RNA–Protein interactions for RNA: ENST00000546588.1

VPS29-203, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 1,059 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-203ENST00000546588 AIF1P55008 147 aa8.78□□□□□ -1
VPS29-203ENST00000546588 NAP1L1P55209 391 aaKnown RBP8.78□□□□□ -1
VPS29-203ENST00000546588 RWDD2BP57060 319 aa8.78□□□□□ -1
VPS29-203ENST00000546588 DAOAP59103 153 aa8.78□□□□□ -1
VPS29-203ENST00000546588 DSG1Q02413 1049 aa8.78□□□□□ -1
VPS29-203ENST00000546588 MESDQ14696 234 aa8.78□□□□□ -1
VPS29-203ENST00000546588 CCDC142Q17RM4 750 aa8.78□□□□□ -1
VPS29-203ENST00000546588 USP41Q3LFD5 358 aa8.78□□□□□ -1
VPS29-203ENST00000546588 PAN2Q504Q3 1202 aaKnown RBP8.78□□□□□ -1
VPS29-203ENST00000546588 C2CD6Q53TS8 623 aa8.78□□□□□ -1
VPS29-203ENST00000546588 RTP2Q5QGT7 225 aa8.78□□□□□ -1
VPS29-203ENST00000546588 OTUD1Q5VV17 481 aaPredicted RBP8.78□□□□□ -1
VPS29-203ENST00000546588 KCNT2Q6UVM3 1135 aa8.78□□□□□ -1
VPS29-203ENST00000546588 STRADAQ7RTN6 431 aa8.78□□□□□ -1
VPS29-203ENST00000546588 DDX53Q86TM3 631 aaKnown RBP8.78□□□□□ -1
VPS29-203ENST00000546588 PDZD3Q86UT5 571 aa8.78□□□□□ -1
VPS29-203ENST00000546588 RHOT1Q8IXI2 618 aa8.78□□□□□ -1
VPS29-203ENST00000546588 LILRB2Q8N423 598 aa8.78□□□□□ -1
VPS29-203ENST00000546588 ZNF276Q8N554 614 aa8.78□□□□□ -1
VPS29-203ENST00000546588 IL22RA1Q8N6P7 574 aa8.78□□□□□ -1
VPS29-203ENST00000546588 COLGALT1Q8NBJ5 622 aa8.78□□□□□ -1
VPS29-203ENST00000546588 SPATA4Q8NEY3 305 aa8.78□□□□□ -1
VPS29-203ENST00000546588 EXD1Q8NHP7 514 aa8.78□□□□□ -1
VPS29-203ENST00000546588 HASPINQ8TF76 798 aa8.78□□□□□ -1
VPS29-203ENST00000546588 TEKT4Q8WW24 435 aa8.78□□□□□ -1
VPS29-203ENST00000546588 RABGGTAQ92696 567 aa8.78□□□□□ -1
VPS29-203ENST00000546588 KRT35Q92764 455 aa8.78□□□□□ -1
VPS29-203ENST00000546588 SLCO2A1Q92959 643 aa8.78□□□□□ -1
VPS29-203ENST00000546588 SPATA17Q96L03 361 aa8.78□□□□□ -1
VPS29-203ENST00000546588 TBCBQ99426 244 aa8.78□□□□□ -1
VPS29-203ENST00000546588 NAP1L3Q99457 506 aaPredicted RBP8.78□□□□□ -1
VPS29-203ENST00000546588 NPY6RQ99463 290 aa8.78□□□□□ -1
VPS29-203ENST00000546588 TTPALQ9BTX7 342 aa8.78□□□□□ -1
VPS29-203ENST00000546588 HTATIP2Q9BUP3 242 aa8.78□□□□□ -1
VPS29-203ENST00000546588 TRIM62Q9BVG3 475 aa8.78□□□□□ -1
VPS29-203ENST00000546588 PRDM5Q9NQX1 630 aaPredicted RBP8.78□□□□□ -1
VPS29-203ENST00000546588 FRRS1LQ9P0K9 344 aa8.78□□□□□ -1
VPS29-203ENST00000546588 FNIP2Q9P278 1114 aa8.78□□□□□ -1
VPS29-203ENST00000546588 PACSIN2Q9UNF0 486 aaPredicted RBP8.78□□□□□ -1
VPS29-203ENST00000546588 LZTS1Q9Y250 596 aa8.78□□□□□ -1
VPS29-203ENST00000546588 PRG3Q9Y2Y8 225 aaPredicted RBP8.78□□□□□ -1
VPS29-203ENST00000546588 SBDSQ9Y3A5 250 aaKnown RBP eCLIP8.78□□□□□ -1
VPS29-203ENST00000546588 TIMM13Q9Y5L4 95 aaPredicted RBP8.78□□□□□ -1
VPS29-203ENST00000546588 IRAK3Q9Y616 596 aa8.78□□□□□ -1
VPS29-203ENST00000546588 TARSL2A2RTX5 802 aaKnown RBP8.77□□□□□ -1.01
VPS29-203ENST00000546588 CTAGE15A4D2H0 777 aa8.77□□□□□ -1.01
VPS29-203ENST00000546588 MTMR11A4FU01 709 aa8.77□□□□□ -1.01
VPS29-203ENST00000546588 C3orf70A6NLC5 250 aaPredicted RBP8.77□□□□□ -1.01
VPS29-203ENST00000546588 ZNF185O15231 689 aa8.77□□□□□ -1.01
VPS29-203ENST00000546588 SPOPO43791 374 aa8.77□□□□□ -1.01
VPS29-203ENST00000546588 ABLIM3O94929 683 aa8.77□□□□□ -1.01
VPS29-203ENST00000546588 FGBP02675 491 aa8.77□□□□□ -1.01
VPS29-203ENST00000546588 FYNP06241 537 aa8.77□□□□□ -1.01
VPS29-203ENST00000546588 CTAGE8P0CG41 777 aa8.77□□□□□ -1.01
VPS29-203ENST00000546588 GPD1P21695 349 aa8.77□□□□□ -1.01
VPS29-203ENST00000546588 ADORA2BP29275 332 aa8.77□□□□□ -1.01
VPS29-203ENST00000546588 FLT3P36888 993 aa8.77□□□□□ -1.01
VPS29-203ENST00000546588 MATKP42679 507 aa8.77□□□□□ -1.01
VPS29-203ENST00000546588 MARCKSL1P49006 195 aa8.77□□□□□ -1.01
VPS29-203ENST00000546588 ARL4DP49703 201 aa8.77□□□□□ -1.01
VPS29-203ENST00000546588 ARSEP51690 589 aa8.77□□□□□ -1.01
VPS29-203ENST00000546588 EPHB4P54760 987 aa8.77□□□□□ -1.01
VPS29-203ENST00000546588 TAS2R40P59535 323 aa8.77□□□□□ -1.01
VPS29-203ENST00000546588 CREMQ03060 361 aa8.77□□□□□ -1.01
VPS29-203ENST00000546588 ADIGQ0VDE8 80 aa8.77□□□□□ -1.01
VPS29-203ENST00000546588 SCAPQ12770 1279 aa8.77□□□□□ -1.01
VPS29-203ENST00000546588 SIX1Q15475 284 aaPredicted RBP8.77□□□□□ -1.01
VPS29-203ENST00000546588 CCDC14Q49A88 953 aa8.77□□□□□ -1.01
VPS29-203ENST00000546588 C4orf46Q504U0 113 aa8.77□□□□□ -1.01
VPS29-203ENST00000546588 GLE1Q53GS7 698 aaKnown RBP8.77□□□□□ -1.01
VPS29-203ENST00000546588 HSP90B2PQ58FF3 399 aa8.77□□□□□ -1.01
VPS29-203ENST00000546588 WIPI1Q5MNZ9 446 aaPredicted RBP8.77□□□□□ -1.01
VPS29-203ENST00000546588 FAM102AQ5T9C2 384 aaPredicted RBP8.77□□□□□ -1.01
VPS29-203ENST00000546588 FAM171A1Q5VUB5 890 aa8.77□□□□□ -1.01
VPS29-203ENST00000546588 TPGS2Q68CL5 300 aa8.77□□□□□ -1.01
VPS29-203ENST00000546588 FAM117BQ6P1L5 589 aa8.77□□□□□ -1.01
VPS29-203ENST00000546588 DCUN1D2Q6PH85 259 aa8.77□□□□□ -1.01
VPS29-203ENST00000546588 C11orf96Q7Z7L8 435 aa8.77□□□□□ -1.01
VPS29-203ENST00000546588 CTAGE6Q86UF2 777 aa8.77□□□□□ -1.01
VPS29-203ENST00000546588 CTAGE4Q8IX94 777 aa8.77□□□□□ -1.01
VPS29-203ENST00000546588 CMASQ8NFW8 434 aaPredicted RBP8.77□□□□□ -1.01
VPS29-203ENST00000546588 GPBAR1Q8TDU6 330 aa8.77□□□□□ -1.01
VPS29-203ENST00000546588 SEC14L1Q92503 715 aa8.77□□□□□ -1.01
VPS29-203ENST00000546588 BADQ92934 168 aa8.77□□□□□ -1.01
VPS29-203ENST00000546588 ZNF558Q96NG5 402 aa8.77□□□□□ -1.01
VPS29-203ENST00000546588 TMEM209Q96SK2 561 aa8.77□□□□□ -1.01
VPS29-203ENST00000546588 CORO1BQ9BR76 489 aa8.77□□□□□ -1.01
VPS29-203ENST00000546588 TTLL2Q9BWV7 592 aa8.77□□□□□ -1.01
VPS29-203ENST00000546588 CARD6Q9BX69 1037 aa8.77□□□□□ -1.01
VPS29-203ENST00000546588 RXFP1Q9HBX9 757 aa8.77□□□□□ -1.01
VPS29-203ENST00000546588 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP8.77□□□□□ -1.01
VPS29-203ENST00000546588 SLTMQ9NWH9 1034 aaKnown RBP eCLIP8.77□□□□□ -1.01
VPS29-203ENST00000546588 DDX56Q9NY93 547 aaKnown RBP8.77□□□□□ -1.01
VPS29-203ENST00000546588 CHORDC1Q9UHD1 332 aaPredicted RBP8.77□□□□□ -1.01
VPS29-203ENST00000546588 MSRB2Q9Y3D2 182 aa8.77□□□□□ -1.01
VPS29-203ENST00000546588 RWDD3Q9Y3V2 267 aa8.77□□□□□ -1.01
VPS29-203ENST00000546588 INSL6Q9Y581 213 aa8.77□□□□□ -1.01
VPS29-203ENST00000546588 ESYT3A0FGR9 886 aa8.76□□□□□ -1.01
VPS29-203ENST00000546588 F8VP50 259 aa8.76□□□□□ -1.01
VPS29-203ENST00000546588 LINC01387J3KSC0 135 aa8.76□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms