RNA–Protein interactions for RNA: ENST00000560467.1

LDLR-212, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 928 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-212ENST00000560467 IRX2Q9BZI1 471 aaPredicted RBP12.24□□□□□ -0.45
LDLR-212ENST00000560467 POPDC2Q9HBU9 364 aa12.24□□□□□ -0.45
LDLR-212ENST00000560467 OSGEPQ9NPF4 335 aa12.24□□□□□ -0.45
LDLR-212ENST00000560467 TMEM9BQ9NQ34 198 aa12.24□□□□□ -0.45
LDLR-212ENST00000560467 METTL5Q9NRN9 209 aaKnown RBP12.24□□□□□ -0.45
LDLR-212ENST00000560467 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP12.24□□□□□ -0.45
LDLR-212ENST00000560467 CYTH4Q9UIA0 394 aa12.24□□□□□ -0.45
LDLR-212ENST00000560467 ZMIZ1Q9ULJ6 1067 aa12.24□□□□□ -0.45
LDLR-212ENST00000560467 ARHGAP26Q9UNA1 814 aa12.24□□□□□ -0.45
LDLR-212ENST00000560467 WASF3Q9UPY6 502 aa12.24□□□□□ -0.45
LDLR-212ENST00000560467 ALG6Q9Y672 507 aa12.24□□□□□ -0.45
LDLR-212ENST00000560467 LAMA1P25391 3075 aa12.24□□□□□ -0.45
LDLR-212ENST00000560467 PKD1L2Q7Z442 2459 aa12.23□□□□□ -0.45
LDLR-212ENST00000560467 LEFTY2O00292 366 aa12.23□□□□□ -0.45
LDLR-212ENST00000560467 TULP2O00295 520 aa12.23□□□□□ -0.45
LDLR-212ENST00000560467 CDX4O14627 284 aaPredicted RBP12.23□□□□□ -0.45
LDLR-212ENST00000560467 PAPSS1O43252 624 aaPredicted RBP12.23□□□□□ -0.45
LDLR-212ENST00000560467 BEST1O76090 585 aa12.23□□□□□ -0.45
LDLR-212ENST00000560467 URI1O94763 535 aaPredicted RBP12.23□□□□□ -0.45
LDLR-212ENST00000560467 PROSCO94903 275 aa12.23□□□□□ -0.45
LDLR-212ENST00000560467 NFATC1O95644 943 aa12.23□□□□□ -0.45
LDLR-212ENST00000560467 F9P00740 461 aa12.23□□□□□ -0.45
LDLR-212ENST00000560467 CYP17A1P05093 508 aa12.23□□□□□ -0.45
LDLR-212ENST00000560467 RALAP11233 206 aa12.23□□□□□ -0.45
LDLR-212ENST00000560467 TCP1P17987 556 aaKnown RBP12.23□□□□□ -0.45
LDLR-212ENST00000560467 HDCP19113 662 aa12.23□□□□□ -0.45
LDLR-212ENST00000560467 PPP3CCP48454 512 aa12.23□□□□□ -0.45
LDLR-212ENST00000560467 DHPSP49366 369 aaPredicted RBP12.23□□□□□ -0.45
LDLR-212ENST00000560467 ZNF143P52747 638 aaPredicted RBP12.23□□□□□ -0.45
LDLR-212ENST00000560467 USP46P62068 366 aa12.23□□□□□ -0.45
LDLR-212ENST00000560467 IRX4P78413 519 aa12.23□□□□□ -0.45
LDLR-212ENST00000560467 MESP2Q0VG99 397 aa12.23□□□□□ -0.45
LDLR-212ENST00000560467 IFRD2Q12894 506 aaPredicted RBP12.23□□□□□ -0.45
LDLR-212ENST00000560467 NR1H3Q13133 447 aa12.23□□□□□ -0.45
LDLR-212ENST00000560467 UAP1L1Q3KQV9 507 aa12.23□□□□□ -0.45
LDLR-212ENST00000560467 BTBD8Q5XKL5 378 aa12.23□□□□□ -0.45
LDLR-212ENST00000560467 KIAA1211LQ6NV74 962 aa12.23□□□□□ -0.45
LDLR-212ENST00000560467 RSRC2Q7L4I2 434 aaKnown RBP12.23□□□□□ -0.45
LDLR-212ENST00000560467 RASSF3Q86WH2 238 aa12.23□□□□□ -0.45
LDLR-212ENST00000560467 SCML4Q8N228 414 aa12.23□□□□□ -0.45
LDLR-212ENST00000560467 PDZD8Q8NEN9 1154 aa12.23□□□□□ -0.45
LDLR-212ENST00000560467 DEFB124Q8NES8 71 aa12.23□□□□□ -0.45
LDLR-212ENST00000560467 PIGKQ92643 395 aa12.23□□□□□ -0.45
LDLR-212ENST00000560467 CDK5RAP1Q96SZ6 601 aaKnown RBP12.23□□□□□ -0.45
LDLR-212ENST00000560467 TMEM121BQ9BXQ6 578 aaPredicted RBP12.23□□□□□ -0.45
LDLR-212ENST00000560467 ULBP1Q9BZM6 244 aa12.23□□□□□ -0.45
LDLR-212ENST00000560467 TLR8Q9NR97 1041 aaKnown RBP12.23□□□□□ -0.45
LDLR-212ENST00000560467 MMP17Q9ULZ9 603 aa12.23□□□□□ -0.45
LDLR-212ENST00000560467 SAR1BQ9Y6B6 198 aa12.23□□□□□ -0.45
LDLR-212ENST00000560467 CACNA1EQ15878 2313 aa12.23□□□□□ -0.45
LDLR-212ENST00000560467 ASPMQ8IZT6 3477 aa12.23□□□□□ -0.45
LDLR-212ENST00000560467 BAHCC1Q9P281 2608 aa12.23□□□□□ -0.45
LDLR-212ENST00000560467 A0A0U1RQJ8 604 aa12.22□□□□□ -0.45
LDLR-212ENST00000560467 CCDC66A2RUB6 948 aa12.22□□□□□ -0.45
LDLR-212ENST00000560467 GRID2IPA4D2P6 1211 aa12.22□□□□□ -0.45
LDLR-212ENST00000560467 ABL1P00519 1130 aa12.22□□□□□ -0.45
LDLR-212ENST00000560467 KRT7P08729 469 aa12.22□□□□□ -0.45
LDLR-212ENST00000560467 CHRM1P11229 460 aaPredicted RBP12.22□□□□□ -0.45
LDLR-212ENST00000560467 HOXB3P14651 431 aaPredicted RBP12.22□□□□□ -0.45
LDLR-212ENST00000560467 TCF3P15923 654 aa12.22□□□□□ -0.45
LDLR-212ENST00000560467 COMTP21964 271 aa12.22□□□□□ -0.45
LDLR-212ENST00000560467 NOS2P35228 1153 aa12.22□□□□□ -0.45
LDLR-212ENST00000560467 RFC1P35251 1148 aaPredicted RBP12.22□□□□□ -0.45
LDLR-212ENST00000560467 MATKP42679 507 aa12.22□□□□□ -0.45
LDLR-212ENST00000560467 PAFAH1B1P43034 410 aa12.22□□□□□ -0.45
LDLR-212ENST00000560467 SLC5A3P53794 718 aa12.22□□□□□ -0.45
LDLR-212ENST00000560467 CRY1Q16526 586 aa12.22□□□□□ -0.45
LDLR-212ENST00000560467 DCAF6Q58WW2 860 aa12.22□□□□□ -0.45
LDLR-212ENST00000560467 RAB41Q5JT25 222 aa12.22□□□□□ -0.45
LDLR-212ENST00000560467 CCDC181Q5TID7 509 aa12.22□□□□□ -0.45
LDLR-212ENST00000560467 OLFML1Q6UWY5 402 aa12.22□□□□□ -0.45
LDLR-212ENST00000560467 TMEM92Q6UXU6 159 aa12.22□□□□□ -0.45
LDLR-212ENST00000560467 ARMCX6Q7L4S7 300 aa12.22□□□□□ -0.45
LDLR-212ENST00000560467 C11orf74Q86VG3 221 aa12.22□□□□□ -0.45
LDLR-212ENST00000560467 RHOT1Q8IXI2 618 aa12.22□□□□□ -0.45
LDLR-212ENST00000560467 ALLCQ8N6M5 410 aa12.22□□□□□ -0.45
LDLR-212ENST00000560467 FRMD1Q8N878 549 aa12.22□□□□□ -0.45
LDLR-212ENST00000560467 KDF1Q8NAX2 398 aaPredicted RBP12.22□□□□□ -0.45
LDLR-212ENST00000560467 RXFP2Q8WXD0 754 aa12.22□□□□□ -0.45
LDLR-212ENST00000560467 RLN3Q8WXF3 142 aa12.22□□□□□ -0.45
LDLR-212ENST00000560467 WDR24Q96S15 920 aa12.22□□□□□ -0.45
LDLR-212ENST00000560467 NAP1L3Q99457 506 aaPredicted RBP12.22□□□□□ -0.45
LDLR-212ENST00000560467 ADAM33Q9BZ11 813 aa12.22□□□□□ -0.45
LDLR-212ENST00000560467 ZDHHC4Q9NPG8 344 aa12.22□□□□□ -0.45
LDLR-212ENST00000560467 ABCC13Q9NSE7 274 aa12.22□□□□□ -0.45
LDLR-212ENST00000560467 SMPD4Q9NXE4 827 aa12.22□□□□□ -0.45
LDLR-212ENST00000560467 RNF14Q9UBS8 474 aa12.22□□□□□ -0.45
LDLR-212ENST00000560467 CHORDC1Q9UHD1 332 aaPredicted RBP12.22□□□□□ -0.45
LDLR-212ENST00000560467 SCML2Q9UQR0 700 aa12.22□□□□□ -0.45
LDLR-212ENST00000560467 CAPN6Q9Y6Q1 641 aa12.22□□□□□ -0.45
LDLR-212ENST00000560467 SPEGQ15772 3267 aa12.22□□□□□ -0.45
LDLR-212ENST00000560467 ATXN2Q99700 1313 aaKnown RBP12.21□□□□□ -0.45
LDLR-212ENST00000560467 PRPSAP2O60256 369 aa12.21□□□□□ -0.45
LDLR-212ENST00000560467 GRAP2O75791 330 aa12.21□□□□□ -0.45
LDLR-212ENST00000560467 KLF8O95600 359 aaPredicted RBP12.21□□□□□ -0.45
LDLR-212ENST00000560467 FTCDO95954 541 aa12.21□□□□□ -0.45
LDLR-212ENST00000560467 LTFP02788 710 aa12.21□□□□□ -0.45
LDLR-212ENST00000560467 NCAM1P13591 858 aa12.21□□□□□ -0.45
LDLR-212ENST00000560467 PRLRP16471 622 aa12.21□□□□□ -0.45
LDLR-212ENST00000560467 CSRP1P21291 193 aaKnown RBP12.21□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms