RNA–Protein interactions for RNA: ENST00000544750.1

USP28-212, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 542 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-212ENST00000544750 SFMBT1Q9UHJ3 866 aa13.35□□□□□ -0.27
USP28-212ENST00000544750 INTS6Q9UL03 887 aaKnown RBP13.35□□□□□ -0.27
USP28-212ENST00000544750 TRAF3IP3Q9Y228 551 aa13.35□□□□□ -0.27
USP28-212ENST00000544750 NCKAP1Q9Y2A7 1128 aa13.35□□□□□ -0.27
USP28-212ENST00000544750 A0A1W2PP55 124 aa13.34□□□□□ -0.27
USP28-212ENST00000544750 MID1O15344 667 aa13.34□□□□□ -0.27
USP28-212ENST00000544750 IGLV3-27P01718 113 aa13.34□□□□□ -0.27
USP28-212ENST00000544750 POLR2EP19388 210 aaKnown RBP13.34□□□□□ -0.27
USP28-212ENST00000544750 SLC6A4P31645 630 aa13.34□□□□□ -0.27
USP28-212ENST00000544750 CCR5P51681 352 aa13.34□□□□□ -0.27
USP28-212ENST00000544750 NXPH1P58417 271 aa13.34□□□□□ -0.27
USP28-212ENST00000544750 CFHR1Q03591 330 aa13.34□□□□□ -0.27
USP28-212ENST00000544750 CST6Q15828 149 aa13.34□□□□□ -0.27
USP28-212ENST00000544750 NFIL3Q16649 462 aa13.34□□□□□ -0.27
USP28-212ENST00000544750 KMT5BQ4FZB7 885 aa13.34□□□□□ -0.27
USP28-212ENST00000544750 FAM133BQ5BKY9 247 aaKnown RBP13.34□□□□□ -0.27
USP28-212ENST00000544750 CEP135Q66GS9 1140 aa13.34□□□□□ -0.27
USP28-212ENST00000544750 SPACA3Q8IXA5 215 aa13.34□□□□□ -0.27
USP28-212ENST00000544750 DCBLD1Q8N8Z6 715 aa13.34□□□□□ -0.27
USP28-212ENST00000544750 OR2T34Q8NGX1 318 aa13.34□□□□□ -0.27
USP28-212ENST00000544750 SKA1Q96BD8 255 aa13.34□□□□□ -0.27
USP28-212ENST00000544750 TMEM176AQ96HP8 235 aa13.34□□□□□ -0.27
USP28-212ENST00000544750 SPATA32Q96LK8 384 aa13.34□□□□□ -0.27
USP28-212ENST00000544750 ERVMER34-1Q9H9K5 563 aa13.34□□□□□ -0.27
USP28-212ENST00000544750 GDF3Q9NR23 364 aa13.34□□□□□ -0.27
USP28-212ENST00000544750 FZD4Q9ULV1 537 aa13.34□□□□□ -0.27
USP28-212ENST00000544750 FRMD4BQ9Y2L6 1034 aa13.34□□□□□ -0.27
USP28-212ENST00000544750 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP13.33□□□□□ -0.28
USP28-212ENST00000544750 FAM47DPA6NHR8 397 aa13.33□□□□□ -0.28
USP28-212ENST00000544750 LRRC72A6NJI9 287 aa13.33□□□□□ -0.28
USP28-212ENST00000544750 YJEFN3A6XGL0 299 aa13.33□□□□□ -0.28
USP28-212ENST00000544750 E7ENQ6 273 aa13.33□□□□□ -0.28
USP28-212ENST00000544750 CAPN9O14815 690 aa13.33□□□□□ -0.28
USP28-212ENST00000544750 XPO1O14980 1071 aaKnown RBP13.33□□□□□ -0.28
USP28-212ENST00000544750 MSI1O43347 362 aaKnown RBP13.33□□□□□ -0.28
USP28-212ENST00000544750 ACTN4O43707 911 aaKnown RBP13.33□□□□□ -0.28
USP28-212ENST00000544750 CKMT2P17540 419 aa13.33□□□□□ -0.28
USP28-212ENST00000544750 INSM1Q01101 510 aaPredicted RBP13.33□□□□□ -0.28
USP28-212ENST00000544750 TBC1D25Q3MII6 688 aa13.33□□□□□ -0.28
USP28-212ENST00000544750 C9orf64Q5T6V5 341 aa13.33□□□□□ -0.28
USP28-212ENST00000544750 BSPRYQ5W0U4 402 aa13.33□□□□□ -0.28
USP28-212ENST00000544750 MSANTD2Q6P1R3 559 aa13.33□□□□□ -0.28
USP28-212ENST00000544750 RFWD3Q6PCD5 774 aa13.33□□□□□ -0.28
USP28-212ENST00000544750 INTS8Q75QN2 995 aaKnown RBP13.33□□□□□ -0.28
USP28-212ENST00000544750 SPATS2Q86XZ4 545 aaKnown RBP13.33□□□□□ -0.28
USP28-212ENST00000544750 SCML4Q8N228 414 aa13.33□□□□□ -0.28
USP28-212ENST00000544750 KDM1BQ8NB78 822 aa13.33□□□□□ -0.28
USP28-212ENST00000544750 FIBINQ8TAL6 211 aa13.33□□□□□ -0.28
USP28-212ENST00000544750 SEMA4DQ92854 862 aa13.33□□□□□ -0.28
USP28-212ENST00000544750 FAM131CQ96AQ9 280 aa13.33□□□□□ -0.28
USP28-212ENST00000544750 FAM129BQ96TA1 746 aa13.33□□□□□ -0.28
USP28-212ENST00000544750 TMEM8AQ9HCN3 771 aa13.33□□□□□ -0.28
USP28-212ENST00000544750 CISHQ9NSE2 258 aa13.33□□□□□ -0.28
USP28-212ENST00000544750 SERTAD1Q9UHV2 236 aa13.33□□□□□ -0.28
USP28-212ENST00000544750 HPSEQ9Y251 543 aa13.33□□□□□ -0.28
USP28-212ENST00000544750 ITIH6Q6UXX5 1313 aa13.33□□□□□ -0.28
USP28-212ENST00000544750 FAM237AA0A1B0GTK4 181 aa13.32□□□□□ -0.28
USP28-212ENST00000544750 GOLGA6L7A0A1B0GV03 622 aa13.32□□□□□ -0.28
USP28-212ENST00000544750 J3QKU1 62 aa13.32□□□□□ -0.28
USP28-212ENST00000544750 ERVH48-1M5A8F1 160 aa13.32□□□□□ -0.28
USP28-212ENST00000544750 TLR4O00206 839 aa13.32□□□□□ -0.28
USP28-212ENST00000544750 LATO43561 262 aa13.32□□□□□ -0.28
USP28-212ENST00000544750 TBL1XO60907 577 aa13.32□□□□□ -0.28
USP28-212ENST00000544750 ASLP04424 464 aa13.32□□□□□ -0.28
USP28-212ENST00000544750 PFKFB1P16118 471 aa13.32□□□□□ -0.28
USP28-212ENST00000544750 CMA1P23946 247 aa13.32□□□□□ -0.28
USP28-212ENST00000544750 ACP1P24666 158 aa13.32□□□□□ -0.28
USP28-212ENST00000544750 ACTN2P35609 894 aa13.32□□□□□ -0.28
USP28-212ENST00000544750 CSKP41240 450 aa13.32□□□□□ -0.28
USP28-212ENST00000544750 ARRB1P49407 418 aaPredicted RBP13.32□□□□□ -0.28
USP28-212ENST00000544750 PROX2Q3B8N5 592 aa13.32□□□□□ -0.28
USP28-212ENST00000544750 DHX40Q8IX18 779 aaKnown RBP13.32□□□□□ -0.28
USP28-212ENST00000544750 TTC39CQ8N584 583 aa13.32□□□□□ -0.28
USP28-212ENST00000544750 AADATQ8N5Z0 425 aa13.32□□□□□ -0.28
USP28-212ENST00000544750 EDEM1Q92611 657 aa13.32□□□□□ -0.28
USP28-212ENST00000544750 AZIN2Q96A70 460 aa13.32□□□□□ -0.28
USP28-212ENST00000544750 WBP1Q96G27 269 aa13.32□□□□□ -0.28
USP28-212ENST00000544750 PAGE5Q96GU1 130 aa13.32□□□□□ -0.28
USP28-212ENST00000544750 DNAI2Q9GZS0 605 aa13.32□□□□□ -0.28
USP28-212ENST00000544750 GDPD2Q9HCC8 539 aa13.32□□□□□ -0.28
USP28-212ENST00000544750 AASDHPPTQ9NRN7 309 aa13.32□□□□□ -0.28
USP28-212ENST00000544750 ABCC13Q9NSE7 274 aa13.32□□□□□ -0.28
USP28-212ENST00000544750 EXOC1Q9NV70 894 aa13.32□□□□□ -0.28
USP28-212ENST00000544750 FAM13BQ9NYF5 915 aa13.32□□□□□ -0.28
USP28-212ENST00000544750 CLCA2Q9UQC9 943 aa13.32□□□□□ -0.28
USP28-212ENST00000544750 ATP6V1DQ9Y5K8 247 aa13.32□□□□□ -0.28
USP28-212ENST00000544750 KIF26BQ2KJY2 2108 aa13.31□□□□□ -0.28
USP28-212ENST00000544750 A0A1B0GVL5 298 aa13.31□□□□□ -0.28
USP28-212ENST00000544750 TARSL2A2RTX5 802 aaKnown RBP13.31□□□□□ -0.28
USP28-212ENST00000544750 CAPN8A6NHC0 703 aa13.31□□□□□ -0.28
USP28-212ENST00000544750 IRAK2O43187 625 aa13.31□□□□□ -0.28
USP28-212ENST00000544750 CALUO43852 315 aaPredicted RBP13.31□□□□□ -0.28
USP28-212ENST00000544750 RNASEH2AO75792 299 aaKnown RBP13.31□□□□□ -0.28
USP28-212ENST00000544750 GABBR2O75899 941 aa13.31□□□□□ -0.28
USP28-212ENST00000544750 GLDCP23378 1020 aa13.31□□□□□ -0.28
USP28-212ENST00000544750 SLC8A1P32418 973 aa13.31□□□□□ -0.28
USP28-212ENST00000544750 ADPRHP54922 357 aa13.31□□□□□ -0.28
USP28-212ENST00000544750 DAOAP59103 153 aa13.31□□□□□ -0.28
USP28-212ENST00000544750 PPP2CBP62714 309 aa13.31□□□□□ -0.28
USP28-212ENST00000544750 PPP2CAP67775 309 aa13.31□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms