RNA–Protein interactions for RNA: ENST00000550914.6

PTCH1-221, Transcript of patched 1, humanhuman

TSL 2

Gene PTCH1, Length 630 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-221ENST00000550914 NT5C1BQ96P26 610 aa13.35□□□□□ -0.27
PTCH1-221ENST00000550914 PABPC3Q9H361 631 aaKnown RBP13.35□□□□□ -0.27
PTCH1-221ENST00000550914 NCKAP1Q9Y2A7 1128 aa13.35□□□□□ -0.27
PTCH1-221ENST00000550914 SLCO1B1Q9Y6L6 691 aa13.35□□□□□ -0.27
PTCH1-221ENST00000550914 ARID1BQ8NFD5 2236 aaPredicted RBP13.35□□□□□ -0.27
PTCH1-221ENST00000550914 KALRNO60229 2985 aa13.34□□□□□ -0.27
PTCH1-221ENST00000550914 M0QYV0 167 aa13.34□□□□□ -0.27
PTCH1-221ENST00000550914 P4HA2O15460 535 aa13.34□□□□□ -0.27
PTCH1-221ENST00000550914 SART1O43290 800 aaKnown RBP13.34□□□□□ -0.27
PTCH1-221ENST00000550914 ATXN1LP0C7T5 689 aaKnown RBP13.34□□□□□ -0.27
PTCH1-221ENST00000550914 SLC6A4P31645 630 aa13.34□□□□□ -0.27
PTCH1-221ENST00000550914 PPP1R2P41236 205 aa13.34□□□□□ -0.27
PTCH1-221ENST00000550914 CTSKP43235 329 aa13.34□□□□□ -0.27
PTCH1-221ENST00000550914 RPL34P49207 117 aaKnown RBP13.34□□□□□ -0.27
PTCH1-221ENST00000550914 RGS7P49802 495 aa13.34□□□□□ -0.27
PTCH1-221ENST00000550914 ST8SIA6P61647 398 aa13.34□□□□□ -0.27
PTCH1-221ENST00000550914 RACK1P63244 317 aaKnown RBP13.34□□□□□ -0.27
PTCH1-221ENST00000550914 CETN1Q12798 172 aa13.34□□□□□ -0.27
PTCH1-221ENST00000550914 LRMPQ12912 555 aa13.34□□□□□ -0.27
PTCH1-221ENST00000550914 STIM1Q13586 685 aa13.34□□□□□ -0.27
PTCH1-221ENST00000550914 COL9A2Q14055 689 aaPredicted RBP13.34□□□□□ -0.27
PTCH1-221ENST00000550914 HNRNPA1L2Q32P51 320 aaKnown RBP13.34□□□□□ -0.27
PTCH1-221ENST00000550914 KIAA0895LQ68EN5 471 aa13.34□□□□□ -0.27
PTCH1-221ENST00000550914 BEND5Q7L4P6 421 aa13.34□□□□□ -0.27
PTCH1-221ENST00000550914 ORAI3Q9BRQ5 295 aa13.34□□□□□ -0.27
PTCH1-221ENST00000550914 TRIM62Q9BVG3 475 aa13.34□□□□□ -0.27
PTCH1-221ENST00000550914 HOOK1Q9UJC3 728 aaKnown RBP13.34□□□□□ -0.27
PTCH1-221ENST00000550914 TPX2Q9ULW0 747 aaKnown RBP13.34□□□□□ -0.27
PTCH1-221ENST00000550914 TLR6Q9Y2C9 796 aa13.34□□□□□ -0.27
PTCH1-221ENST00000550914 PCDHB4Q9Y5E5 795 aa13.34□□□□□ -0.27
PTCH1-221ENST00000550914 HELZ2Q9BYK8 2649 aaKnown RBP13.34□□□□□ -0.27
PTCH1-221ENST00000550914 BPTFQ12830 3046 aa13.33□□□□□ -0.28
PTCH1-221ENST00000550914 GOLGA6L7A0A1B0GV03 622 aa13.33□□□□□ -0.28
PTCH1-221ENST00000550914 A0A1W2PPC4 97 aa13.33□□□□□ -0.28
PTCH1-221ENST00000550914 TARSL2A2RTX5 802 aaKnown RBP13.33□□□□□ -0.28
PTCH1-221ENST00000550914 PSMA7O14818 248 aa13.33□□□□□ -0.28
PTCH1-221ENST00000550914 VILLO15195 856 aa13.33□□□□□ -0.28
PTCH1-221ENST00000550914 FSBPO95073 299 aa13.33□□□□□ -0.28
PTCH1-221ENST00000550914 IGHV4-34P06331 123 aa13.33□□□□□ -0.28
PTCH1-221ENST00000550914 SRPRAP08240 638 aaKnown RBP13.33□□□□□ -0.28
PTCH1-221ENST00000550914 HOXB3P14651 431 aaPredicted RBP13.33□□□□□ -0.28
PTCH1-221ENST00000550914 CSKP41240 450 aa13.33□□□□□ -0.28
PTCH1-221ENST00000550914 GCNT1Q02742 428 aa13.33□□□□□ -0.28
PTCH1-221ENST00000550914 ACAP1Q15027 740 aa13.33□□□□□ -0.28
PTCH1-221ENST00000550914 MEA1Q16626 185 aa13.33□□□□□ -0.28
PTCH1-221ENST00000550914 NADSYN1Q6IA69 706 aa13.33□□□□□ -0.28
PTCH1-221ENST00000550914 FOXR2Q6PJQ5 311 aa13.33□□□□□ -0.28
PTCH1-221ENST00000550914 ADAT2Q7Z6V5 191 aaKnown RBP13.33□□□□□ -0.28
PTCH1-221ENST00000550914 CCDC117Q8IWD4 279 aaPredicted RBP13.33□□□□□ -0.28
PTCH1-221ENST00000550914 PPM1KQ8N3J5 372 aa13.33□□□□□ -0.28
PTCH1-221ENST00000550914 LMO3Q8TAP4 145 aa13.33□□□□□ -0.28
PTCH1-221ENST00000550914 SMARCE1Q969G3 411 aa13.33□□□□□ -0.28
PTCH1-221ENST00000550914 SKA1Q96BD8 255 aa13.33□□□□□ -0.28
PTCH1-221ENST00000550914 SLC39A13Q96H72 371 aa13.33□□□□□ -0.28
PTCH1-221ENST00000550914 DHTKD1Q96HY7 919 aaPredicted RBP13.33□□□□□ -0.28
PTCH1-221ENST00000550914 FCRL2Q96LA5 508 aaPredicted RBP13.33□□□□□ -0.28
PTCH1-221ENST00000550914 MRGPRX3Q96LB0 322 aa13.33□□□□□ -0.28
PTCH1-221ENST00000550914 PRICKLE1Q96MT3 831 aaPredicted RBP13.33□□□□□ -0.28
PTCH1-221ENST00000550914 ZSWIM1Q9BR11 485 aa13.33□□□□□ -0.28
PTCH1-221ENST00000550914 ACE2Q9BYF1 805 aaPredicted RBP13.33□□□□□ -0.28
PTCH1-221ENST00000550914 SCUBE2Q9NQ36 999 aa13.33□□□□□ -0.28
PTCH1-221ENST00000550914 FBXL12Q9NXK8 326 aa13.33□□□□□ -0.28
PTCH1-221ENST00000550914 ADAMTS1Q9UHI8 967 aa13.33□□□□□ -0.28
PTCH1-221ENST00000550914 FZD4Q9ULV1 537 aa13.33□□□□□ -0.28
PTCH1-221ENST00000550914 BTBD3Q9Y2F9 522 aa13.33□□□□□ -0.28
PTCH1-221ENST00000550914 ITIH6Q6UXX5 1313 aa13.33□□□□□ -0.28
PTCH1-221ENST00000550914 TRIM49BA6NDI0 452 aa13.32□□□□□ -0.28
PTCH1-221ENST00000550914 LRRC72A6NJI9 287 aa13.32□□□□□ -0.28
PTCH1-221ENST00000550914 C10orf142B7Z368 130 aa13.32□□□□□ -0.28
PTCH1-221ENST00000550914 E9PAM4 449 aa13.32□□□□□ -0.28
PTCH1-221ENST00000550914 H0Y8X5 98 aa13.32□□□□□ -0.28
PTCH1-221ENST00000550914 RNF225M0QZC1 329 aaPredicted RBP13.32□□□□□ -0.28
PTCH1-221ENST00000550914 MOCS3O95396 460 aa13.32□□□□□ -0.28
PTCH1-221ENST00000550914 FYNP06241 537 aa13.32□□□□□ -0.28
PTCH1-221ENST00000550914 ACADSBP45954 432 aa13.32□□□□□ -0.28
PTCH1-221ENST00000550914 GALCP54803 685 aa13.32□□□□□ -0.28
PTCH1-221ENST00000550914 CDH18Q13634 790 aa13.32□□□□□ -0.28
PTCH1-221ENST00000550914 SMAD1Q15797 465 aaKnown RBP13.32□□□□□ -0.28
PTCH1-221ENST00000550914 CST6Q15828 149 aa13.32□□□□□ -0.28
PTCH1-221ENST00000550914 MS4A13Q5J8X5 152 aa13.32□□□□□ -0.28
PTCH1-221ENST00000550914 C9orf64Q5T6V5 341 aa13.32□□□□□ -0.28
PTCH1-221ENST00000550914 MDM1Q8TC05 714 aa13.32□□□□□ -0.28
PTCH1-221ENST00000550914 DQX1Q8TE96 717 aaKnown RBP13.32□□□□□ -0.28
PTCH1-221ENST00000550914 CLEC4CQ8WTT0 213 aa13.32□□□□□ -0.28
PTCH1-221ENST00000550914 TIGD1Q96MW7 591 aa13.32□□□□□ -0.28
PTCH1-221ENST00000550914 GDPD2Q9HCC8 539 aa13.32□□□□□ -0.28
PTCH1-221ENST00000550914 STIM2Q9P246 746 aa13.32□□□□□ -0.28
PTCH1-221ENST00000550914 INTS6Q9UL03 887 aaKnown RBP13.32□□□□□ -0.28
PTCH1-221ENST00000550914 A0A1B0GTQ1 180 aa13.31□□□□□ -0.28
PTCH1-221ENST00000550914 EDDM13A0A1B0GTR0 161 aa13.31□□□□□ -0.28
PTCH1-221ENST00000550914 GOLGA6L4A6NEF3 574 aa13.31□□□□□ -0.28
PTCH1-221ENST00000550914 PIK3R2O00459 728 aa13.31□□□□□ -0.28
PTCH1-221ENST00000550914 YKT6O15498 198 aa13.31□□□□□ -0.28
PTCH1-221ENST00000550914 SIN3BO75182 1162 aa13.31□□□□□ -0.28
PTCH1-221ENST00000550914 LUC7L3O95232 432 aaKnown RBP13.31□□□□□ -0.28
PTCH1-221ENST00000550914 CDK4P11802 303 aa13.31□□□□□ -0.28
PTCH1-221ENST00000550914 BRD2P25440 801 aaKnown RBP13.31□□□□□ -0.28
PTCH1-221ENST00000550914 CCR5P51681 352 aa13.31□□□□□ -0.28
PTCH1-221ENST00000550914 C21orf59P57076 290 aa13.31□□□□□ -0.28
PTCH1-221ENST00000550914 RPS24P62847 133 aaKnown RBP13.31□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms