RNA–Protein interactions for RNA: ENST00000546534.1

SCAF11-208, Transcript of SR-related CTD associated factor 11, humanhuman

TSL 3

Gene SCAF11, Length 705 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF11-208ENST00000546534 WBP1Q96G27 269 aa13.27□□□□□ -0.29
SCAF11-208ENST00000546534 MYO19Q96H55 970 aa13.27□□□□□ -0.29
SCAF11-208ENST00000546534 HEXIM2Q96MH2 286 aaKnown RBP13.27□□□□□ -0.29
SCAF11-208ENST00000546534 LGMNQ99538 433 aa13.27□□□□□ -0.29
SCAF11-208ENST00000546534 SEMA4CQ9C0C4 833 aa13.27□□□□□ -0.29
SCAF11-208ENST00000546534 SCML1Q9UN30 329 aa13.27□□□□□ -0.29
SCAF11-208ENST00000546534 MYO18BQ8IUG5 2567 aa13.27□□□□□ -0.29
SCAF11-208ENST00000546534 PVALEFA0A1B0GWK0 134 aa13.26□□□□□ -0.29
SCAF11-208ENST00000546534 LRRC72A6NJI9 287 aa13.26□□□□□ -0.29
SCAF11-208ENST00000546534 PYCARD-AS1I3L0S3 204 aa13.26□□□□□ -0.29
SCAF11-208ENST00000546534 TLR4O00206 839 aa13.26□□□□□ -0.29
SCAF11-208ENST00000546534 IKBKBO14920 756 aa13.26□□□□□ -0.29
SCAF11-208ENST00000546534 SIN3BO75182 1162 aa13.26□□□□□ -0.29
SCAF11-208ENST00000546534 RNASEH2AO75792 299 aaKnown RBP13.26□□□□□ -0.29
SCAF11-208ENST00000546534 ZBED1O96006 694 aa13.26□□□□□ -0.29
SCAF11-208ENST00000546534 CCR5P51681 352 aa13.26□□□□□ -0.29
SCAF11-208ENST00000546534 ZNF445P59923 1031 aa13.26□□□□□ -0.29
SCAF11-208ENST00000546534 RHDQ02161 417 aa13.26□□□□□ -0.29
SCAF11-208ENST00000546534 STK38Q15208 465 aa13.26□□□□□ -0.29
SCAF11-208ENST00000546534 MYLKQ15746 1914 aa13.26□□□□□ -0.29
SCAF11-208ENST00000546534 CST6Q15828 149 aa13.26□□□□□ -0.29
SCAF11-208ENST00000546534 ADGRF1Q5T601 910 aa13.26□□□□□ -0.29
SCAF11-208ENST00000546534 PM20D1Q6GTS8 502 aa13.26□□□□□ -0.29
SCAF11-208ENST00000546534 SHC4Q6S5L8 630 aa13.26□□□□□ -0.29
SCAF11-208ENST00000546534 KDM7AQ6ZMT4 941 aa13.26□□□□□ -0.29
SCAF11-208ENST00000546534 BHLHA9Q7RTU4 235 aa13.26□□□□□ -0.29
SCAF11-208ENST00000546534 PACS2Q86VP3 889 aa13.26□□□□□ -0.29
SCAF11-208ENST00000546534 DHX40Q8IX18 779 aaKnown RBP13.26□□□□□ -0.29
SCAF11-208ENST00000546534 TAS1R2Q8TE23 839 aa13.26□□□□□ -0.29
SCAF11-208ENST00000546534 SERAC1Q96JX3 654 aa13.26□□□□□ -0.29
SCAF11-208ENST00000546534 ULBP1Q9BZM6 244 aa13.26□□□□□ -0.29
SCAF11-208ENST00000546534 UBXN6Q9BZV1 441 aa13.26□□□□□ -0.29
SCAF11-208ENST00000546534 IMPG2Q9BZV3 1241 aa13.26□□□□□ -0.29
SCAF11-208ENST00000546534 NIF3L1Q9GZT8 377 aa13.26□□□□□ -0.29
SCAF11-208ENST00000546534 CLMPQ9H6B4 373 aa13.26□□□□□ -0.29
SCAF11-208ENST00000546534 CPNE5Q9HCH3 593 aa13.26□□□□□ -0.29
SCAF11-208ENST00000546534 OLA1Q9NTK5 396 aaKnown RBP13.26□□□□□ -0.29
SCAF11-208ENST00000546534 ADAMTS1Q9UHI8 967 aa13.26□□□□□ -0.29
SCAF11-208ENST00000546534 SFMBT1Q9UHJ3 866 aa13.26□□□□□ -0.29
SCAF11-208ENST00000546534 HBS1LQ9Y450 684 aaKnown RBP13.26□□□□□ -0.29
SCAF11-208ENST00000546534 RNASEH1O60930 286 aaKnown RBP13.25□□□□□ -0.29
SCAF11-208ENST00000546534 MT-CO3P00414 261 aa13.25□□□□□ -0.29
SCAF11-208ENST00000546534 SLFN14P0C7P3 912 aa13.25□□□□□ -0.29
SCAF11-208ENST00000546534 SLC8A1P32418 973 aa13.25□□□□□ -0.29
SCAF11-208ENST00000546534 RXRGP48443 463 aa13.25□□□□□ -0.29
SCAF11-208ENST00000546534 TKTL1P51854 596 aa13.25□□□□□ -0.29
SCAF11-208ENST00000546534 ST8SIA6P61647 398 aa13.25□□□□□ -0.29
SCAF11-208ENST00000546534 LSM11P83369 360 aaKnown RBP eCLIP13.25□□□□□ -0.29
SCAF11-208ENST00000546534 SFSWAPQ12872 951 aaKnown RBP13.25□□□□□ -0.29
SCAF11-208ENST00000546534 CUL4AQ13619 759 aa13.25□□□□□ -0.29
SCAF11-208ENST00000546534 CUL4BQ13620 913 aa13.25□□□□□ -0.29
SCAF11-208ENST00000546534 LY6DQ14210 128 aa13.25□□□□□ -0.29
SCAF11-208ENST00000546534 HNRNPA1L2Q32P51 320 aaKnown RBP13.25□□□□□ -0.29
SCAF11-208ENST00000546534 PKDCCQ504Y2 493 aa13.25□□□□□ -0.29
SCAF11-208ENST00000546534 ARHGAP40Q5TG30 622 aa13.25□□□□□ -0.29
SCAF11-208ENST00000546534 RFWD3Q6PCD5 774 aa13.25□□□□□ -0.29
SCAF11-208ENST00000546534 SPATS2Q86XZ4 545 aaKnown RBP13.25□□□□□ -0.29
SCAF11-208ENST00000546534 MMAAQ8IVH4 418 aaKnown RBP13.25□□□□□ -0.29
SCAF11-208ENST00000546534 ZNF248Q8NDW4 579 aa13.25□□□□□ -0.29
SCAF11-208ENST00000546534 TMEM174Q8WUU8 243 aa13.25□□□□□ -0.29
SCAF11-208ENST00000546534 EDEM1Q92611 657 aa13.25□□□□□ -0.29
SCAF11-208ENST00000546534 HIC2Q96JB3 615 aa13.25□□□□□ -0.29
SCAF11-208ENST00000546534 MRGPRX3Q96LB0 322 aa13.25□□□□□ -0.29
SCAF11-208ENST00000546534 OMDQ99983 421 aa13.25□□□□□ -0.29
SCAF11-208ENST00000546534 ERVMER34-1Q9H9K5 563 aa13.25□□□□□ -0.29
SCAF11-208ENST00000546534 FZD4Q9ULV1 537 aa13.25□□□□□ -0.29
SCAF11-208ENST00000546534 PCDHB1Q9Y5F3 818 aa13.25□□□□□ -0.29
SCAF11-208ENST00000546534 TP53BP1Q12888 1972 aaPredicted RBP13.25□□□□□ -0.29
SCAF11-208ENST00000546534 HECTD1Q9ULT8 2610 aa13.25□□□□□ -0.29
SCAF11-208ENST00000546534 GOLGA6L7A0A1B0GV03 622 aa13.24□□□□□ -0.29
SCAF11-208ENST00000546534 B8ZZF3 427 aa13.24□□□□□ -0.29
SCAF11-208ENST00000546534 TULP2O00295 520 aa13.24□□□□□ -0.29
SCAF11-208ENST00000546534 SPTLC2O15270 562 aa13.24□□□□□ -0.29
SCAF11-208ENST00000546534 ARHGAP6O43182 974 aa13.24□□□□□ -0.29
SCAF11-208ENST00000546534 MSI1O43347 362 aaKnown RBP13.24□□□□□ -0.29
SCAF11-208ENST00000546534 TBL1XO60907 577 aa13.24□□□□□ -0.29
SCAF11-208ENST00000546534 LATS1O95835 1130 aa13.24□□□□□ -0.29
SCAF11-208ENST00000546534 NR3C1P04150 777 aa13.24□□□□□ -0.29
SCAF11-208ENST00000546534 ACP1P24666 158 aa13.24□□□□□ -0.29
SCAF11-208ENST00000546534 AFMP43652 599 aa13.24□□□□□ -0.29
SCAF11-208ENST00000546534 GCLMP48507 274 aa13.24□□□□□ -0.29
SCAF11-208ENST00000546534 PCBP4P57723 403 aaKnown RBP13.24□□□□□ -0.29
SCAF11-208ENST00000546534 TMPRSS3P57727 454 aa13.24□□□□□ -0.29
SCAF11-208ENST00000546534 STK4Q13043 487 aa13.24□□□□□ -0.29
SCAF11-208ENST00000546534 SLC45A4Q5BKX6 768 aa13.24□□□□□ -0.29
SCAF11-208ENST00000546534 MPP7Q5T2T1 576 aa13.24□□□□□ -0.29
SCAF11-208ENST00000546534 C9orf64Q5T6V5 341 aa13.24□□□□□ -0.29
SCAF11-208ENST00000546534 PIK3R6Q5UE93 754 aa13.24□□□□□ -0.29
SCAF11-208ENST00000546534 BROXQ5VW32 411 aa13.24□□□□□ -0.29
SCAF11-208ENST00000546534 CEP135Q66GS9 1140 aa13.24□□□□□ -0.29
SCAF11-208ENST00000546534 OXR1Q8N573 874 aa13.24□□□□□ -0.29
SCAF11-208ENST00000546534 AADATQ8N5Z0 425 aa13.24□□□□□ -0.29
SCAF11-208ENST00000546534 FAM181AQ8N9Y4 354 aa13.24□□□□□ -0.29
SCAF11-208ENST00000546534 SLC4A11Q8NBS3 891 aa13.24□□□□□ -0.29
SCAF11-208ENST00000546534 RNF139Q8WU17 664 aa13.24□□□□□ -0.29
SCAF11-208ENST00000546534 TTC17Q96AE7 1141 aa13.24□□□□□ -0.29
SCAF11-208ENST00000546534 LMLNQ96KR4 655 aa13.24□□□□□ -0.29
SCAF11-208ENST00000546534 FAM129BQ96TA1 746 aa13.24□□□□□ -0.29
SCAF11-208ENST00000546534 DNAI2Q9GZS0 605 aa13.24□□□□□ -0.29
SCAF11-208ENST00000546534 KCTD10Q9H3F6 313 aa13.24□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms