□□□ 0.28
SNX1-213ENST00000561026 APBA1Q02410 837 aa16.79■□□□□ 0.28
SNX1-213ENST00000561026 PDCLQ13371 301 aa16.79■□□□□ 0.28
SNX1-213ENST00000561026 EIF4EBP2Q13542 120 aaPredicted RBP16.79■□□□□ 0.28
SNX1-213ENST00000561026 ARID5BQ14865 1188 aa16.79■□□□□ 0.28
SNX1-213ENST00000561026 ZNF776Q68DI1 518 aaPredicted RBP16.79■□□□□ 0.28
SNX1-213ENST00000561026 GBP6Q6ZN66 633 aa16.79■□□□□ 0.28
SNX1-213ENST00000561026 MMS22LQ6ZRQ5 1243 aa16.79■□□□□ 0.28
SNX1-213ENST00000561026 WDTC1Q8N5D0 677 aa16.79■□□□□ 0.28
SNX1-213ENST00000561026 KDM1BQ8NB78 822 aa16.79■□□□□ 0.28
SNX1-213ENST00000561026 BTN2A3PQ96KV6 586 aa16.79■□□□□ 0.28
SNX1-213ENST00000561026 MRGPRX3Q96LB0 322 aa16.79■□□□□ 0.28
SNX1-213ENST00000561026 RSPH9Q9H1X1 276 aaPredicted RBP16.79■□□□□ 0.28
SNX1-213ENST00000561026 MTG2Q9H4K7 406 aa16.79■□□□□ 0.28
SNX1-213ENST00000561026 APEX2Q9UBZ4 518 aa16.79■□□□□ 0.28
SNX1-213ENST00000561026 ZBTB32Q9Y2Y4 487 aaPredicted RBP16.79■□□□□ 0.28
SNX1-213ENST00000561026 NEUROG3Q9Y4Z2 214 aa16.79■□□□□ 0.28
SNX1-213ENST00000561026 NUMA1Q14980 2115 aa16.79■□□□□ 0.28
SNX1-213ENST00000561026 AKAP13Q12802 2813 aa16.79■□□□□ 0.28
SNX1-213ENST00000561026 CHD6Q8TD26 2715 aa16.79■□□□□ 0.28
SNX1-213ENST00000561026 GTPBP10A4D1E9 387 aaKnown RBP16.78■□□□□ 0.28
SNX1-213ENST00000561026 H0Y626 953 aa16.78■□□□□ 0.28
SNX1-213ENST00000561026 TRIM16O95361 564 aa16.78■□□□□ 0.28
SNX1-213ENST00000561026 PON1P27169 355 aa16.78■□□□□ 0.28
SNX1-213ENST00000561026 AFF3P51826 1226 aaKnown RBP16.78■□□□□ 0.28
SNX1-213ENST00000561026 TAF5Q15542 800 aa16.78■□□□□ 0.28
SNX1-213ENST00000561026 TRIP6Q15654 476 aaKnown RBP16.78■□□□□ 0.28
SNX1-213ENST00000561026 ARHGAP44Q17R89 818 aa16.78■□□□□ 0.28
SNX1-213ENST00000561026 EXOC3L4Q17RC7 722 aa16.78■□□□□ 0.28
SNX1-213ENST00000561026 HNRNPA1L2Q32P51 320 aaKnown RBP16.78■□□□□ 0.28
SNX1-213ENST00000561026 TTC31Q49AM3 519 aaPredicted RBP16.78■□□□□ 0.28
SNX1-213ENST00000561026 PITRM1Q5JRX3 1037 aa16.78■□□□□ 0.28
SNX1-213ENST00000561026 IL27RAQ6UWB1 636 aa16.78■□□□□ 0.28
SNX1-213ENST00000561026 NAXDQ8IW45 347 aa16.78■□□□□ 0.28
SNX1-213ENST00000561026 LGI2Q8N0V4 545 aa16.78■□□□□ 0.28
SNX1-213ENST00000561026 KDF1Q8NAX2 398 aaPredicted RBP16.78■□□□□ 0.28
SNX1-213ENST00000561026 MLKLQ8NB16 471 aa16.78■□□□□ 0.28
SNX1-213ENST00000561026 SHC3Q92529 594 aa16.78■□□□□ 0.28
SNX1-213ENST00000561026 SNX19Q92543 992 aa16.78■□□□□ 0.28
SNX1-213ENST00000561026 GATA6Q92908 595 aa16.78■□□□□ 0.28
SNX1-213ENST00000561026 GAREM1Q9H706 876 aa16.78■□□□□ 0.28
SNX1-213ENST00000561026 IL21RQ9HBE5 538 aa16.78■□□□□ 0.28
SNX1-213ENST00000561026 KIAA1522Q9P206 1035 aaPredicted RBP16.78■□□□□ 0.28
SNX1-213ENST00000561026 TJP2Q9UDY2 1190 aa16.78■□□□□ 0.28
SNX1-213ENST00000561026 SLCO1B1Q9Y6L6 691 aa16.78■□□□□ 0.28
SNX1-213ENST00000561026 ZZEF1O43149 2961 aa16.78■□□□□ 0.28
SNX1-213ENST00000561026 CER1O95813 267 aa16.77■□□□□ 0.28
SNX1-213ENST00000561026 ZNF883P0CG24 379 aa16.77■□□□□ 0.28
SNX1-213ENST00000561026 TACR2P21452 398 aa16.77■□□□□ 0.28
SNX1-213ENST00000561026 MATKP42679 507 aa16.77■□□□□ 0.28
SNX1-213ENST00000561026 CSNK1EP49674 416 aaKnown RBP16.77■□□□□ 0.28
SNX1-213ENST00000561026 PITX1P78337 314 aaPredicted RBP16.77■□□□□ 0.28
SNX1-213ENST00000561026 ZNF423Q2M1K9 1284 aa16.77■□□□□ 0.28
SNX1-213ENST00000561026 HLA-BQ31612 363 aa16.77■□□□□ 0.28
SNX1-213ENST00000561026 RAP1GAP2Q684P5 730 aa16.77■□□□□ 0.28
SNX1-213ENST00000561026 SMYD5Q6GMV2 418 aa16.77■□□□□ 0.28
SNX1-213ENST00000561026 BIRC7Q96CA5 298 aa16.77■□□□□ 0.28
SNX1-213ENST00000561026 CPXM1Q96SM3 734 aa16.77■□□□□ 0.28
SNX1-213ENST00000561026 SGK2Q9HBY8 427 aa16.77■□□□□ 0.28
SNX1-213ENST00000561026 OSGEPQ9NPF4 335 aa16.77■□□□□ 0.28
SNX1-213ENST00000561026 SLTMQ9NWH9 1034 aaKnown RBP eCLIP16.77■□□□□ 0.28
SNX1-213ENST00000561026 SLC12A6Q9UHW9 1150 aa16.77■□□□□ 0.28
SNX1-213ENST00000561026 SCML1Q9UN30 329 aa16.77■□□□□ 0.28
SNX1-213ENST00000561026 PCDHGC3Q9UN70 934 aa16.77■□□□□ 0.28
SNX1-213ENST00000561026 ERVW-1Q9UQF0 538 aa16.77■□□□□ 0.28
SNX1-213ENST00000561026 MSRB2Q9Y3D2 182 aa16.77■□□□□ 0.28
SNX1-213ENST00000561026 PCDHB9Q9Y5E1 797 aa16.77■□□□□ 0.28
SNX1-213ENST00000561026 A0A1B0GVT2 93 aa16.77■□□□□ 0.27
SNX1-213ENST00000561026 KCNU1A8MYU2 1149 aa16.77■□□□□ 0.27
SNX1-213ENST00000561026 RNASEH1O60930 286 aaKnown RBP16.77■□□□□ 0.27
SNX1-213ENST00000561026 SIN3BO75182 1162 aa16.77■□□□□ 0.27
SNX1-213ENST00000561026 MOCS3O95396 460 aa16.77■□□□□ 0.27
SNX1-213ENST00000561026 GLI1P08151 1106 aa16.77■□□□□ 0.27
SNX1-213ENST00000561026 SRPRAP08240 638 aaKnown RBP16.77■□□□□ 0.27
SNX1-213ENST00000561026 SLC2A3P11169 496 aa16.77■□□□□ 0.27
SNX1-213ENST00000561026 CTSOP43234 321 aaPredicted RBP16.77■□□□□ 0.27
SNX1-213ENST00000561026 CDK17Q00537 523 aa16.77■□□□□ 0.27
SNX1-213ENST00000561026 ECT2LQ008S8 904 aa16.77■□□□□ 0.27
SNX1-213ENST00000561026 C9orf64Q5T6V5 341 aa16.77■□□□□ 0.27
SNX1-213ENST00000561026 USP30Q70CQ3 517 aa16.77■□□□□ 0.27
SNX1-213ENST00000561026 CHSY1Q86X52 802 aa16.77■□□□□ 0.27
SNX1-213ENST00000561026 ATP6V0D2Q8N8Y2 350 aa16.77■□□□□ 0.27
SNX1-213ENST00000561026 PPP1R13BQ96KQ4 1090 aa16.77■□□□□ 0.27
SNX1-213ENST00000561026 SLC2A13Q96QE2 648 aa16.77■□□□□ 0.27
SNX1-213ENST00000561026 PRMT1Q99873 361 aaKnown RBP16.77■□□□□ 0.27
SNX1-213ENST00000561026 PABPC3Q9H361 631 aaKnown RBP16.77■□□□□ 0.27
SNX1-213ENST00000561026 ASNSD1Q9NWL6 643 aa16.77■□□□□ 0.27
SNX1-213ENST00000561026 KLK13Q9UKR3 277 aa16.77■□□□□ 0.27
SNX1-213ENST00000561026 ZMIZ1Q9ULJ6 1067 aa16.77■□□□□ 0.27
SNX1-213ENST00000561026 NCKAP1Q9Y2A7 1128 aa16.77■□□□□ 0.27
SNX1-213ENST00000561026 FNDC3AQ9Y2H6 1198 aaKnown RBP16.77■□□□□ 0.27
SNX1-213ENST00000561026 TARSL2A2RTX5 802 aaKnown RBP16.76■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms