RNA–Protein interactions for RNA: ENST00000557713.5

SCFD1-224, Transcript of sec1 family domain containing 1, humanhuman

TSL 4

Gene SCFD1, Length 556 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-224ENST00000557713 PABPC3Q9H361 631 aaKnown RBP16.55■□□□□ 0.24
SCFD1-224ENST00000557713 SCML1Q9UN30 329 aa16.55■□□□□ 0.24
SCFD1-224ENST00000557713 NCKAP1Q9Y2A7 1128 aa16.55■□□□□ 0.24
SCFD1-224ENST00000557713 TLR6Q9Y2C9 796 aa16.55■□□□□ 0.24
SCFD1-224ENST00000557713 NBEAQ8NFP9 2946 aa16.55■□□□□ 0.24
SCFD1-224ENST00000557713 NUMA1Q14980 2115 aa16.54■□□□□ 0.24
SCFD1-224ENST00000557713 H0Y8X5 98 aa16.54■□□□□ 0.24
SCFD1-224ENST00000557713 P4HA2O15460 535 aa16.54■□□□□ 0.24
SCFD1-224ENST00000557713 PCDHGA12O60330 932 aa16.54■□□□□ 0.24
SCFD1-224ENST00000557713 SIN3BO75182 1162 aa16.54■□□□□ 0.24
SCFD1-224ENST00000557713 ASLP04424 464 aa16.54■□□□□ 0.24
SCFD1-224ENST00000557713 CSKP41240 450 aa16.54■□□□□ 0.24
SCFD1-224ENST00000557713 GPD2P43304 727 aa16.54■□□□□ 0.24
SCFD1-224ENST00000557713 ST8SIA6P61647 398 aa16.54■□□□□ 0.24
SCFD1-224ENST00000557713 RPS24P62847 133 aaKnown RBP16.54■□□□□ 0.24
SCFD1-224ENST00000557713 FSCBQ5H9T9 825 aa16.54■□□□□ 0.24
SCFD1-224ENST00000557713 MS4A13Q5J8X5 152 aa16.54■□□□□ 0.24
SCFD1-224ENST00000557713 KIAA0895LQ68EN5 471 aa16.54■□□□□ 0.24
SCFD1-224ENST00000557713 LAYNQ6UX15 382 aa16.54■□□□□ 0.24
SCFD1-224ENST00000557713 RRAGAQ7L523 313 aa16.54■□□□□ 0.24
SCFD1-224ENST00000557713 ARHGEF19Q8IW93 802 aa16.54■□□□□ 0.24
SCFD1-224ENST00000557713 SCUBE3Q8IX30 993 aa16.54■□□□□ 0.24
SCFD1-224ENST00000557713 EHBP1Q8NDI1 1231 aa16.54■□□□□ 0.24
SCFD1-224ENST00000557713 TIGD1Q96MW7 591 aa16.54■□□□□ 0.24
SCFD1-224ENST00000557713 DDX50Q9BQ39 737 aaKnown RBP16.54■□□□□ 0.24
SCFD1-224ENST00000557713 NAALADL1Q9UQQ1 740 aa16.54■□□□□ 0.24
SCFD1-224ENST00000557713 PTPRBP23467 1997 aa16.54■□□□□ 0.24
SCFD1-224ENST00000557713 C10orf142B7Z368 130 aa16.53■□□□□ 0.24
SCFD1-224ENST00000557713 PSMA7O14818 248 aa16.53■□□□□ 0.24
SCFD1-224ENST00000557713 GRK6P43250 576 aa16.53■□□□□ 0.24
SCFD1-224ENST00000557713 GALCP54803 685 aa16.53■□□□□ 0.24
SCFD1-224ENST00000557713 RACK1P63244 317 aaKnown RBP16.53■□□□□ 0.24
SCFD1-224ENST00000557713 GCNT1Q02742 428 aa16.53■□□□□ 0.24
SCFD1-224ENST00000557713 NNTQ13423 1086 aa16.53■□□□□ 0.24
SCFD1-224ENST00000557713 DCAF6Q58WW2 860 aa16.53■□□□□ 0.24
SCFD1-224ENST00000557713 C9orf64Q5T6V5 341 aa16.53■□□□□ 0.24
SCFD1-224ENST00000557713 ISM2Q6H9L7 571 aa16.53■□□□□ 0.24
SCFD1-224ENST00000557713 BEND5Q7L4P6 421 aa16.53■□□□□ 0.24
SCFD1-224ENST00000557713 DHX40Q8IX18 779 aaKnown RBP16.53■□□□□ 0.24
SCFD1-224ENST00000557713 CFAP52Q8N1V2 620 aa16.53■□□□□ 0.24
SCFD1-224ENST00000557713 CARNMT1Q8N4J0 409 aa16.53■□□□□ 0.24
SCFD1-224ENST00000557713 MDM1Q8TC05 714 aa16.53■□□□□ 0.24
SCFD1-224ENST00000557713 SERPINB11Q96P15 392 aa16.53■□□□□ 0.24
SCFD1-224ENST00000557713 NUCKS1Q9H1E3 243 aaKnown RBP16.53■□□□□ 0.24
SCFD1-224ENST00000557713 EBF2Q9HAK2 575 aa16.53■□□□□ 0.24
SCFD1-224ENST00000557713 FBXL12Q9NXK8 326 aa16.53■□□□□ 0.24
SCFD1-224ENST00000557713 SERGEFQ9UGK8 458 aa16.53■□□□□ 0.24
SCFD1-224ENST00000557713 CNTN6Q9UQ52 1028 aa16.53■□□□□ 0.24
SCFD1-224ENST00000557713 ERVW-1Q9UQF0 538 aa16.53■□□□□ 0.24
SCFD1-224ENST00000557713 ANKRD11Q6UB99 2663 aaPredicted RBP16.53■□□□□ 0.24
SCFD1-224ENST00000557713 CACNA1GO43497 2377 aa16.52■□□□□ 0.24
SCFD1-224ENST00000557713 A0A1W2PPC4 97 aa16.52■□□□□ 0.24
SCFD1-224ENST00000557713 TARSL2A2RTX5 802 aaKnown RBP16.52■□□□□ 0.24
SCFD1-224ENST00000557713 GOLGA6L4A6NEF3 574 aa16.52■□□□□ 0.24
SCFD1-224ENST00000557713 GOLGA8CPA6NN73 597 aa16.52■□□□□ 0.24
SCFD1-224ENST00000557713 VILLO15195 856 aa16.52■□□□□ 0.24
SCFD1-224ENST00000557713 PAPSS1O43252 624 aaPredicted RBP16.52■□□□□ 0.24
SCFD1-224ENST00000557713 TNFSF14O43557 240 aa16.52■□□□□ 0.24
SCFD1-224ENST00000557713 RNASEH1O60930 286 aaKnown RBP16.52■□□□□ 0.24
SCFD1-224ENST00000557713 SRPRAP08240 638 aaKnown RBP16.52■□□□□ 0.24
SCFD1-224ENST00000557713 CTSOP43234 321 aaPredicted RBP16.52■□□□□ 0.24
SCFD1-224ENST00000557713 CCT8P50990 548 aa16.52■□□□□ 0.24
SCFD1-224ENST00000557713 CETN1Q12798 172 aa16.52■□□□□ 0.24
SCFD1-224ENST00000557713 STIM1Q13586 685 aa16.52■□□□□ 0.24
SCFD1-224ENST00000557713 CST6Q15828 149 aa16.52■□□□□ 0.24
SCFD1-224ENST00000557713 CCDC40Q4G0X9 1142 aa16.52■□□□□ 0.24
SCFD1-224ENST00000557713 PITRM1Q5JRX3 1037 aa16.52■□□□□ 0.24
SCFD1-224ENST00000557713 SYPL2Q5VXT5 272 aa16.52■□□□□ 0.24
SCFD1-224ENST00000557713 TTI2Q6NXR4 508 aa16.52■□□□□ 0.24
SCFD1-224ENST00000557713 C19orf48Q6RUI8 117 aa16.52■□□□□ 0.24
SCFD1-224ENST00000557713 MMS22LQ6ZRQ5 1243 aa16.52■□□□□ 0.24
SCFD1-224ENST00000557713 MARCH9Q86YJ5 346 aa16.52■□□□□ 0.24
SCFD1-224ENST00000557713 KREMEN1Q96MU8 473 aa16.52■□□□□ 0.24
SCFD1-224ENST00000557713 FAM129BQ96TA1 746 aa16.52■□□□□ 0.24
SCFD1-224ENST00000557713 NEUROG2Q9H2A3 272 aa16.52■□□□□ 0.24
SCFD1-224ENST00000557713 DKK4Q9UBT3 224 aa16.52■□□□□ 0.24
SCFD1-224ENST00000557713 ADAMTS1Q9UHI8 967 aa16.52■□□□□ 0.24
SCFD1-224ENST00000557713 TMEM131Q92545 1883 aa16.52■□□□□ 0.23
SCFD1-224ENST00000557713 ITIH6Q6UXX5 1313 aa16.51■□□□□ 0.23
SCFD1-224ENST00000557713 ADAMTS20P59510 1910 aa16.51■□□□□ 0.23
SCFD1-224ENST00000557713 TYW5A2RUC4 315 aaKnown RBP16.51■□□□□ 0.23
SCFD1-224ENST00000557713 TTC34A8MYJ7 566 aa16.51■□□□□ 0.23
SCFD1-224ENST00000557713 PPP1R3GB7ZBB8 358 aa16.51■□□□□ 0.23
SCFD1-224ENST00000557713 MID1O15344 667 aa16.51■□□□□ 0.23
SCFD1-224ENST00000557713 SART1O43290 800 aaKnown RBP16.51■□□□□ 0.23
SCFD1-224ENST00000557713 DFNA5O60443 496 aa16.51■□□□□ 0.23
SCFD1-224ENST00000557713 LUC7L3O95232 432 aaKnown RBP16.51■□□□□ 0.23
SCFD1-224ENST00000557713 PPP1R2P41236 205 aa16.51■□□□□ 0.23
SCFD1-224ENST00000557713 SFSWAPQ12872 951 aaKnown RBP16.51■□□□□ 0.23
SCFD1-224ENST00000557713 CAMK2BQ13554 666 aa16.51■□□□□ 0.23
SCFD1-224ENST00000557713 NCEH1Q6PIU2 408 aa16.51■□□□□ 0.23
SCFD1-224ENST00000557713 FOXR2Q6PJQ5 311 aa16.51■□□□□ 0.23
SCFD1-224ENST00000557713 TAC4Q86UU9 113 aa16.51■□□□□ 0.23
SCFD1-224ENST00000557713 ELOA2Q8IYF1 753 aaPredicted RBP16.51■□□□□ 0.23
SCFD1-224ENST00000557713 GALNT15Q8N3T1 639 aa16.51■□□□□ 0.23
SCFD1-224ENST00000557713 ADAM32Q8TC27 787 aa16.51■□□□□ 0.23
SCFD1-224ENST00000557713 GANCQ8TET4 914 aa16.51■□□□□ 0.23
SCFD1-224ENST00000557713 STK32AQ8WU08 396 aa16.51■□□□□ 0.23
SCFD1-224ENST00000557713 SLC4A5Q9BY07 1137 aa16.51■□□□□ 0.23
SCFD1-224ENST00000557713 XPO7Q9UIA9 1087 aaKnown RBP16.51■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 9.8 ms